Guide to the Human Genome
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Name: C1orf156 Sequence: fasta or formatted (372aa) NCBI GI: 15553097
Description:

hypothetical protein MGC9084

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         16           2
 C cysteine            1.6          6           1
 D aspartate           5.6         21           1
 E glutamate           8.6         32           2
 F phenylalanine       6.5         24           2
 G glycine             6.2         23           3
 H histidine           3.0         11           1
 I isoleucine          4.8         18           2
 K lysine              9.7         36           2
 L leucine            11.0         41           2
 M methionine          1.3          5           1
 N asparagine          4.0         15           1
 P proline             3.8         14           1
 Q glutamine           3.0         11           1
 R arginine            3.5         13           1
 S serine              8.6         32           3
 T threonine           5.1         19           1
 V valine              6.2         23           2
 W tryptophan          0.8          3           1
 Y tyrosine            2.4          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein MGC9084 
FAM119B               0.028   hypothetical protein LOC25895 isoform a 
FAM119B               0.026   hypothetical protein LOC25895 isoform b 
FAM119A               0.025   hypothetical protein LOC151194 
FAM119A               0.025   hypothetical protein LOC151194 
PRMT8                 0.019   HMT1 hnRNP methyltransferase-like 4 
CYLC1                 0.019   cylicin, basic protein of sperm head cytoskeleton 1...
C17orf95              0.015   hypothetical protein LOC124512 
PRMT3                 0.015   protein arginine methyltransferase 3 isoform 3 [Hom...
PRMT3                 0.015   protein arginine methyltransferase 3 isoform 2 [Hom...
PRMT3                 0.015   protein arginine methyltransferase 3 isoform 1 [Homo...
C13orf39              0.014   hypothetical protein LOC196541 
CARM1                 0.014   coactivator-associated arginine methyltransferase 1 ...
FAM86B1               0.014   hypothetical protein LOC85002 
PRMT1                 0.012   HMT1 hnRNP methyltransferase-like 2 isoform 1 [Homo...
PRMT1                 0.012   HMT1 hnRNP methyltransferase-like 2 isoform 3 [Homo...
PRMT1                 0.012   HMT1 hnRNP methyltransferase-like 2 isoform 2 [Homo...
FAM86A                0.012   hypothetical protein LOC196483 isoform 1 
FAM86B2               0.011   hypothetical protein LOC653333 
FAM86A                0.011   hypothetical protein LOC196483 isoform 2 
SFRS12                0.011   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.011   splicing factor, arginine/serine-rich 12 isoform b [...
PTPN13                0.010   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.010   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.010   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.010   protein tyrosine phosphatase, non-receptor type 13 is...
ZFP37                 0.010   zinc finger protein 37 homolog 
FAM86B2               0.008   PREDICTED: hypothetical protein LOC653333 
ZBTB43                0.008   zinc finger and BTB domain containing 43 
ZBTB43                0.008   zinc finger and BTB domain containing 43 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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