| Name: TMED5 | Sequence: fasta or formatted (229aa) | NCBI GI: 19923442 | |
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Description: transmembrane emp24 protein transport domain containing 5
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Referenced in: ER, Golgi, and the Secretory Pathway
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 5.2 12 2 C cysteine 0.9 2 1 D aspartate 7.4 17 1 E glutamate 7.4 17 1 F phenylalanine 7.0 16 2 G glycine 5.2 12 1 H histidine 1.3 3 1 I isoleucine 6.6 15 1 K lysine 6.1 14 2 L leucine 11.4 26 3 M methionine 3.5 8 1 N asparagine 3.1 7 1 P proline 4.4 10 2 Q glutamine 4.4 10 1 R arginine 3.5 8 1 S serine 7.4 17 1 T threonine 4.8 11 1 V valine 7.0 16 3 W tryptophan 1.3 3 1 Y tyrosine 2.2 5 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 transmembrane emp24 protein transport domain contain... TMED1 0.500 interleukin 1 receptor-like 1 ligand precursor TMED7 0.183 transmembrane emp24 protein transport domain contain... TMED3 0.176 transmembrane emp24 domain containing 3 TMED2 0.141 coated vesicle membrane protein TMED6 0.079 transmembrane emp24 protein transport domain contain... TMED9 0.051 transmembrane emp24 protein transport domain contain... TMED4 0.046 transmembrane emp24 protein transport domain contain... LOC100293213 0.014 PREDICTED: hypothetical protein FYCO1 0.014 FYVE and coiled-coil domain containing 1 LOC100291254 0.012 PREDICTED: hypothetical protein XP_002346620 LOC100289216 0.012 PREDICTED: hypothetical protein XP_002342414 SEC14L3 0.012 SEC14-like 3 NACAD 0.009 NAC alpha domain containing ACTBL3 0.009 PREDICTED: actin, beta-like 3 ACTBL3 0.009 PREDICTED: actin, beta-like 3 NACAD 0.009 PREDICTED: NAC alpha domain containing ACTBL3 0.009 PREDICTED: kappa-actin CEP70 0.009 centrosomal protein 70 kDa HGS 0.009 hepatocyte growth factor-regulated tyrosine kinase su... ARL11 0.009 ADP-ribosylation factor-like 11 POTEE 0.009 protein expressed in prostate, ovary, testis, and p... LOC653269 0.009 PREDICTED: similar to protein expressed in prostate... LOC653269 0.009 PREDICTED: similar to protein expressed in prostate,... KRT5 0.007 keratin 5 HOMER1 0.007 homer 1 RGSL1 0.007 regulator of G-protein signaling like 1 C12orf60 0.007 hypothetical protein LOC144608 POTEF 0.007 prostate, ovary, testis expressed protein on chromo... CALCOCO1 0.007 coiled-coil transcriptional coactivator isoform 2 [...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
