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Search of human proteins with 5803191
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5803191 transcription elongation factor A 1 isoform 1 [Homo
sapiens]
(301 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5803191 transcription elongation factor A 1 isoform 1 [Homo s... 598 e-171
gi|239749424 PREDICTED: hypothetical protein XP_002347041 [Homo ... 571 e-163
gi|45439355 transcription elongation factor A 1 isoform 2 [Homo ... 547 e-156
gi|4507385 transcription elongation factor A protein 2 isoform a... 392 e-109
gi|38505156 transcription elongation factor A protein 2 isoform ... 363 e-101
gi|41350335 transcription elongation factor A (SII), 3 [Homo sap... 339 2e-93
gi|154146187 TFIIS central domain-containing protein 1 [Homo sap... 128 5e-30
gi|7662018 PHD finger protein 3 [Homo sapiens] 74 2e-13
gi|28558977 mediator complex subunit 26 [Homo sapiens] 58 1e-08
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 52 6e-07
gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens] 52 6e-07
gi|208022641 elongin A [Homo sapiens] 51 1e-06
gi|47271475 SPOC domain containing 1 [Homo sapiens] 51 1e-06
gi|7706499 DNA directed RNA polymerase III polypeptide K [Homo s... 49 4e-06
gi|23308505 hypothetical protein LOC127428 [Homo sapiens] 46 5e-05
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 41 0.001
gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens] 38 0.013
gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens] 36 0.036
gi|154816198 transcription elongation factor B polypeptide 3C-li... 36 0.048
gi|156938279 transcription elongation factor B polypeptide 3C [H... 36 0.048
gi|110349775 zinc finger protein 12 isoform b [Homo sapiens] 35 0.062
gi|66348108 zinc finger protein 12 isoform a [Homo sapiens] 35 0.062
gi|50658069 phosphodiesterase 4D interacting protein isoform 2 [... 35 0.081
gi|157311604 phosphodiesterase 4D interacting protein isoform 1 ... 35 0.081
gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens] 35 0.081
gi|45439357 elongin A2 [Homo sapiens] 35 0.081
gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens] 35 0.081
gi|50658071 phosphodiesterase 4D interacting protein isoform 5 [... 35 0.11
gi|221136803 zinc finger protein 776 [Homo sapiens] 34 0.14
gi|23097321 zinc finger protein 383 [Homo sapiens] 34 0.14
>gi|5803191 transcription elongation factor A 1 isoform 1 [Homo
sapiens]
Length = 301
Score = 598 bits (1542), Expect = e-171
Identities = 301/301 (100%), Positives = 301/301 (100%)
Query: 1 MEDEVVRFAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDE 60
MEDEVVRFAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDE
Sbjct: 1 MEDEVVRFAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDE 60
Query: 61 EVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDET 120
EVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDET
Sbjct: 61 EVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDET 120
Query: 121 NARDTYVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEI 180
NARDTYVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEI
Sbjct: 121 NARDTYVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEI 180
Query: 181 RNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNL 240
RNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNL
Sbjct: 181 RNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNL 240
Query: 241 TKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF 300
TKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF
Sbjct: 241 TKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF 300
Query: 301 C 301
C
Sbjct: 301 C 301
>gi|239749424 PREDICTED: hypothetical protein XP_002347041 [Homo
sapiens]
Length = 287
Score = 571 bits (1472), Expect = e-163
Identities = 287/287 (100%), Positives = 287/287 (100%)
Query: 15 MVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK 74
MVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK
Sbjct: 1 MVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK 60
Query: 75 KLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAP 134
KLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAP
Sbjct: 61 KLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAP 120
Query: 135 STSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSR 194
STSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSR
Sbjct: 121 STSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSR 180
Query: 195 ISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTG 254
ISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTG
Sbjct: 181 ISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTG 240
Query: 255 GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC
Sbjct: 241 GTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 287
>gi|45439355 transcription elongation factor A 1 isoform 2 [Homo
sapiens]
Length = 280
Score = 547 bits (1410), Expect = e-156
Identities = 280/301 (93%), Positives = 280/301 (93%), Gaps = 21/301 (6%)
Query: 1 MEDEVVRFAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDE 60
MEDEVVRFAKKMDKMVQKKNA STRIGMSVNAIRKQSTDE
Sbjct: 1 MEDEVVRFAKKMDKMVQKKNA---------------------STRIGMSVNAIRKQSTDE 39
Query: 61 EVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDET 120
EVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDET
Sbjct: 40 EVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDET 99
Query: 121 NARDTYVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEI 180
NARDTYVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEI
Sbjct: 100 NARDTYVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEI 159
Query: 181 RNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNL 240
RNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNL
Sbjct: 160 RNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNL 219
Query: 241 TKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF 300
TKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF
Sbjct: 220 TKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF 279
Query: 301 C 301
C
Sbjct: 280 C 280
>gi|4507385 transcription elongation factor A protein 2 isoform a
[Homo sapiens]
Length = 299
Score = 392 bits (1006), Expect = e-109
Identities = 201/301 (66%), Positives = 241/301 (80%), Gaps = 7/301 (2%)
Query: 2 EDEVVRFAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEE 61
E+E+ R A+++DKMV KK+A GA+DLL+ELK +P+TL LLQSTR+GMSVNA+RKQS+DEE
Sbjct: 5 EEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEE 64
Query: 62 VTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETN 121
V +LAKSLIKSWKKLLD S K + + P TS +R+ S + R +
Sbjct: 65 VIALAKSLIKSWKKLLDA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRPELPR 118
Query: 122 ARDT-YVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEI 180
A T +++FP P T D+VR KCREML AAL+T D++AIGAD E L +QIEE I++++
Sbjct: 119 APSTPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDV 178
Query: 181 RNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNL 240
NTDMKYKNRVRSRISNLKDAKNP+LR+NVLCG I P A MT+EEMASDELKE+RK +
Sbjct: 179 GNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAM 238
Query: 241 TKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF 300
TKEAIREHQMA+TGGTQTDLFTCGKC+KKNCTYTQVQTRS+DEPMTTFVVCNECGNRWKF
Sbjct: 239 TKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKF 298
Query: 301 C 301
C
Sbjct: 299 C 299
>gi|38505156 transcription elongation factor A protein 2 isoform b
[Homo sapiens]
Length = 272
Score = 363 bits (933), Expect = e-101
Identities = 188/278 (67%), Positives = 222/278 (79%), Gaps = 7/278 (2%)
Query: 25 LDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTEK 84
+DLL+ELK +P+TL LLQSTR+GMSVNA+RKQS+DEEV +LAKSLIKSWKKLLD S K
Sbjct: 1 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDA-SDAK 59
Query: 85 DLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDT-YVSSFPRAPSTSDSVRLK 143
+ + P TS +R+ S + R + A T +++FP P T D+VR K
Sbjct: 60 ARERGRGMPLPTS-----SRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVTCDAVRNK 114
Query: 144 CREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKN 203
CREML AAL+T D++AIGAD E L +QIEE I++++ NTDMKYKNRVRSRISNLKDAKN
Sbjct: 115 CREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKN 174
Query: 204 PNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTC 263
P+LR+NVLCG I P A MT+EEMASDELKE+RK +TKEAIREHQMA+TGGTQTDLFTC
Sbjct: 175 PDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTC 234
Query: 264 GKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
GKC+KKNCTYTQVQTRS+DEPMTTFVVCNECGNRWKFC
Sbjct: 235 GKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 272
>gi|41350335 transcription elongation factor A (SII), 3 [Homo
sapiens]
Length = 348
Score = 339 bits (869), Expect = 2e-93
Identities = 182/345 (52%), Positives = 229/345 (66%), Gaps = 45/345 (13%)
Query: 2 EDEVVRFAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEE 61
E+E++R AKK++KMV +KN GALDLLK+L + M+++LLQ+TRIG++VN +RK +D+E
Sbjct: 4 EEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKE 63
Query: 62 VTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRK---D 118
V SLAK LIK+WK+LLD P K +++E A + E + +G RK D
Sbjct: 64 VVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKRED 123
Query: 119 ETNARDTY-----VSSFPRAPS-------------------------------------T 136
RD+ SS P+ PS T
Sbjct: 124 PKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPCYLT 183
Query: 137 SDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRIS 196
DSVR KC EML+AAL+ DDY G + +++ S+IE+ IYQE+++TDMKY+NRVRSRIS
Sbjct: 184 GDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRSRIS 243
Query: 197 NLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGT 256
NLKD +NP LR+NVL G I L A+MTAEEMASDEL+E+R +T+EAIREHQMAKTGGT
Sbjct: 244 NLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGT 303
Query: 257 QTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
TDLF C KCKKKNCTY QVQTRSADEPMTTFV+CNECGNRWKFC
Sbjct: 304 TTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 348
>gi|154146187 TFIIS central domain-containing protein 1 [Homo
sapiens]
Length = 381
Score = 128 bits (322), Expect = 5e-30
Identities = 95/343 (27%), Positives = 160/343 (46%), Gaps = 49/343 (14%)
Query: 2 EDEVVRFAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEE 61
++++ A +++++ K+N + L EL+ I +T E LQ T + +V + K
Sbjct: 34 KNQIAARASLIEQLMSKRNFEDLGNHLTELETIYVTKEHLQETDVVRAVYRVLKNCPSVA 93
Query: 62 VTSLAKSLIKSWKKLL-----------------------DGPSTEKDLDEKKKEPAITSQ 98
+ AK L+ WK + GPS + +E I S
Sbjct: 94 LKKKAKCLLSKWKAVYKQTHSKARNSPKLFPVRGNKEENSGPSHDPSQNETL---GICSS 150
Query: 99 NSPEAREESTSSGNV--SNRKDETNARDTYV------SSFPRAPSTSDS---VRLKCREM 147
NS +++ + S + NR + ++ + S+ R+ D +R KC E+
Sbjct: 151 NSLSSQDVAKLSEMIVPENRAIQLKPKEEHFGDGDPESTGKRSSELLDPTTPMRTKCIEL 210
Query: 148 LAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLR 207
L AAL + + +IEE ++ KYK +RS+++NLK+ +N +L+
Sbjct: 211 LYAALTSSSTDQPKADLWQNFAREIEEHVFTLYSKNIKKYKTCIRSKVANLKNPRNSHLQ 270
Query: 208 KNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKT-GGTQTDLFTCGKC 266
+N+L G P FA MT EMA+ ELK++R + T+ I+EH + + GTQT+ C +C
Sbjct: 271 QNLLSGTTSPREFAEMTVMEMANKELKQLRASYTESCIQEHYLPQVIDGTQTNKIKCRRC 330
Query: 267 KKKNCTYT-----------QVQTRSADEPMTTFVVCNECGNRW 298
+K NC T V+ + DE M T+V+CNECG +W
Sbjct: 331 EKYNCKVTVIDRGTLFLPSWVRNSNPDEQMMTYVICNECGEQW 373
>gi|7662018 PHD finger protein 3 [Homo sapiens]
Length = 2039
Score = 73.6 bits (179), Expect = 2e-13
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 4/168 (2%)
Query: 81 STEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSV 140
S EK K+ +T ++ + + +K E + + ++ PS +D +
Sbjct: 869 SEEKSEKIPKESTTVTCTGEKASKPGTHEKQEMKKKKVEKGVLNVHPAASASKPS-ADQI 927
Query: 141 RLKCREMLAAAL--RTGDDYIAIGADEE-ELGSQIEEAIYQEIRNTDMKYKNRVRSRISN 197
R R L L R D + + ++ ++ ++IE+ ++ R+TD KYKN+ RS + N
Sbjct: 928 RQSVRHSLKDILMKRLTDSNLKVPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFN 987
Query: 198 LKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAI 245
LKD KN L K VL G + PD RM+ EE+AS EL R+ + I
Sbjct: 988 LKDPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTI 1035
>gi|28558977 mediator complex subunit 26 [Homo sapiens]
Length = 600
Score = 57.8 bits (138), Expect = 1e-08
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 7 RFAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLA 66
R + +D +N L+++ L+ P+T E L+ TR+G +N +RK++ +EE+ A
Sbjct: 14 RLLQAIDPQSNIRNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRA 73
Query: 67 KSLIKSWKKLLD 78
K L++SW+KL++
Sbjct: 74 KKLLRSWQKLIE 85
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 52.0 bits (123), Expect = 6e-07
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 127 VSSFPRAPSTS--DSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTD 184
+S+ P P++ ++R +E+L + DD I + ++ IE+ ++ + TD
Sbjct: 659 MSAAPSQPNSQIRQNIRRSLKEILWKRVNDSDDLIMTENEVGKIALHIEKEMFNLFQVTD 718
Query: 185 MKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRK 238
+YK++ RS + NLKD KN L VL I R+ EE+ S EL ++
Sbjct: 719 NRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPEELVSKELSTWKE 772
>gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens]
Length = 1189
Score = 52.0 bits (123), Expect = 6e-07
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 127 VSSFPRAPSTS--DSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTD 184
+S+ P P++ ++R +E+L + DD I + ++ IE+ ++ + TD
Sbjct: 659 MSAAPSQPNSQIRQNIRRSLKEILWKRVNDSDDLIMTENEVGKIALHIEKEMFNLFQVTD 718
Query: 185 MKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRK 238
+YK++ RS + NLKD KN L VL I R+ EE+ S EL ++
Sbjct: 719 NRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPEELVSKELSTWKE 772
>gi|208022641 elongin A [Homo sapiens]
Length = 798
Score = 51.2 bits (121), Expect = 1e-06
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 25 LDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL------- 77
L LK+L +P+T+++L T +G +VN++RK E V S A+ L+ WKKL+
Sbjct: 53 LKYLKKLSTLPITVDILAETGVGKTVNSLRKH---EHVGSFARDLVAQWKKLVPVERNAE 109
Query: 78 -DGPSTEKDLDEKKKEPAITSQNSPEAREEST--SSGNVSNRKDETNARDTYVSSFPRAP 134
D EK K+ A+ + E + T ++G+ S D + +S R
Sbjct: 110 PDEQDFEKSNSRKRPRDALQKEEEMEGDYQETWKATGSRSYSPDHRQKKHRKLSELERPH 169
Query: 135 STS 137
S
Sbjct: 170 KVS 172
>gi|47271475 SPOC domain containing 1 [Homo sapiens]
Length = 1216
Score = 50.8 bits (120), Expect = 1e-06
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Query: 86 LDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSVRLKCR 145
L + +PA + EA E+S + + + Y+ +V +
Sbjct: 565 LGDPSSDPACSQSGPMEAEEDSLPEQPEDSAQLQQEKPSLYIG-------VRGTVVRSMQ 617
Query: 146 EMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPN 205
E+L LR D + E + + IE A++ + T+ +YK + RS + NL+D +N +
Sbjct: 618 EVLWTRLRELPDPVLSEEVVEGIAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLD 677
Query: 206 LRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAI 245
L V+ G++ P RM++ ++A EL R K +
Sbjct: 678 LFLKVVHGDVTPYDLVRMSSMQLAPQELARWRDQEEKRGL 717
>gi|7706499 DNA directed RNA polymerase III polypeptide K [Homo
sapiens]
Length = 108
Score = 49.3 bits (116), Expect = 4e-06
Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 262 TCGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 299
+C KC+ + Q+QTRSADEPMTTF C +CG+RW+
Sbjct: 68 SCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
>gi|23308505 hypothetical protein LOC127428 [Homo sapiens]
Length = 208
Score = 45.8 bits (107), Expect = 5e-05
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 18 KKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL 77
K+N AL LK K IP + E+L+STRIG +VN +RK S D EV SLA+ + WK
Sbjct: 56 KENLVEALQELK--KKIP-SREVLKSTRIGHTVNKMRKHS-DSEVASLAREVYTEWKTFT 111
Query: 78 DGPSTEKDLDEKKKEPAITS 97
+ S + E + +P S
Sbjct: 112 EKHSNRPSI-EVRSDPKTES 130
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 41.2 bits (95), Expect = 0.001
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 27 LLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPST---- 82
+L L+++P+T++ L+ V + K S DEE+ LA L+ W ++ S+
Sbjct: 94 ILLTLQHLPLTVDHLKQNNTAKLVKQLSKSSEDEELRKLASVLVSDWMAVIRSQSSTQPA 153
Query: 83 EKD----LDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPST 136
EKD DE K + + E + E+ + ++++ + T S + ST
Sbjct: 154 EKDKKKRKDEGKSRTTLPERPLTEVKAETRAEEAPEKKREKPKSLRTTAPSHAKFRST 211
>gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]
Length = 1684
Score = 37.7 bits (86), Expect = 0.013
Identities = 46/255 (18%), Positives = 117/255 (45%), Gaps = 21/255 (8%)
Query: 2 EDEVVRFAKKMDKMVQK-KNAAGALDL-LKELKNIPMTL---ELLQSTRIGMSVNAIRKQ 56
++++++FAKK ++QK K+ L+ ++EL++ P+T +++++ + + K
Sbjct: 27 KEDLIKFAKKQMMLIQKAKSRCTELEKEIEELRSKPVTEGTGDIIKALTERLDALLLEKA 86
Query: 57 STDEEVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNR 116
T+++ SL K IK +++ D + D ++ ++ I E + +
Sbjct: 87 ETEQQCLSLKKENIKMKQEVEDSVTKMGDAHKELEQSHINYVKEIENLKNELMAVRSKYS 146
Query: 117 KDETNARDTYVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAI 176
+D+ N + + + +L+ E L + D+ + + E++ EE I
Sbjct: 147 EDKANLQKQLEEAM--------NTQLELSEQLKFQNNSEDNVKKLQEEIEKIRPGFEEQI 198
Query: 177 --YQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELK 234
Q+ + K +++ N+ +A + + +KN+ ++ +L + + + +E+K
Sbjct: 199 LYLQKQLDATTDEKKETVTQLQNIIEANSQHYQKNI--NSLQEEL---LQLKAIHQEEVK 253
Query: 235 EMRKNLTKEAIREHQ 249
E+ + A +EH+
Sbjct: 254 ELMCQIEASA-KEHE 267
>gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens]
Length = 1844
Score = 36.2 bits (82), Expect = 0.036
Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 8/139 (5%)
Query: 25 LDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL----DGP 80
+D + E KN + ++ S+N + ++ ++ E L KS K KK L D
Sbjct: 1519 VDTIPETKNFCGPSVTVDASAATKSMNCLARKHSERE-QPLKKSQKKKQKKTLVILDDSD 1577
Query: 81 STEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSV 140
+ DLD + +++S +S EES + S +D+ N +T S P P T +
Sbjct: 1578 LFDTDLDFPDQSISLSSVSSSSNAEESKTGDEESKARDKGNNPET-KKSIPCPPKT--TA 1634
Query: 141 RLKCREMLAAALRTGDDYI 159
KC +++ L + +++
Sbjct: 1635 GKKCSALVSHCLNSLSEFM 1653
>gi|154816198 transcription elongation factor B polypeptide 3C-like
[Homo sapiens]
Length = 546
Score = 35.8 bits (81), Expect = 0.048
Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 37/141 (26%)
Query: 10 KKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSL 69
KK++K +QK +A +PMT ++L T I +V +RK + V A+ L
Sbjct: 25 KKLEKYLQKLSA------------LPMTADILAETGIRKTVKRLRKH---QHVGDFARDL 69
Query: 70 IKSWKKLL-----DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARD 124
WKKL+ GP D + E + + Q EA +E +
Sbjct: 70 AARWKKLVLVDRNTGP------DPQDPEESASRQRFGEALQEREKAWGFPEN-------- 115
Query: 125 TYVSSFPRAPSTSDSVRLKCR 145
++ PR+PS S R R
Sbjct: 116 ---ATAPRSPSHSPEHRRTAR 133
>gi|156938279 transcription elongation factor B polypeptide 3C [Homo
sapiens]
Length = 546
Score = 35.8 bits (81), Expect = 0.048
Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 37/141 (26%)
Query: 10 KKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSL 69
KK++K +QK +A +PMT ++L T I +V +RK + V A+ L
Sbjct: 25 KKLEKYLQKLSA------------LPMTADILAETGIRKTVKRLRKH---QHVGDFARDL 69
Query: 70 IKSWKKLL-----DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARD 124
WKKL+ GP D + E + + Q EA +E +
Sbjct: 70 AARWKKLVLVDRNTGP------DPQDPEESASRQRFGEALQEREKAWGFPEN-------- 115
Query: 125 TYVSSFPRAPSTSDSVRLKCR 145
++ PR+PS S R R
Sbjct: 116 ---ATAPRSPSHSPEHRRTAR 133
>gi|110349775 zinc finger protein 12 isoform b [Homo sapiens]
Length = 659
Score = 35.4 bits (80), Expect = 0.062
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 242 KEAIREHQMAKTGGTQTDLFTCGKC-KKKNCTYTQVQTRSADEPMTTFVVCNECG 295
K A+ +HQ TG CGKC +K+ T ++T + ++P CNECG
Sbjct: 355 KSALNDHQKIHTGVKLYKCSECGKCFCRKSTLTTHLRTHTGEKPYE----CNECG 405
Score = 32.0 bits (71), Expect = 0.69
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 244 AIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTR--SADEPMTTFVVCNECG 295
A+ HQ TG + + CGKC + +Y + R S ++P CNECG
Sbjct: 553 ALNRHQRTHTGEKAYECYECGKCFSQ-MSYLTIHHRIHSGEKPFE----CNECG 601
>gi|66348108 zinc finger protein 12 isoform a [Homo sapiens]
Length = 697
Score = 35.4 bits (80), Expect = 0.062
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 242 KEAIREHQMAKTGGTQTDLFTCGKC-KKKNCTYTQVQTRSADEPMTTFVVCNECG 295
K A+ +HQ TG CGKC +K+ T ++T + ++P CNECG
Sbjct: 393 KSALNDHQKIHTGVKLYKCSECGKCFCRKSTLTTHLRTHTGEKPYE----CNECG 443
Score = 32.0 bits (71), Expect = 0.69
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 244 AIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTR--SADEPMTTFVVCNECG 295
A+ HQ TG + + CGKC + +Y + R S ++P CNECG
Sbjct: 591 ALNRHQRTHTGEKAYECYECGKCFSQ-MSYLTIHHRIHSGEKPFE----CNECG 639
>gi|50658069 phosphodiesterase 4D interacting protein isoform 2
[Homo sapiens]
Length = 969
Score = 35.0 bits (79), Expect = 0.081
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 11/127 (8%)
Query: 25 LDLLKELKNI---PMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPS 81
L LL+E ++ PMT ELL+ ++ I +QS + L + +K+ +
Sbjct: 200 LHLLEEPTSMEVQPMTEELLKQQKLNSHETTITQQSVSD------SHLAELQEKIQQTEA 253
Query: 82 TEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSVR 141
T K L EK E + + + E+ ++ G + N K+ +R+ + +
Sbjct: 254 TNKILQEKLNEMSYELKCAQESSQK--QDGTIQNLKETLKSRERETEELYQVIEGQNDTM 311
Query: 142 LKCREML 148
K REML
Sbjct: 312 AKLREML 318
>gi|157311604 phosphodiesterase 4D interacting protein isoform 1
[Homo sapiens]
Length = 2346
Score = 35.0 bits (79), Expect = 0.081
Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 11/127 (8%)
Query: 25 LDLLKELKNI---PMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPS 81
L LL+E ++ PMT ELL+ ++ I +QS + L + +K+ +
Sbjct: 200 LHLLEEPTSMEVQPMTEELLKQQKLNSHETTITQQSVSD------SHLAELQEKIQQTEA 253
Query: 82 TEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSVR 141
T K L EK E + + + E+ ++ G + N K+ +R+ + +
Sbjct: 254 TNKILQEKLNEMSYELKCAQESSQK--QDGTIQNLKETLKSRERETEELYQVIEGQNDTM 311
Query: 142 LKCREML 148
K REML
Sbjct: 312 AKLREML 318
>gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens]
Length = 888
Score = 35.0 bits (79), Expect = 0.081
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 55 KQSTDEEVTSLAKSLIKSWKKLL----DGPSTEKDLDEKKKEPAITSQNSPEAREESTSS 110
K S +EEV S K LIK KK + P +K+ +++K++ + + +E++T S
Sbjct: 82 KNSAEEEVLSSEKQLIKMEKKEEEENGERPRKKKEKEKEKEKEKEKEKEREKEKEKATVS 141
Query: 111 GNVSNRKDETNARDTYVSSFPRAPSTSDSV 140
NV+ +A T ++ P A +TS SV
Sbjct: 142 ENVA-----ASAAATTPATSPPAVNTSPSV 166
>gi|45439357 elongin A2 [Homo sapiens]
Length = 753
Score = 35.0 bits (79), Expect = 0.081
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 27/136 (19%)
Query: 10 KKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSL 69
KK++K +QK +A +PMT ++L T I +V +RK + V A+ L
Sbjct: 25 KKLEKYLQKLSA------------LPMTADILAETGIRKTVKRLRKH---QHVGDFARDL 69
Query: 70 IKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSS 129
WKKL+ + + +E A + +++ + G N ++
Sbjct: 70 AARWKKLVLVDRNTRPGPQDPEESASRQRFGEALQDQEKAWGFPEN------------AT 117
Query: 130 FPRAPSTSDSVRLKCR 145
PR+PS S R R
Sbjct: 118 APRSPSHSPEHRRTAR 133
>gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens]
Length = 948
Score = 35.0 bits (79), Expect = 0.081
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 55 KQSTDEEVTSLAKSLIKSWKKLL----DGPSTEKDLDEKKKEPAITSQNSPEAREESTSS 110
K S +EEV S K LIK KK + P +K+ +++K++ + + +E++T S
Sbjct: 82 KNSAEEEVLSSEKQLIKMEKKEEEENGERPRKKKEKEKEKEKEKEKEKEREKEKEKATVS 141
Query: 111 GNVSNRKDETNARDTYVSSFPRAPSTSDSV 140
NV+ +A T ++ P A +TS SV
Sbjct: 142 ENVA-----ASAAATTPATSPPAVNTSPSV 166
>gi|50658071 phosphodiesterase 4D interacting protein isoform 5
[Homo sapiens]
Length = 1132
Score = 34.7 bits (78), Expect = 0.11
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 35 PMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPA 94
PMT ELL+ ++ I +QS + L + +K+ +T K L EK E +
Sbjct: 376 PMTEELLKQQKLNSHETTITQQSVSD------SHLAELQEKIQQTEATNKILQEKLNEMS 429
Query: 95 ITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSVRLKCREML 148
+ + E+ ++ G + N K+ +R+ + + K REML
Sbjct: 430 YELKCAQESSQK--QDGTIQNLKETLKSRERETEELYQVIEGQNDTMAKLREML 481
>gi|221136803 zinc finger protein 776 [Homo sapiens]
Length = 518
Score = 34.3 bits (77), Expect = 0.14
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 232 ELKEMRKNLT-KEAIREHQMAKTGGTQTDLFTCGKC-KKKNCTYTQVQTRSADEPMTTFV 289
E KE RK+ K + EHQ TG + CGKC +K Q S + P
Sbjct: 405 ECKECRKSFRYKSHLTEHQRVHTGERPYECRECGKCFHQKGSLIQHQQIHSGERPHE--- 461
Query: 290 VCNECG 295
C ECG
Sbjct: 462 -CGECG 466
>gi|23097321 zinc finger protein 383 [Homo sapiens]
Length = 475
Score = 34.3 bits (77), Expect = 0.14
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
Query: 232 ELKEMRKNLTKEA-IREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVV 290
+ KE K T+ + +R+HQ G + CGK +N Q Q DE
Sbjct: 367 DCKECGKAFTQSSQLRQHQRIHAGEKPFECLECGKAFTQNSQLFQHQRIHTDEKP---YE 423
Query: 291 CNECGNRWKFC 301
CNECG + C
Sbjct: 424 CNECGKAFNKC 434
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.126 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,757,608
Number of Sequences: 37866
Number of extensions: 467701
Number of successful extensions: 2365
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 2218
Number of HSP's gapped (non-prelim): 305
length of query: 301
length of database: 18,247,518
effective HSP length: 102
effective length of query: 199
effective length of database: 14,385,186
effective search space: 2862652014
effective search space used: 2862652014
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.