Guide to the Human Genome
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Name: C14orf138 Sequence: fasta or formatted (194aa) NCBI GI: 98986333
Description:

hypothetical protein LOC79609 isoform b

Not currently referenced in the text

Other entries for this name:
alt prot {229aa} hypothetical protein LOC79609 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         11           2
 C cysteine            2.6          5           2
 D aspartate           5.7         11           1
 E glutamate           9.8         19           2
 F phenylalanine       3.6          7           1
 G glycine             8.2         16           2
 H histidine           1.0          2           1
 I isoleucine          4.6          9           2
 K lysine              6.2         12           2
 L leucine            12.4         24           2
 M methionine          3.1          6           1
 N asparagine          2.1          4           1
 P proline             4.1          8           2
 Q glutamine           2.6          5           2
 R arginine            3.6          7           2
 S serine              7.7         15           2
 T threonine           5.2         10           1
 V valine              7.7         15           3
 W tryptophan          1.0          2           1
 Y tyrosine            3.1          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC79609 isoform b 
C14orf138             0.978   hypothetical protein LOC79609 isoform a 
FAM119A               0.206   hypothetical protein LOC151194 
FAM119A               0.206   hypothetical protein LOC151194 
FAM119B               0.154   hypothetical protein LOC25895 isoform a 
C13orf39              0.121   hypothetical protein LOC196541 
C17orf95              0.080   hypothetical protein LOC124512 
C16orf68              0.069   hypothetical protein LOC79091 
FAM119B               0.060   hypothetical protein LOC25895 isoform b 
FAM86B2               0.058   hypothetical protein LOC653333 
FAM86A                0.058   hypothetical protein LOC196483 isoform 2 
FAM86A                0.058   hypothetical protein LOC196483 isoform 1 
FAM86B1               0.058   hypothetical protein LOC85002 
FAM86B2               0.055   PREDICTED: hypothetical protein LOC653333 
PRMT1                 0.038   HMT1 hnRNP methyltransferase-like 2 isoform 1 [Homo...
PRMT1                 0.038   HMT1 hnRNP methyltransferase-like 2 isoform 3 [Homo...
PRMT1                 0.038   HMT1 hnRNP methyltransferase-like 2 isoform 2 [Homo...
C12orf72              0.036   hypothetical protein LOC254013 
C12orf72              0.036   hypothetical protein LOC254013 
C12orf72              0.036   hypothetical protein LOC254013 
PRMT8                 0.025   HMT1 hnRNP methyltransferase-like 4 
ACACA                 0.016   acetyl-Coenzyme A carboxylase alpha isoform 2 
ACACA                 0.016   acetyl-Coenzyme A carboxylase alpha isoform 4 
ACACA                 0.016   acetyl-Coenzyme A carboxylase alpha isoform 3 
ACACA                 0.016   acetyl-Coenzyme A carboxylase alpha isoform 2 
ACACA                 0.016   acetyl-Coenzyme A carboxylase alpha isoform 1 
PRMT7                 0.014   protein arginine methyltransferase 7 
IL4R                  0.014   interleukin 4 receptor alpha chain isoform a precurso...
ZNF239                0.011   zinc finger protein 239 
ZNF239                0.011   zinc finger protein 239 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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