Guide to the Human Genome
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Name: CHN2 Sequence: fasta or formatted (468aa) NCBI GI: 4757980
Description:

beta chimerin isoform 2

Referenced in:

Rho and Rac
Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [332aa] beta chimerin isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         27           2
 C cysteine            2.4         11           2
 D aspartate           5.1         24           1
 E glutamate           7.9         37           2
 F phenylalanine       3.4         16           1
 G glycine             4.9         23           2
 H histidine           4.3         20           1
 I isoleucine          6.8         32           2
 K lysine              6.2         29           2
 L leucine             9.0         42           2
 M methionine          2.4         11           1
 N asparagine          4.9         23           1
 P proline             4.5         21           2
 Q glutamine           3.0         14           2
 R arginine            6.6         31           2
 S serine              5.8         27           2
 T threonine           5.8         27           2
 V valine              5.8         27           2
 W tryptophan          0.6          3           1
 Y tyrosine            4.9         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   beta chimerin isoform 2 
CHN1                  0.724   chimerin (chimaerin) 1 isoform a 
CHN1                  0.683   chimerin (chimaerin) 1 isoform b 
CHN2                  0.588   beta chimerin isoform 1 
ARHGAP21              0.114   Rho GTPase activating protein 21 
ARHGAP27              0.114   Rho GTPase activating protein 27 isoform b 
ARHGAP27              0.114   Rho GTPase activating protein 27 isoform a 
GMIP                  0.114   GEM interacting protein 
ARHGAP23              0.112   Rho GTPase activating protein 23 
ARHGAP15              0.112   ARHGAP15 
SNX26                 0.112   sorting nexin 26 
MYO9B                 0.112   myosin IXB isoform 2 
MYO9B                 0.112   myosin IXB isoform 1 
ARHGAP10              0.112   Rho GTPase activating protein 10 
ARHGAP12              0.110   Rho GTPase activating protein 12 
MYO9A                 0.110   myosin IXA 
ARHGAP26              0.110   GTPase regulator associated with the focal adhesion...
ARHGAP26              0.110   GTPase regulator associated with the focal adhesion k...
HMHA1                 0.109   minor histocompatibility antigen HA-1 
GRLF1                 0.108   glucocorticoid receptor DNA binding factor 1 
OPHN1                 0.105   oligophrenin 1 
ARHGAP5               0.104   Rho GTPase activating protein 5 isoform a 
ARHGAP5               0.104   Rho GTPase activating protein 5 isoform b 
ARHGAP29              0.102   PTPL1-associated RhoGAP 1 
RICS                  0.102   Rho GTPase-activating protein isoform 1 
RICS                  0.102   Rho GTPase-activating protein isoform 2 
ARHGAP9               0.101   Rho GTPase activating protein 9 isoform 1 
ARHGAP9               0.101   Rho GTPase activating protein 9 isoform 3 
CDGAP                 0.099   Cdc42 GTPase-activating protein 
BCR                   0.098   breakpoint cluster region isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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