Guide to the Human Genome
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Name: CDKN2AIP Sequence: fasta or formatted (580aa) NCBI GI: 8923040
Description:

CDKN2A interacting protein

Referenced in:

RNA-binding Proteins
p53 Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         53           2
 C cysteine            1.4          8           1
 D aspartate           3.3         19           1
 E glutamate           6.7         39           2
 F phenylalanine       1.9         11           2
 G glycine             5.3         31           2
 H histidine           1.4          8           1
 I isoleucine          2.2         13           1
 K lysine              8.3         48           3
 L leucine             8.8         51           2
 M methionine          0.9          5           1
 N asparagine          3.4         20           1
 P proline             3.4         20           2
 Q glutamine           4.7         27           2
 R arginine            3.8         22           2
 S serine             21.2        123           4
 T threonine           5.7         33           2
 V valine              6.7         39           3
 W tryptophan          0.7          4           1
 Y tyrosine            1.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CDKN2A interacting protein 
DSPP                  0.070   dentin sialophosphoprotein preproprotein 
MUC21                 0.069   mucin 21 
NKRF                  0.063   transcription factor NRF 
CDKN2AIPNL            0.058   CDKN2A interacting protein N-terminal like 
LOC729792             0.049   PREDICTED: hypothetical protein 
LOC729792             0.049   PREDICTED: hypothetical protein 
LOC729792             0.049   PREDICTED: hypothetical protein 
LOC100294501          0.049   PREDICTED: hypothetical protein 
LOC100294238          0.049   PREDICTED: hypothetical protein 
LOC100294204          0.049   PREDICTED: hypothetical protein 
LOC100294136          0.049   PREDICTED: hypothetical protein 
LOC100294091          0.049   PREDICTED: hypothetical protein 
LOC730401             0.049   PREDICTED: hypothetical protein 
LOC100294249          0.049   PREDICTED: hypothetical protein XP_002344067 
LOC729815             0.048   PREDICTED: hypothetical protein 
LOC729815             0.047   PREDICTED: hypothetical protein 
MED1                  0.038   mediator complex subunit 1 
TNRC18                0.038   trinucleotide repeat containing 18 
MUC17                 0.035   mucin 17 
MUC12                 0.035   PREDICTED: mucin 12 
MUC3A                 0.035   PREDICTED: mucin 3A, cell surface associated, parti...
LOC100133408          0.034   PREDICTED: similar to mucin 
SRRM2                 0.033   splicing coactivator subunit SRm300 
MUC3B                 0.033   PREDICTED: mucin 3B, cell surface associated, parti...
MUC3A                 0.033   PREDICTED: mucin 3A, intestinal 
LOC100133915          0.033   PREDICTED: hypothetical protein 
MUC12                 0.032   PREDICTED: mucin 12 
MUC12                 0.032   PREDICTED: mucin 12, cell surface associated 
LOC100134138          0.031   PREDICTED: similar to mucin, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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