Search of human proteins with 5803149

Search of human proteins with 5803149

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5803149 coated vesicle membrane protein [Homo sapiens]
         (201 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5803149 coated vesicle membrane protein [Homo sapiens]             399   e-111
gi|32996709 transmembrane emp24 protein transport domain contain...   123   9e-29
gi|6679189 transmembrane emp24 domain containing 3 [Homo sapiens]     101   4e-22
gi|19923442 transmembrane emp24 protein transport domain contain...    86   2e-17
gi|39725636 transmembrane emp24 protein transport domain contain...    84   1e-16
gi|33457308 transmembrane emp24 protein transport domain contain...    82   3e-16
gi|5803040 interleukin 1 receptor-like 1 ligand precursor [Homo ...    75   4e-14
gi|98986464 transmembrane emp24 domain-containing protein 10 pre...    66   2e-11
gi|21389573 transmembrane emp24 protein transport domain contain...    33   0.12 
gi|21729876 ATP-binding cassette, sub-family C, member 11 isofor...    33   0.16 
gi|21729873 ATP-binding cassette, sub-family C, member 11 isofor...    33   0.16 
gi|15149474 ATP-binding cassette, sub-family C, member 11 isofor...    33   0.16 
gi|68163411 activated leukocyte cell adhesion molecule [Homo sap...    32   0.36 
gi|40255109 GrpE-like 2, mitochondrial [Homo sapiens]                  31   0.81 
gi|149274621 centrosomal protein 78kDa isoform a [Homo sapiens]        30   1.1  
gi|149274651 centrosomal protein 78kDa isoform b [Homo sapiens]        30   1.1  
gi|110611218 ribosome binding protein 1 [Homo sapiens]                 29   3.1  
gi|110611220 ribosome binding protein 1 [Homo sapiens]                 29   3.1  
gi|7662280 histone deacetylase 9 isoform 3 [Homo sapiens]              29   3.1  
gi|17158041 histone deacetylase 9 isoform 2 [Homo sapiens]             29   3.1  
gi|17158039 histone deacetylase 9 isoform 1 [Homo sapiens]             29   3.1  
gi|30795202 histone deacetylase 9 isoform 4 [Homo sapiens]             29   3.1  
gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapi...    28   4.0  
gi|118918413 MICAL C-terminal like [Homo sapiens]                      28   6.9  
gi|239753316 PREDICTED: similar to Rho guanine nucleotide exchan...    27   9.0  
gi|109134330 PHD finger protein 20-like 1 isoform 2 [Homo sapiens]     27   9.0  
gi|111120331 PHD finger protein 20-like 1 isoform 1 [Homo sapiens]     27   9.0  
gi|15011979 Rho guanine nucleotide exchange factor 4 isoform a [...    27   9.0  
gi|15011981 Rho guanine nucleotide exchange factor 4 isoform b [...    27   9.0  

>gi|5803149 coated vesicle membrane protein [Homo sapiens]
          Length = 201

 Score =  399 bits (1024), Expect = e-111
 Identities = 201/201 (100%), Positives = 201/201 (100%)

Query: 1   MVTLAELLVLLAALLATVSGYFVSIDAHAEECFFERVTSGTKMGLIFEVAEGGFLDIDVE 60
           MVTLAELLVLLAALLATVSGYFVSIDAHAEECFFERVTSGTKMGLIFEVAEGGFLDIDVE
Sbjct: 1   MVTLAELLVLLAALLATVSGYFVSIDAHAEECFFERVTSGTKMGLIFEVAEGGFLDIDVE 60

Query: 61  ITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQD 120
           ITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQD
Sbjct: 61  ITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQD 120

Query: 121 METEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVL 180
           METEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVL
Sbjct: 121 METEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVL 180

Query: 181 VAMTLGQIYYLKRFFEVRRVV 201
           VAMTLGQIYYLKRFFEVRRVV
Sbjct: 181 VAMTLGQIYYLKRFFEVRRVV 201


>gi|32996709 transmembrane emp24 protein transport domain containing
           7 [Homo sapiens]
          Length = 224

 Score =  123 bits (309), Expect = 9e-29
 Identities = 64/173 (36%), Positives = 97/173 (56%), Gaps = 1/173 (0%)

Query: 28  HAEECFFERVTSGTKMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMD 87
           +A++CF+E +  GTK  L F+V  GG  D+D  +  PD K +YK  ++    +TF A  +
Sbjct: 44  NAKQCFYEDIAQGTKCTLEFQVITGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKN 103

Query: 88  GTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQ-NKLEEMINELAVAMTAVKH 146
           GTYKFCFSN  ST T K V F   +GE P     E       ++E     +  A+ +V  
Sbjct: 104 GTYKFCFSNEFSTFTHKTVYFDFQVGEDPPLFPSENRVSALTQMESACVSIHEALKSVID 163

Query: 147 EQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRR 199
            Q +  +RE   R+  ++ N+RV  WS  EAL+L+ +++GQ++ LK FF  +R
Sbjct: 164 YQTHFRLREAQGRSRAEDLNTRVAYWSVGEALILLVVSIGQVFLLKSFFSDKR 216


>gi|6679189 transmembrane emp24 domain containing 3 [Homo sapiens]
          Length = 217

 Score =  101 bits (252), Expect = 4e-22
 Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 2/176 (1%)

Query: 28  HAEECFFERVTSGTKMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMD 87
           +A++CF E V  G K  L ++V  GG  D+D  +  P    IY+  ++    +T+ A + 
Sbjct: 36  NAKQCFHEEVEQGVKFSLDYQVITGGHYDVDCYVEDPQGNTIYRETKKQYDSFTYRAEVK 95

Query: 88  GTYKFCFSNRMSTMTPKIVMFTIDIG-EAPKGQDMETEAHQ-NKLEEMINELAVAMTAVK 145
           G Y+FCFSN  ST + K V F   +G E P   DM        ++E     +  A+  V 
Sbjct: 96  GVYQFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGNRVTALTQMESACVTIHEALKTVI 155

Query: 146 HEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV 201
             Q +  +RE   RA  ++ NSRV  WS  E + L  ++  Q+  LK FF  +R +
Sbjct: 156 DSQTHYRLREAQDRARAEDLNSRVSYWSVGETIALFVVSFSQVLLLKSFFTEKRPI 211


>gi|19923442 transmembrane emp24 protein transport domain containing
           5 [Homo sapiens]
          Length = 229

 Score = 86.3 bits (212), Expect = 2e-17
 Identities = 63/216 (29%), Positives = 105/216 (48%), Gaps = 25/216 (11%)

Query: 8   LVLLAAL----LATVSGYFVSID--------AHAEECFFERVTSGTKMGLIFEVAEGGFL 55
           ++LLAAL    L   +G+  S+D        A  +ECF++ +     + + ++V +G  L
Sbjct: 11  VLLLAALPPVLLPGAAGFTPSLDSDFTFTLPAGQKECFYQPMPLKASLEIEYQVLDGAGL 70

Query: 56  DIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTI---DI 112
           DID  +  P+ K +    R+S G +T    + G Y FCF N  ST++ K++ F +   ++
Sbjct: 71  DIDFHLASPEGKTLVFEQRKSDGVHTVETEV-GDYMFCFDNTFSTISEKVIFFELILDNM 129

Query: 113 GEAPKGQD------METEAHQNKLE---EMINELAVAMTAVKHEQEYMEVRERIHRAIND 163
           GE  + Q+        T+    KLE   E IN +   ++   H Q  +   E   R I +
Sbjct: 130 GEQAQEQEDWKKYITGTDILDMKLEDILESINSIKSRLSKSGHIQILLRAFEARDRNIQE 189

Query: 164 NTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFEVRR 199
           +   RV  WS    +V+V ++  Q+Y LK  FE +R
Sbjct: 190 SNFDRVNFWSMVNLVVMVVVSAIQVYMLKSLFEDKR 225


>gi|39725636 transmembrane emp24 protein transport domain containing
           9 [Homo sapiens]
          Length = 235

 Score = 83.6 bits (205), Expect = 1e-16
 Identities = 58/212 (27%), Positives = 100/212 (47%), Gaps = 19/212 (8%)

Query: 8   LVLLAALLATVSGYFVSIDAHAEECFFERVTSGT------------KMGLIFEVAEGGFL 55
           L+L+  L    S  +  I    ++CF E +   T            K    ++ A  G L
Sbjct: 25  LLLVLWLATRGSALYFHIGETEKKCFIEEIPDETMVIGNYRTQLYDKQREEYQPATPG-L 83

Query: 56  DIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCF---SNRMSTMTPKIVMFTIDI 112
            + VE+  P++K I      S G++TF +H  G ++ C    S + S     ++   +DI
Sbjct: 84  GMFVEVKDPEDKVILARQYGSEGRFTFTSHTPGEHQICLHSNSTKFSLFAGGMLRVHLDI 143

Query: 113 GEAPKGQDMETEAHQNKLEEM---INELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRV 169
                  D    A ++KL E+   + +L   +  ++ EQ Y   RE   R  +++TN RV
Sbjct: 144 QVGEHANDYAEIAAKDKLSELQLRVRQLVEQVEQIQKEQNYQRWREERFRQTSESTNQRV 203

Query: 170 VLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV 201
           + WS  + L+LVA+ + Q+ +LK FFE +++V
Sbjct: 204 LWWSILQTLILVAIGVWQMRHLKSFFEAKKLV 235


>gi|33457308 transmembrane emp24 protein transport domain containing
           4 [Homo sapiens]
          Length = 227

 Score = 82.0 bits (201), Expect = 3e-16
 Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 19/214 (8%)

Query: 6   ELLVLLAALLATVSGYFVSIDAHAEECFFERVTSGT------------KMGLIFEVAEGG 53
           + L+LLA       G +  I    + CF E +   T            K   +F  +  G
Sbjct: 15  QALLLLALCATGAQGLYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPG 74

Query: 54  FLDIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCF---SNRMSTMTPKIVMFTI 110
            L + VE+  PD K +      S G++TF +H  G ++ C    S RM+      +   +
Sbjct: 75  -LGMHVEVKDPDGKVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMALFAGGKLRVHL 133

Query: 111 DIGEAPKGQDMETEAHQNKLEEM---INELAVAMTAVKHEQEYMEVRERIHRAINDNTNS 167
           DI       +    A ++KL E+     +L   +  ++ EQ+Y   RE   R  +++TN 
Sbjct: 134 DIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQ 193

Query: 168 RVVLWSFFEALVLVAMTLGQIYYLKRFFEVRRVV 201
           RV+ WS  + ++L+   + Q+ +LK FFE +++V
Sbjct: 194 RVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV 227


>gi|5803040 interleukin 1 receptor-like 1 ligand precursor [Homo
           sapiens]
          Length = 227

 Score = 75.1 bits (183), Expect = 4e-14
 Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 17/191 (8%)

Query: 25  IDAHAEECFFERVTSGTKMGLIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYTFAA 84
           + A  ++CF++   +   +   ++V  G  LD+D  +  P    +    R++ G +T   
Sbjct: 38  LPAGRKQCFYQSAPANASLETEYQVIGGAGLDVDFTLESPQGVLLVSESRKADGVHTVEP 97

Query: 85  HMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAV 144
              G YK CF N  ST++ K+V F +        +++E  A   + EEM++   V M  +
Sbjct: 98  TEAGDYKLCFDNSFSTISEKLVFFELIFDSLQDDEEVEGWAEAVEPEEMLD---VKMEDI 154

Query: 145 KHEQEYMEVR--------------ERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYY 190
           K   E M  R              E   R + +    RV  WS     VL+ + + Q+  
Sbjct: 155 KESIETMRTRLERSIQMLTLLRAFEARDRNLQEGNLERVNFWSAVNVAVLLLVAVLQVCT 214

Query: 191 LKRFFEVRRVV 201
           LKRFF+ +R V
Sbjct: 215 LKRFFQDKRPV 225


>gi|98986464 transmembrane emp24 domain-containing protein 10
           precursor [Homo sapiens]
          Length = 219

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 45/202 (22%), Positives = 97/202 (48%), Gaps = 10/202 (4%)

Query: 7   LLVLLAALLATVSGYFVSIDAHAEECFFERVTSGTKMGLIFEVAE----GGFLDIDVEIT 62
           LL LL   L     + + I++   +C  E +     +   +E+++     G L   ++IT
Sbjct: 20  LLFLLGPRLVLAISFHLPINSR--KCLREEIHKDLLVTGAYEISDQSGGAGGLRSHLKIT 77

Query: 63  GPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDME 122
                 +Y  +  + GK+ F       ++ CF ++ +   P  ++  +D+    + ++ E
Sbjct: 78  DSAGHILYSKEDATKGKFAFTTEDYDMFEVCFESKGTGRIPDQLVI-LDMKHGVEAKNYE 136

Query: 123 TEAHQNKLEEM---INELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALV 179
             A   KL+ +   +  L     ++ ++  YM+ RE   R  N++TN+RV+ +S F    
Sbjct: 137 EIAKVEKLKPLEVELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNTRVLYFSIFSMFC 196

Query: 180 LVAMTLGQIYYLKRFFEVRRVV 201
           L+ +   Q++YL+RFF+ ++++
Sbjct: 197 LIGLATWQVFYLRRFFKAKKLI 218


>gi|21389573 transmembrane emp24 protein transport domain containing
           6 [Homo sapiens]
          Length = 240

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 6/126 (4%)

Query: 78  GKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIG-EAPKGQDMETEAHQ-----NKLE 131
           G+  F+    G Y+ C SN+ +      V     +  E P+    + E  Q     + +E
Sbjct: 104 GQINFSTQETGFYQLCLSNQHNHFGSVQVYLNFGVFYEGPETDHKQKERKQLNDTLDAIE 163

Query: 132 EMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYL 191
           +   ++   +  +     +  +R+     +  +  + V  WS  ++LV++   + Q+Y+L
Sbjct: 164 DGTQKVQNNIFHMWRYYNFARMRKMADFFLIQSNYNYVNWWSTAQSLVIILSGILQLYFL 223

Query: 192 KRFFEV 197
           KR F V
Sbjct: 224 KRLFNV 229


>gi|21729876 ATP-binding cassette, sub-family C, member 11 isoform b
           [Homo sapiens]
          Length = 1344

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 13/178 (7%)

Query: 24  SIDAHAEECFFERVTSGTKMG--LIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYT 81
           ++DAH  +  FE     T  G  ++    +  +L+   +I   +N  I +     +G ++
Sbjct: 663 AVDAHVGKHIFEECIKKTLRGKTVVLVTHQLQYLEFCGQIILLENGKICE-----NGTHS 717

Query: 82  FAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAM 141
                 G Y           T  ++  T  I E PK   +E++A    LEE +N  AV  
Sbjct: 718 ELMQKKGKYAQLIQKMHKEATSDMLQDTAKIAEKPK---VESQALATSLEESLNGNAVPE 774

Query: 142 TAVKHEQEYME--VRERI-HRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFE 196
             +  E+E  E  +  R+ H  I       V    FF  +++V +T+   ++L  + E
Sbjct: 775 HQLTQEEEMEEGSLSWRVYHHYIQAAGGYMVSCIIFFFVVLIVFLTIFSFWWLSYWLE 832


>gi|21729873 ATP-binding cassette, sub-family C, member 11 isoform a
           [Homo sapiens]
          Length = 1382

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 13/178 (7%)

Query: 24  SIDAHAEECFFERVTSGTKMG--LIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYT 81
           ++DAH  +  FE     T  G  ++    +  +L+   +I   +N  I +     +G ++
Sbjct: 663 AVDAHVGKHIFEECIKKTLRGKTVVLVTHQLQYLEFCGQIILLENGKICE-----NGTHS 717

Query: 82  FAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAM 141
                 G Y           T  ++  T  I E PK   +E++A    LEE +N  AV  
Sbjct: 718 ELMQKKGKYAQLIQKMHKEATSDMLQDTAKIAEKPK---VESQALATSLEESLNGNAVPE 774

Query: 142 TAVKHEQEYME--VRERI-HRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFE 196
             +  E+E  E  +  R+ H  I       V    FF  +++V +T+   ++L  + E
Sbjct: 775 HQLTQEEEMEEGSLSWRVYHHYIQAAGGYMVSCIIFFFVVLIVFLTIFSFWWLSYWLE 832


>gi|15149474 ATP-binding cassette, sub-family C, member 11 isoform a
           [Homo sapiens]
          Length = 1382

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 13/178 (7%)

Query: 24  SIDAHAEECFFERVTSGTKMG--LIFEVAEGGFLDIDVEITGPDNKGIYKGDRESSGKYT 81
           ++DAH  +  FE     T  G  ++    +  +L+   +I   +N  I +     +G ++
Sbjct: 663 AVDAHVGKHIFEECIKKTLRGKTVVLVTHQLQYLEFCGQIILLENGKICE-----NGTHS 717

Query: 82  FAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAM 141
                 G Y           T  ++  T  I E PK   +E++A    LEE +N  AV  
Sbjct: 718 ELMQKKGKYAQLIQKMHKEATSDMLQDTAKIAEKPK---VESQALATSLEESLNGNAVPE 774

Query: 142 TAVKHEQEYME--VRERI-HRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFE 196
             +  E+E  E  +  R+ H  I       V    FF  +++V +T+   ++L  + E
Sbjct: 775 HQLTQEEEMEEGSLSWRVYHHYIQAAGGYMVSCIIFFFVVLIVFLTIFSFWWLSYWLE 832


>gi|68163411 activated leukocyte cell adhesion molecule [Homo
           sapiens]
          Length = 583

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 127 QNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLG 186
           +N+LE  +N L V+  ++    E  E+ +     +ND      ++      L+L A+  G
Sbjct: 488 ENQLERTVNSLNVSAISIPEHDEADEISDENREKVNDQAK---LIVGIVVGLLLAALVAG 544

Query: 187 QIYYL 191
            +Y+L
Sbjct: 545 VVYWL 549


>gi|40255109 GrpE-like 2, mitochondrial [Homo sapiens]
          Length = 225

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 118 GQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSR 168
           G+D  +E   ++L   + E A+ + AVK E+E  ++  R  RAI D  N R
Sbjct: 41  GEDCRSEDPPDELGPPLAERALRVKAVKLEKEVQDLTVRYQRAIADCENIR 91


>gi|149274621 centrosomal protein 78kDa isoform a [Homo sapiens]
          Length = 722

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 8/74 (10%)

Query: 112 IGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEY-MEVRERIHRAINDNTNSRVV 170
           + E P+   +E EA Q KLEE + +L       K E+   ++V +R+    ++N   R +
Sbjct: 446 VHEVPEKTSIEQEALQEKLEECLKQL-------KEERVIRLKVDKRVSELEHENAQLRNI 498

Query: 171 LWSFFEALVLVAMT 184
            +S  EAL   ++T
Sbjct: 499 NFSLSEALHAQSLT 512


>gi|149274651 centrosomal protein 78kDa isoform b [Homo sapiens]
          Length = 706

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 8/74 (10%)

Query: 112 IGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEY-MEVRERIHRAINDNTNSRVV 170
           + E P+   +E EA Q KLEE + +L       K E+   ++V +R+    ++N   R +
Sbjct: 446 VHEVPEKTSIEQEALQEKLEECLKQL-------KEERVIRLKVDKRVSELEHENAQLRNI 498

Query: 171 LWSFFEALVLVAMT 184
            +S  EAL   ++T
Sbjct: 499 NFSLSEALHAQSLT 512


>gi|110611218 ribosome binding protein 1 [Homo sapiens]
          Length = 977

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 110 IDIGEAPKGQDME-TEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSR 168
           ++ G+A   QD++ ++A  ++ +  + EL   ++ +  E+E +E+RE + +    N + R
Sbjct: 531 LEAGQARDAQDVQASQAEADQQQTRLKELESQVSGL--EKEAIELREAVEQQKVKNNDLR 588

Query: 169 VVLWSFFEAL 178
              W   EAL
Sbjct: 589 EKNWKAMEAL 598


>gi|110611220 ribosome binding protein 1 [Homo sapiens]
          Length = 977

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 110 IDIGEAPKGQDME-TEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSR 168
           ++ G+A   QD++ ++A  ++ +  + EL   ++ +  E+E +E+RE + +    N + R
Sbjct: 531 LEAGQARDAQDVQASQAEADQQQTRLKELESQVSGL--EKEAIELREAVEQQKVKNNDLR 588

Query: 169 VVLWSFFEAL 178
              W   EAL
Sbjct: 589 EKNWKAMEAL 598


>gi|7662280 histone deacetylase 9 isoform 3 [Homo sapiens]
          Length = 590

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 112 IGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHR 159
           I E  K  +  T  HQ +L+E I EL     A+K +QE +E  +++ +
Sbjct: 65  IAEFQKQHENLTRQHQAQLQEHIKEL----LAIKQQQELLEKEQKLEQ 108


>gi|17158041 histone deacetylase 9 isoform 2 [Homo sapiens]
          Length = 879

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 112 IGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHR 159
           I E  K  +  T  HQ +L+E I EL     A+K +QE +E  +++ +
Sbjct: 65  IAEFQKQHENLTRQHQAQLQEHIKEL----LAIKQQQELLEKEQKLEQ 108


>gi|17158039 histone deacetylase 9 isoform 1 [Homo sapiens]
          Length = 1011

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 112 IGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHR 159
           I E  K  +  T  HQ +L+E I EL     A+K +QE +E  +++ +
Sbjct: 65  IAEFQKQHENLTRQHQAQLQEHIKEL----LAIKQQQELLEKEQKLEQ 108


>gi|30795202 histone deacetylase 9 isoform 4 [Homo sapiens]
          Length = 1066

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 112 IGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHR 159
           I E  K  +  T  HQ +L+E I EL     A+K +QE +E  +++ +
Sbjct: 65  IAEFQKQHENLTRQHQAQLQEHIKEL----LAIKQQQELLEKEQKLEQ 108


>gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo
           sapiens]
          Length = 820

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 103 PKIVMFTIDIGEAPKGQDMETEAHQNKLEE------MINELAVAMTAVKHEQEYMEVRER 156
           PK +       EA K +  E E  Q  LEE         +L   M     E+E  E RER
Sbjct: 161 PKFLSKAEREAEALKRRQQEVEERQRMLEEERKKRKQFQDLGRKMLEDPQERERRERRER 220

Query: 157 IHRAINDN 164
           + R  N N
Sbjct: 221 MERETNGN 228


>gi|118918413 MICAL C-terminal like [Homo sapiens]
          Length = 695

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query: 119 QDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRE 155
           Q++E E HQ++LE+ + E  +   + K E++  E +E
Sbjct: 612 QELELEDHQSRLEQKLREKMLKEESQKDEKDLNEEQE 648


>gi|239753316 PREDICTED: similar to Rho guanine nucleotide exchange
           factor 4 [Homo sapiens]
          Length = 368

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 72  GDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLE 131
           G++ S      A HM+   K CF+  M T     +      GEAP     +     ++  
Sbjct: 8   GEKPSCSHSQKAFHMEPAQKPCFTTDMVTWALLCISAETVRGEAPS----QPRGIPHRSP 63

Query: 132 EMINELAVAMTAVKHEQEYMEVRERIH 158
             +++L +  T  K  Q+   V  R+H
Sbjct: 64  VSVDDLWLEKTQRKKLQKQAHVERRLH 90


>gi|109134330 PHD finger protein 20-like 1 isoform 2 [Homo sapiens]
          Length = 573

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 81  TFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETE-AHQNKLEEMINELAV 139
           TF  H++   K  F    ST++ K         +  +G   + + A  NK+  ++   AV
Sbjct: 239 TFGLHVENVPKMVFPQPESTLSNK--------RKNNQGNSFQAKRARLNKITGLLASKAV 290

Query: 140 AMTAVKHEQEYMEVRERIHRAINDNTNSR 168
            +   + +++Y E    + +AI+    S+
Sbjct: 291 GVDGAEKKEDYNETAPMLEQAISPKPQSQ 319


>gi|111120331 PHD finger protein 20-like 1 isoform 1 [Homo sapiens]
          Length = 1017

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 81  TFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETE-AHQNKLEEMINELAV 139
           TF  H++   K  F    ST++ K         +  +G   + + A  NK+  ++   AV
Sbjct: 239 TFGLHVENVPKMVFPQPESTLSNK--------RKNNQGNSFQAKRARLNKITGLLASKAV 290

Query: 140 AMTAVKHEQEYMEVRERIHRAINDNTNSR 168
            +   + +++Y E    + +AI+    S+
Sbjct: 291 GVDGAEKKEDYNETAPMLEQAISPKPQSQ 319


>gi|15011979 Rho guanine nucleotide exchange factor 4 isoform a
           [Homo sapiens]
          Length = 690

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 72  GDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLE 131
           G++ S      A HM+   K CF+  M T     +      GEAP     +     ++  
Sbjct: 8   GEKPSCSHSQKAFHMEPAQKPCFTTDMVTWALLCISAETVRGEAPS----QPRGIPHRSP 63

Query: 132 EMINELAVAMTAVKHEQEYMEVRERIH 158
             +++L +  T  K  Q+   V  R+H
Sbjct: 64  VSVDDLWLEKTQRKKLQKQAHVERRLH 90


>gi|15011981 Rho guanine nucleotide exchange factor 4 isoform b
           [Homo sapiens]
          Length = 670

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 72  GDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLE 131
           G++ S      A HM+   K CF+  M T     +      GEAP     +     ++  
Sbjct: 8   GEKPSCSHSQKAFHMEPAQKPCFTTDMVTWALLCISAETVRGEAPS----QPRGIPHRSP 63

Query: 132 EMINELAVAMTAVKHEQEYMEVRERIH 158
             +++L +  T  K  Q+   V  R+H
Sbjct: 64  VSVDDLWLEKTQRKKLQKQAHVERRLH 90


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,282,006
Number of Sequences: 37866
Number of extensions: 246176
Number of successful extensions: 660
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 639
Number of HSP's gapped (non-prelim): 29
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.