Guide to the Human Genome
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Name: FAM86A Sequence: fasta or formatted (330aa) NCBI GI: 42476337
Description:

hypothetical protein LOC196483 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {296aa} hypothetical protein LOC196483 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         33           2
 C cysteine            2.4          8           1
 D aspartate           3.6         12           1
 E glutamate           9.1         30           2
 F phenylalanine       3.0         10           1
 G glycine             4.5         15           2
 H histidine           3.3         11           1
 I isoleucine          3.3         11           2
 K lysine              3.3         11           2
 L leucine            13.9         46           3
 M methionine          1.8          6           1
 N asparagine          2.1          7           1
 P proline             4.8         16           2
 Q glutamine           3.0         10           1
 R arginine            6.7         22           2
 S serine              6.7         22           2
 T threonine           6.7         22           2
 V valine              7.3         24           2
 W tryptophan          1.5          5           1
 Y tyrosine            2.7          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC196483 isoform 1 
FAM86B2               0.918   hypothetical protein LOC653333 
FAM86B2               0.891   PREDICTED: hypothetical protein LOC653333 
FAM86A                0.868   hypothetical protein LOC196483 isoform 2 
FAM86B1               0.791   hypothetical protein LOC85002 
FAM86C                0.200   hypothetical protein LOC55199 isoform 3 
FAM86C                0.187   hypothetical protein LOC55199 isoform 1 
FAM86C                0.118   hypothetical protein LOC55199 isoform 2 
LOC100292173          0.063   PREDICTED: hypothetical protein 
LOC731551             0.058   PREDICTED: similar to ectonucleotide pyrophosphatas...
LOC650354             0.058   PREDICTED: similar to ectonucleotide pyrophosphatas...
FAM119B               0.043   hypothetical protein LOC25895 isoform a 
FAM119A               0.038   hypothetical protein LOC151194 
FAM119A               0.038   hypothetical protein LOC151194 
C14orf138             0.033   hypothetical protein LOC79609 isoform b 
C14orf138             0.031   hypothetical protein LOC79609 isoform a 
C2orf34               0.028   hypothetical protein LOC79823 
C16orf68              0.025   hypothetical protein LOC79091 
C13orf39              0.024   hypothetical protein LOC196541 
C17orf95              0.020   hypothetical protein LOC124512 
C12orf72              0.016   hypothetical protein LOC254013 
C12orf72              0.016   hypothetical protein LOC254013 
C12orf72              0.016   hypothetical protein LOC254013 
C1orf156              0.014   hypothetical protein MGC9084 
FAM119B               0.013   hypothetical protein LOC25895 isoform b 
LOC100132339          0.011   PREDICTED: hypothetical protein 
LOC100132339          0.011   PREDICTED: hypothetical protein 
LOC100132339          0.011   PREDICTED: hypothetical protein 
CDH10                 0.008   cadherin 10, type 2 preproprotein 
SCN8A                 0.008   sodium channel, voltage gated, type VIII, alpha [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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