Guide to the Human Genome
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Name: USP16 Sequence: fasta or formatted (823aa) NCBI GI: 75992941
Description:

ubiquitin specific protease 16 isoform a

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [822aa] ubiquitin specific protease 16 isoform b
alt mRNA [823aa] ubiquitin specific protease 16 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         35           2
 C cysteine            3.0         25           1
 D aspartate           5.3         44           2
 E glutamate           9.2         76           3
 F phenylalanine       2.4         20           2
 G glycine             4.7         39           2
 H histidine           2.9         24           1
 I isoleucine          4.0         33           1
 K lysine             10.2         84           3
 L leucine             9.5         78           2
 M methionine          2.3         19           1
 N asparagine          7.3         60           1
 P proline             4.0         33           2
 Q glutamine           5.6         46           3
 R arginine            3.6         30           2
 S serine              6.6         54           2
 T threonine           5.3         44           2
 V valine              6.6         54           2
 W tryptophan          0.6          5           1
 Y tyrosine            2.4         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin specific protease 16 isoform a 
USP16                 1.000   ubiquitin specific protease 16 isoform a 
USP16                 0.996   ubiquitin specific protease 16 isoform b 
USP45                 0.320   ubiquitin specific peptidase 45 
USP33                 0.066   ubiquitin specific protease 33 isoform 3 
USP3                  0.046   ubiquitin thiolesterase 3 
USP15                 0.043   ubiquitin specific peptidase 15 
USP33                 0.040   ubiquitin specific protease 33 isoform 1 
USP33                 0.039   ubiquitin specific protease 33 isoform 2 
USP4                  0.039   ubiquitin specific protease 4 isoform a 
USP4                  0.039   ubiquitin specific protease 4 isoform b 
USP2                  0.039   ubiquitin specific peptidase 2 isoform a 
USP2                  0.038   ubiquitin specific peptidase 2 isoform b 
USP51                 0.038   ubiquitin specific protease 51 
USP19                 0.038   ubiquitin thioesterase 19 
USP22                 0.038   ubiquitin thiolesterase 22 
USP6                  0.037   ubiquitin specific protease 6 
USP32                 0.037   ubiquitin specific protease 32 
USP8                  0.037   ubiquitin specific peptidase 8 
USP8                  0.037   ubiquitin specific peptidase 8 
USP8                  0.037   ubiquitin specific peptidase 8 
USP11                 0.036   ubiquitin specific peptidase 11 
USP27X                0.036   X-linked ubiquitin thioesterase 27 
USP44                 0.035   ubiquitin thiolesterase 44 
USP44                 0.035   ubiquitin thiolesterase 44 
USP20                 0.033   ubiquitin specific protease 20 
USP20                 0.033   ubiquitin specific protease 20 
USP20                 0.033   ubiquitin specific protease 20 
LOC100287327          0.033   PREDICTED: hypothetical protein XP_002342475 
LOC100287238          0.033   PREDICTED: hypothetical protein XP_002342474 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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