Guide to the Human Genome
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Name: USP45 Sequence: fasta or formatted (814aa) NCBI GI: 122937412
Description:

ubiquitin specific peptidase 45

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         44           2
 C cysteine            3.1         25           1
 D aspartate           5.0         41           2
 E glutamate           7.4         60           2
 F phenylalanine       3.4         28           2
 G glycine             4.4         36           2
 H histidine           2.9         24           1
 I isoleucine          4.4         36           3
 K lysine              8.6         70           3
 L leucine            10.1         82           2
 M methionine          2.0         16           1
 N asparagine          4.9         40           2
 P proline             3.7         30           1
 Q glutamine           4.5         37           3
 R arginine            4.7         38           2
 S serine             10.7         87           3
 T threonine           6.0         49           2
 V valine              5.3         43           2
 W tryptophan          0.7          6           1
 Y tyrosine            2.7         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin specific peptidase 45 
USP16                 0.328   ubiquitin specific protease 16 isoform b 
USP16                 0.327   ubiquitin specific protease 16 isoform a 
USP16                 0.327   ubiquitin specific protease 16 isoform a 
USP33                 0.068   ubiquitin specific protease 33 isoform 3 
USP33                 0.066   ubiquitin specific protease 33 isoform 1 
USP33                 0.066   ubiquitin specific protease 33 isoform 2 
USP4                  0.063   ubiquitin specific protease 4 isoform a 
USP4                  0.063   ubiquitin specific protease 4 isoform b 
USP3                  0.043   ubiquitin thiolesterase 3 
USP44                 0.040   ubiquitin thiolesterase 44 
USP44                 0.040   ubiquitin thiolesterase 44 
USP51                 0.039   ubiquitin specific protease 51 
USP1                  0.038   ubiquitin specific protease 1 
USP1                  0.038   ubiquitin specific protease 1 
USP1                  0.038   ubiquitin specific protease 1 
USP2                  0.035   ubiquitin specific peptidase 2 isoform b 
USP2                  0.035   ubiquitin specific peptidase 2 isoform a 
USP19                 0.035   ubiquitin thioesterase 19 
USP27X                0.034   X-linked ubiquitin thioesterase 27 
USP22                 0.034   ubiquitin thiolesterase 22 
USP11                 0.034   ubiquitin specific peptidase 11 
USP8                  0.033   ubiquitin specific peptidase 8 
USP8                  0.033   ubiquitin specific peptidase 8 
USP8                  0.033   ubiquitin specific peptidase 8 
USP20                 0.033   ubiquitin specific protease 20 
USP20                 0.033   ubiquitin specific protease 20 
USP20                 0.033   ubiquitin specific protease 20 
USP15                 0.032   ubiquitin specific peptidase 15 
USP36                 0.031   ubiquitin specific peptidase 36 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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