Guide to the Human Genome
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Name: FAM86B1 Sequence: fasta or formatted (296aa) NCBI GI: 134133220
Description:

hypothetical protein LOC85002

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         29           2
 C cysteine            2.4          7           1
 D aspartate           4.4         13           1
 E glutamate           7.1         21           2
 F phenylalanine       3.4         10           1
 G glycine             5.7         17           2
 H histidine           3.0          9           2
 I isoleucine          4.1         12           2
 K lysine              3.4         10           2
 L leucine            13.5         40           3
 M methionine          1.7          5           1
 N asparagine          2.7          8           1
 P proline             4.7         14           2
 Q glutamine           3.4         10           1
 R arginine            6.4         19           2
 S serine              6.8         20           2
 T threonine           5.7         17           2
 V valine              7.8         23           2
 W tryptophan          2.0          6           1
 Y tyrosine            2.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC85002 
FAM86B2               0.970   hypothetical protein LOC653333 
FAM86A                0.912   hypothetical protein LOC196483 isoform 2 
FAM86A                0.881   hypothetical protein LOC196483 isoform 1 
FAM86B2               0.879   PREDICTED: hypothetical protein LOC653333 
FAM86C                0.212   hypothetical protein LOC55199 isoform 3 
FAM86C                0.130   hypothetical protein LOC55199 isoform 2 
FAM86C                0.121   hypothetical protein LOC55199 isoform 1 
LOC100292173          0.077   PREDICTED: hypothetical protein 
LOC731551             0.067   PREDICTED: similar to ectonucleotide pyrophosphatas...
LOC650354             0.067   PREDICTED: similar to ectonucleotide pyrophosphatas...
FAM119A               0.046   hypothetical protein LOC151194 
FAM119A               0.046   hypothetical protein LOC151194 
FAM119B               0.044   hypothetical protein LOC25895 isoform a 
C14orf138             0.037   hypothetical protein LOC79609 isoform b 
C14orf138             0.037   hypothetical protein LOC79609 isoform a 
C2orf34               0.025   hypothetical protein LOC79823 
C17orf95              0.023   hypothetical protein LOC124512 
C13orf39              0.023   hypothetical protein LOC196541 
C16orf68              0.023   hypothetical protein LOC79091 
C1orf156              0.018   hypothetical protein MGC9084 
C12orf72              0.014   hypothetical protein LOC254013 
C12orf72              0.014   hypothetical protein LOC254013 
C12orf72              0.014   hypothetical protein LOC254013 
FAM119B               0.012   hypothetical protein LOC25895 isoform b 
GREB1                 0.009   GREB1 protein isoform a 
SMYD2                 0.009   SET and MYND domain containing 2 
PRMT2                 0.009   HMT1 hnRNP methyltransferase-like 1 
PRMT2                 0.009   HMT1 hnRNP methyltransferase-like 1 
PRMT6                 0.007   protein arginine methyltransferase 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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