Guide to the Human Genome
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Name: CCNL2 Sequence: fasta or formatted (520aa) NCBI GI: 88758580
Description:

cyclin L2 isoform A

Referenced in:

Cyclins and Related Functions

Other entries for this name:
alt prot [236aa] cyclin L2 isoform C
alt prot [227aa] cyclin L2 isoform D
alt prot [226aa] cyclin L2 isoform B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         43           7
 C cysteine            1.7          9           1
 D aspartate           4.0         21           2
 E glutamate           6.0         31           3
 F phenylalanine       2.3         12           2
 G glycine             6.7         35           2
 H histidine           3.1         16           1
 I isoleucine          3.7         19           2
 K lysine              7.9         41           3
 L leucine             8.5         44           3
 M methionine          1.3          7           1
 N asparagine          2.1         11           1
 P proline             6.2         32           2
 Q glutamine           4.0         21           1
 R arginine           11.2         58           2
 S serine             11.3         59           3
 T threonine           3.3         17           1
 V valine              5.2         27           2
 W tryptophan          0.4          2           1
 Y tyrosine            2.9         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cyclin L2 isoform A 
CCNL1                 0.552   cyclin L1 
CCNL2                 0.408   cyclin L2 isoform C 
CCNL2                 0.407   cyclin L2 isoform D 
CCNL2                 0.407   cyclin L2 isoform B 
CCNK                  0.089   cyclin K isoform 1 
CCNK                  0.089   cyclin K isoform 2 
CCNT2                 0.075   cyclin T2 isoform b 
CCNT2                 0.075   cyclin T2 isoform a 
CCNT1                 0.073   cyclin T1 
FAM58A                0.069   family with sequence similarity 58, member A isofor...
FAM58A                0.067   family with sequence similarity 58, member A isofor...
FAM58B                0.058   family with sequence similarity 58 member B 
CCNC                  0.054   cyclin C isoform a 
LOC100170229          0.052   hypothetical protein LOC100170229 
SFRS4                 0.047   splicing factor, arginine/serine-rich 4 
ZRANB2                0.046   zinc finger protein 265 isoform 1 
SFRS11                0.044   splicing factor, arginine/serine-rich 11 
SFRS16                0.043   splicing factor, arginine/serine-rich 16 
SFRS6                 0.042   arginine/serine-rich splicing factor 6 
PPIG                  0.042   peptidylprolyl isomerase G 
SRRM2                 0.042   splicing coactivator subunit SRm300 
PRPF38B               0.041   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
ZRANB2                0.041   zinc finger protein 265 isoform 2 
SFRS5                 0.041   splicing factor, arginine/serine-rich 5 
SFRS5                 0.041   splicing factor, arginine/serine-rich 5 
CHERP                 0.040   calcium homeostasis endoplasmic reticulum protein [...
C1orf63               0.040   hypothetical protein LOC57035 
DDX46                 0.040   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
RSRC2                 0.040   arginine/serine-rich coiled-coil 2 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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