Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 5730027
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5730027 KH domain containing, RNA binding, signal
transduction associated 1 [Homo sapiens]
(443 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5730027 KH domain containing, RNA binding, signal transductio... 920 0.0
gi|189217895 KH domain-containing, RNA-binding, signal transduct... 429 e-120
gi|5730073 KH domain containing, RNA binding, signal transductio... 375 e-104
gi|45827712 quaking homolog, KH domain RNA binding isoform HQK-7... 134 2e-31
gi|45827710 quaking homolog, KH domain RNA binding isoform HQK-7... 134 2e-31
gi|45827708 quaking homolog, KH domain RNA binding isoform HQK-6... 134 2e-31
gi|45827706 quaking homolog, KH domain RNA binding isoform HQK-5... 134 2e-31
gi|42544123 splicing factor 1 isoform 3 [Homo sapiens] 67 3e-11
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 67 3e-11
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 67 3e-11
gi|14165439 heterogeneous nuclear ribonucleoprotein K isoform a ... 55 1e-07
gi|14165435 heterogeneous nuclear ribonucleoprotein K isoform b ... 55 1e-07
gi|14165437 heterogeneous nuclear ribonucleoprotein K isoform a ... 55 1e-07
gi|55741675 hypothetical protein LOC22889 [Homo sapiens] 53 5e-07
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 50 4e-06
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 50 5e-06
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 50 5e-06
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 49 7e-06
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 49 7e-06
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 49 1e-05
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 48 2e-05
gi|160707881 formin 2 [Homo sapiens] 48 2e-05
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 48 2e-05
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 47 3e-05
gi|6382071 diaphanous 2 isoform 12C [Homo sapiens] 47 5e-05
gi|5803003 diaphanous 2 isoform 156 [Homo sapiens] 47 5e-05
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 46 6e-05
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 45 1e-04
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 45 2e-04
gi|147902746 MEX3A protein [Homo sapiens] 45 2e-04
>gi|5730027 KH domain containing, RNA binding, signal transduction
associated 1 [Homo sapiens]
Length = 443
Score = 920 bits (2377), Expect = 0.0
Identities = 443/443 (100%), Positives = 443/443 (100%)
Query: 1 MQRRDDPAARMSRSSGRSGSMDPSGAHPSVRQTPSRQPPLPHRSRGGGGGSRGGARASPA 60
MQRRDDPAARMSRSSGRSGSMDPSGAHPSVRQTPSRQPPLPHRSRGGGGGSRGGARASPA
Sbjct: 1 MQRRDDPAARMSRSSGRSGSMDPSGAHPSVRQTPSRQPPLPHRSRGGGGGSRGGARASPA 60
Query: 61 TQPPPLLPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTH 120
TQPPPLLPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTH
Sbjct: 61 TQPPPLLPPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEKDSLDPSFTH 120
Query: 121 AMQLLTAEIEKIQKGDSKKDDEENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQ 180
AMQLLTAEIEKIQKGDSKKDDEENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQ
Sbjct: 121 AMQLLTAEIEKIQKGDSKKDDEENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQ 180
Query: 181 GNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEA 240
GNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEA
Sbjct: 181 GNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEA 240
Query: 241 YALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGAAPPPPPV 300
YALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGAAPPPPPV
Sbjct: 241 YALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPEPSRGRGVPVRGRGAAPPPPPV 300
Query: 301 PRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPP 360
PRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPP
Sbjct: 301 PRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPP 360
Query: 361 PAPETYEEYGYDDTYAEQSYEGYEGYYSQSQGDSEYYDYGHGEVQDSYEAYGQDDWNGTR 420
PAPETYEEYGYDDTYAEQSYEGYEGYYSQSQGDSEYYDYGHGEVQDSYEAYGQDDWNGTR
Sbjct: 361 PAPETYEEYGYDDTYAEQSYEGYEGYYSQSQGDSEYYDYGHGEVQDSYEAYGQDDWNGTR 420
Query: 421 PSLKAPPARPVKGAYREHPYGRY 443
PSLKAPPARPVKGAYREHPYGRY
Sbjct: 421 PSLKAPPARPVKGAYREHPYGRY 443
>gi|189217895 KH domain-containing, RNA-binding, signal
transduction-associated protein 2 [Homo sapiens]
Length = 349
Score = 429 bits (1102), Expect = e-120
Identities = 225/364 (61%), Positives = 262/364 (71%), Gaps = 37/364 (10%)
Query: 100 ENKYLPELMAEKDSLDPSFTHAMQLLTAEIEKIQKGDSKKDDEEN-YLDLFSHKNMKLKE 158
E KYLPELMAEKDSLDPSF HA +LL EIEK Q D KK+DEE YLD+ S+KN+KL E
Sbjct: 3 EEKYLPELMAEKDSLDPSFVHASRLLAEEIEKFQGSDGKKEDEEKKYLDVISNKNIKLSE 62
Query: 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDP 218
RVLIPVKQYPKFNFVGK+LGP+GN++KRLQEETGAK+S+LGKGSMRDKAKEEELRK G+
Sbjct: 63 RVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKAKEEELRKSGEA 122
Query: 219 KYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVP 278
KYAHL+ +LHV IEVF PP EAY+ M+HA+EE+KKFLVPD D+I QEQ ELSYLNG
Sbjct: 123 KYAHLSDELHVLIEVFAPPGEAYSRMSHALEEIKKFLVPDYNDEIRQEQLRELSYLNGSE 182
Query: 279 EPSRGRGV-----------PVRGRGAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGA 327
+ RGRG+ P RGRG A PPPP P GRGV PRG+ +TRGA
Sbjct: 183 DSGRGRGIRGRGIRIAPTAPSRGRGGAIPPPP-PPGRGVLTPRGS---------TVTRGA 232
Query: 328 TVTRGVPPPPTVRGAPAPRARTAGIQRIP---LPPPPAPETYEEYGYDDTYA----EQSY 380
+P PP RG P PRAR G +P PPPPA E YEEYGYDD Y +Q+Y
Sbjct: 233 -----LPVPPVARGVPTPRAR--GAPTVPGYRAPPPPAHEAYEEYGYDDGYGGEYDDQTY 285
Query: 381 EGYE-GYYSQSQGDSEYYDYGHGEVQDSYEAYGQDDWNGTRPSLKAPPARPVKGAYREHP 439
E Y+ Y +Q+Q EYYDYGHG +D+Y++Y ++W TR SLKAPP R +G YREHP
Sbjct: 286 ETYDNSYATQTQSVPEYYDYGHGVSEDAYDSYAPEEWATTRSSLKAPPQRSARGGYREHP 345
Query: 440 YGRY 443
YGRY
Sbjct: 346 YGRY 349
>gi|5730073 KH domain containing, RNA binding, signal transduction
associated 3 [Homo sapiens]
Length = 346
Score = 375 bits (964), Expect = e-104
Identities = 208/360 (57%), Positives = 252/360 (70%), Gaps = 31/360 (8%)
Query: 100 ENKYLPELMAEKDSLDPSFTHAMQLLTAEIEKIQKGDSKKDDEENYLDLFSHKNMKLKER 159
E KYLPELMAEKDSLDPSFTHA++L+ EIEK QKG+ K DEE Y+D+ +KNMKL ++
Sbjct: 2 EEKYLPELMAEKDSLDPSFTHALRLVNQEIEKFQKGEGK--DEEKYIDVVINKNMKLGQK 59
Query: 160 VLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPK 219
VLIPVKQ+PKFNFVGK+LGP+GN++KRLQEET K+S+LGKGSMRDKAKEEELRK G+ K
Sbjct: 60 VLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAK 119
Query: 220 YAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPE 279
Y HLN DLHV IEVF PP EAYA M HA+EE+KKFL+PD D+I Q Q EL+YLNG E
Sbjct: 120 YFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSE 179
Query: 280 PSR---GRGVP-VRGRGAAPPPPPVPRGRG--VGPPRGALV-RGTPV-RGAITRGATVTR 331
+ RG P +R RG P P + RGRG P G +V RGTP RG ++ V+R
Sbjct: 180 NADVPVVRGKPTLRTRGV--PAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSR 237
Query: 332 GVPPPPTVRGAPAPRAR---TAGIQRIPLPPPPAPETYEEYGYDD----TYAEQSYEGYE 384
G RG PRAR G + P PPPP ETY EY YDD Y EQSY+ Y+
Sbjct: 238 G-------RGLLTPRARGVPPTGYR--PPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYD 288
Query: 385 GYYS-QSQGDSEYYDYGHGEVQDSYEAYGQDDWNGTRPSLKAPPARPVKGAYREHPYGRY 443
YS +Q ++YYDYGHG +++Y++YGQ++W +R KAP AR KG YR+ PYGRY
Sbjct: 289 NSYSTPAQSGADYYDYGHGLSEETYDSYGQEEWTNSRH--KAPSARTAKGVYRDQPYGRY 346
>gi|45827712 quaking homolog, KH domain RNA binding isoform HQK-7B
[Homo sapiens]
Length = 319
Score = 134 bits (336), Expect = 2e-31
Identities = 107/299 (35%), Positives = 143/299 (47%), Gaps = 31/299 (10%)
Query: 96 KMEPENKYLPELMAEKDSLDPS------FTHAMQLLTAEIEKIQK--------GDSKKDD 141
K +P YL +LM +K + F H +LL EI +++K G ++K
Sbjct: 10 KPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDTLNGSTEKRS 69
Query: 142 EENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKG 201
E L ++L+E++ +PVK+YP FNFVG+ILGP+G T K+L+ ETG KI V GKG
Sbjct: 70 AE--LPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKG 127
Query: 202 SMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DM 259
SMRDK KEE+ R G P + HLN DLHV I V A + A+EEVKK LVP +
Sbjct: 128 SMRDKKKEEQNR--GKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEG 185
Query: 260 MDDICQEQFLELSYLNGVPEPS--RGRGVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGT 317
D + + Q +EL+ LNG + + + A P + G P AL T
Sbjct: 186 EDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAALRTPT 245
Query: 318 PVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPPPAPETYEEYGYDDTYA 376
P I + R + G P P A I P P A Y Y Y T A
Sbjct: 246 PAGPTI---MPLIRQIQTAVMPNGTPHPTA------AIVPPGPEAGLIYTPYEYPYTLA 295
>gi|45827710 quaking homolog, KH domain RNA binding isoform HQK-7
[Homo sapiens]
Length = 325
Score = 134 bits (336), Expect = 2e-31
Identities = 107/299 (35%), Positives = 143/299 (47%), Gaps = 31/299 (10%)
Query: 96 KMEPENKYLPELMAEKDSLDPS------FTHAMQLLTAEIEKIQK--------GDSKKDD 141
K +P YL +LM +K + F H +LL EI +++K G ++K
Sbjct: 10 KPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDTLNGSTEKRS 69
Query: 142 EENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKG 201
E L ++L+E++ +PVK+YP FNFVG+ILGP+G T K+L+ ETG KI V GKG
Sbjct: 70 AE--LPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKG 127
Query: 202 SMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DM 259
SMRDK KEE+ R G P + HLN DLHV I V A + A+EEVKK LVP +
Sbjct: 128 SMRDKKKEEQNR--GKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEG 185
Query: 260 MDDICQEQFLELSYLNGVPEPS--RGRGVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGT 317
D + + Q +EL+ LNG + + + A P + G P AL T
Sbjct: 186 EDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAALRTPT 245
Query: 318 PVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPPPAPETYEEYGYDDTYA 376
P I + R + G P P A I P P A Y Y Y T A
Sbjct: 246 PAGPTI---MPLIRQIQTAVMPNGTPHPTA------AIVPPGPEAGLIYTPYEYPYTLA 295
>gi|45827708 quaking homolog, KH domain RNA binding isoform HQK-6
[Homo sapiens]
Length = 319
Score = 134 bits (336), Expect = 2e-31
Identities = 107/299 (35%), Positives = 143/299 (47%), Gaps = 31/299 (10%)
Query: 96 KMEPENKYLPELMAEKDSLDPS------FTHAMQLLTAEIEKIQK--------GDSKKDD 141
K +P YL +LM +K + F H +LL EI +++K G ++K
Sbjct: 10 KPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDTLNGSTEKRS 69
Query: 142 EENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKG 201
E L ++L+E++ +PVK+YP FNFVG+ILGP+G T K+L+ ETG KI V GKG
Sbjct: 70 AE--LPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKG 127
Query: 202 SMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DM 259
SMRDK KEE+ R G P + HLN DLHV I V A + A+EEVKK LVP +
Sbjct: 128 SMRDKKKEEQNR--GKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEG 185
Query: 260 MDDICQEQFLELSYLNGVPEPS--RGRGVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGT 317
D + + Q +EL+ LNG + + + A P + G P AL T
Sbjct: 186 EDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAALRTPT 245
Query: 318 PVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPPPAPETYEEYGYDDTYA 376
P I + R + G P P A I P P A Y Y Y T A
Sbjct: 246 PAGPTI---MPLIRQIQTAVMPNGTPHPTA------AIVPPGPEAGLIYTPYEYPYTLA 295
>gi|45827706 quaking homolog, KH domain RNA binding isoform HQK-5
[Homo sapiens]
Length = 341
Score = 134 bits (336), Expect = 2e-31
Identities = 107/299 (35%), Positives = 143/299 (47%), Gaps = 31/299 (10%)
Query: 96 KMEPENKYLPELMAEKDSLDPS------FTHAMQLLTAEIEKIQK--------GDSKKDD 141
K +P YL +LM +K + F H +LL EI +++K G ++K
Sbjct: 10 KPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRVRKDMYNDTLNGSTEKRS 69
Query: 142 EENYLDLFSHKNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKG 201
E L ++L+E++ +PVK+YP FNFVG+ILGP+G T K+L+ ETG KI V GKG
Sbjct: 70 AE--LPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKG 127
Query: 202 SMRDKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVP--DM 259
SMRDK KEE+ R G P + HLN DLHV I V A + A+EEVKK LVP +
Sbjct: 128 SMRDKKKEEQNR--GKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEG 185
Query: 260 MDDICQEQFLELSYLNGVPEPS--RGRGVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGT 317
D + + Q +EL+ LNG + + + A P + G P AL T
Sbjct: 186 EDSLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPAPVLPPAALRTPT 245
Query: 318 PVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPPPAPETYEEYGYDDTYA 376
P I + R + G P P A I P P A Y Y Y T A
Sbjct: 246 PAGPTI---MPLIRQIQTAVMPNGTPHPTA------AIVPPGPEAGLIYTPYEYPYTLA 295
>gi|42544123 splicing factor 1 isoform 3 [Homo sapiens]
Length = 548
Score = 67.0 bits (162), Expect = 3e-11
Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 20/130 (15%)
Query: 155 KLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRD---KAKEEE 211
++ ++V+IP +YP+ NFVG ++GP+GNT+K +++E AKI + GKGS+++ K+ +
Sbjct: 135 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQ 194
Query: 212 LRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFL-----VPDMMDDICQE 266
+ G D LH + + A+E+++ L P+ +D+ +
Sbjct: 195 MLPGEDE-------PLHALV-----TANTMENVKKAVEQIRNILKQGIETPEDQNDLRKM 242
Query: 267 QFLELSYLNG 276
Q EL+ LNG
Sbjct: 243 QLRELARLNG 252
Score = 33.1 bits (74), Expect = 0.52
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 275 NGVPEPSRGRGV-PVRGRGAAPPPPPVPRGRGVGPPRGAL 313
+GV +G+G+ P G PPPPP P G+ PP G L
Sbjct: 458 SGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPL 497
Score = 32.7 bits (73), Expect = 0.68
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 18/86 (20%)
Query: 295 PPPPPV-----PRGRGVGPPRGALVRGTPVRGAITRGATVTRGV------------PPPP 337
PPPPP+ P G PP + TPV + R +G+ PPPP
Sbjct: 427 PPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYR-LHQGKGMMPPPPMGMMPPPPPPP 485
Query: 338 TVRGAPAPRARTAGIQRIPLPPPPAP 363
+ + P P Q+ PPP P
Sbjct: 486 SGQPPPPPSGPLPPWQQQQQQPPPPP 511
Score = 28.9 bits (63), Expect = 9.8
Identities = 34/119 (28%), Positives = 43/119 (36%), Gaps = 23/119 (19%)
Query: 7 PAARMSRSSGRSGSMDPSGAHPSVRQTPSRQPPL----PHRSR-------GGGGGSRGGA 55
PA S+ R + + PS+ T +PP P SR GG GG GG
Sbjct: 335 PATTPLASAPRPAAPANNPPPPSLMSTTQSRPPWMNSGPSESRPYHGMHGGGPGGPGGG- 393
Query: 56 RASPATQPPPLLPPSATGPDA------TVGGPAPTPLLPPSATASVKMEPENKYLPELM 108
P + P PL PS TG GP P + PP + P + P M
Sbjct: 394 ---PHSFPHPL--PSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPPGHHGPPPM 447
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 67.0 bits (162), Expect = 3e-11
Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 20/130 (15%)
Query: 155 KLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRD---KAKEEE 211
++ ++V+IP +YP+ NFVG ++GP+GNT+K +++E AKI + GKGS+++ K+ +
Sbjct: 135 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQ 194
Query: 212 LRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFL-----VPDMMDDICQE 266
+ G D LH + + A+E+++ L P+ +D+ +
Sbjct: 195 MLPGEDE-------PLHALV-----TANTMENVKKAVEQIRNILKQGIETPEDQNDLRKM 242
Query: 267 QFLELSYLNG 276
Q EL+ LNG
Sbjct: 243 QLRELARLNG 252
Score = 33.1 bits (74), Expect = 0.52
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 275 NGVPEPSRGRGV-PVRGRGAAPPPPPVPRGRGVGPPRGAL 313
+GV +G+G+ P G PPPPP P G+ PP G L
Sbjct: 458 SGVYRLHQGKGMMPPPPMGMMPPPPPPPSGQPPPPPSGPL 497
Score = 32.7 bits (73), Expect = 0.68
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 18/86 (20%)
Query: 295 PPPPPV-----PRGRGVGPPRGALVRGTPVRGAITRGATVTRGV------------PPPP 337
PPPPP+ P G PP + TPV + R +G+ PPPP
Sbjct: 427 PPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYR-LHQGKGMMPPPPMGMMPPPPPPP 485
Query: 338 TVRGAPAPRARTAGIQRIPLPPPPAP 363
+ + P P Q+ PPP P
Sbjct: 486 SGQPPPPPSGPLPPWQQQQQQPPPPP 511
Score = 32.3 bits (72), Expect = 0.89
Identities = 28/108 (25%), Positives = 38/108 (35%), Gaps = 30/108 (27%)
Query: 278 PEPSRGRGVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGTPV----RGAITRGATVTRGV 333
P P G P + + PPPPP PP ++ TP+ T + T +
Sbjct: 490 PPPPSGPLPPWQQQQQQPPPPP--------PPSSSMASSTPLPWQQNTTTTTTSAGTGSI 541
Query: 334 PP-------------PPTVRGAPAPRARTAGIQ-----RIPLPPPPAP 363
PP P ++G P G+Q P PPPP P
Sbjct: 542 PPWQQQQAAAAASPGAPQMQGNPTMVPLPPGVQPPLPPGAPPPPPPPP 589
Score = 28.9 bits (63), Expect = 9.8
Identities = 34/119 (28%), Positives = 43/119 (36%), Gaps = 23/119 (19%)
Query: 7 PAARMSRSSGRSGSMDPSGAHPSVRQTPSRQPPL----PHRSR-------GGGGGSRGGA 55
PA S+ R + + PS+ T +PP P SR GG GG GG
Sbjct: 335 PATTPLASAPRPAAPANNPPPPSLMSTTQSRPPWMNSGPSESRPYHGMHGGGPGGPGGG- 393
Query: 56 RASPATQPPPLLPPSATGPDA------TVGGPAPTPLLPPSATASVKMEPENKYLPELM 108
P + P PL PS TG GP P + PP + P + P M
Sbjct: 394 ---PHSFPHPL--PSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPPGHHGPPPM 447
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 67.0 bits (162), Expect = 3e-11
Identities = 39/130 (30%), Positives = 71/130 (54%), Gaps = 20/130 (15%)
Query: 155 KLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRD---KAKEEE 211
++ ++V+IP +YP+ NFVG ++GP+GNT+K +++E AKI + GKGS+++ K+ +
Sbjct: 135 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQ 194
Query: 212 LRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFL-----VPDMMDDICQE 266
+ G D LH + + A+E+++ L P+ +D+ +
Sbjct: 195 MLPGEDE-------PLHALV-----TANTMENVKKAVEQIRNILKQGIETPEDQNDLRKM 242
Query: 267 QFLELSYLNG 276
Q EL+ LNG
Sbjct: 243 QLRELARLNG 252
Score = 35.0 bits (79), Expect = 0.14
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 296 PPPPVPRGRGVGPPRGALVRGTPVRGAITRGAT--VTRGVPPPPTVRGAPAPRARTAGIQ 353
PP + P ++G P + G + G PPPP P P +AG+
Sbjct: 542 PPWQQQQAAAAASPGAPQMQGNPTMVPLPPGVQPPLPPGAPPPP-----PPPPPGSAGMM 596
Query: 354 RIPLPPPPAP 363
P PPPP P
Sbjct: 597 YAPPPPPPPP 606
Score = 32.7 bits (73), Expect = 0.68
Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 18/86 (20%)
Query: 295 PPPPPV-----PRGRGVGPPRGALVRGTPVRGAITRGATVTRGV------------PPPP 337
PPPPP+ P G PP + TPV + R +G+ PPPP
Sbjct: 427 PPPPPMNQGPHPPGHHGPPPMDQYLGSTPVGSGVYR-LHQGKGMMPPPPMGMMPPPPPPP 485
Query: 338 TVRGAPAPRARTAGIQRIPLPPPPAP 363
+ + P P Q+ PPP P
Sbjct: 486 SGQPPPPPSGPLPPWQQQQQQPPPPP 511
Score = 29.3 bits (64), Expect = 7.5
Identities = 21/79 (26%), Positives = 27/79 (34%), Gaps = 26/79 (32%)
Query: 292 GAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRGAPAPRARTAG 351
GA PPPPP P G + G PPPP + + G
Sbjct: 580 GAPPPPPPPPPG--------------------SAGMMYAPPPPPPPPMDPSNFVTMMGMG 619
Query: 352 IQRI------PLPPPPAPE 364
+ + P PPPP P+
Sbjct: 620 VAGMPPFGMPPAPPPPPPQ 638
Score = 28.9 bits (63), Expect = 9.8
Identities = 34/119 (28%), Positives = 43/119 (36%), Gaps = 23/119 (19%)
Query: 7 PAARMSRSSGRSGSMDPSGAHPSVRQTPSRQPPL----PHRSR-------GGGGGSRGGA 55
PA S+ R + + PS+ T +PP P SR GG GG GG
Sbjct: 335 PATTPLASAPRPAAPANNPPPPSLMSTTQSRPPWMNSGPSESRPYHGMHGGGPGGPGGG- 393
Query: 56 RASPATQPPPLLPPSATGPDA------TVGGPAPTPLLPPSATASVKMEPENKYLPELM 108
P + P PL PS TG GP P + PP + P + P M
Sbjct: 394 ---PHSFPHPL--PSLTGGHGGHPMQHNPNGPPPPWMQPPPPPMNQGPHPPGHHGPPPM 447
>gi|14165439 heterogeneous nuclear ribonucleoprotein K isoform a
[Homo sapiens]
Length = 464
Score = 55.1 bits (131), Expect = 1e-07
Identities = 45/134 (33%), Positives = 55/134 (41%), Gaps = 18/134 (13%)
Query: 282 RGR--GVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTV 339
RGR G P+RGRG PP GR + P R +P RG PPPP
Sbjct: 247 RGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGP----------PPPPPGR 296
Query: 340 RGAPAPRARTAGIQRIPLPPPPAPETYEEYGYDDT-YAEQSYEGYEGYYSQSQGDSEYYD 398
G RAR +PLPPPP P + YD Y+G G+ + DS
Sbjct: 297 GGRGGSRAR-----NLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDT 351
Query: 399 YGHGEVQDSYEAYG 412
+ E Q +YE G
Sbjct: 352 WSPSEWQMAYEPQG 365
Score = 37.4 bits (85), Expect = 0.028
Identities = 22/50 (44%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 16 GRSGSMDPSGAHPSVRQTPSRQPPLPHRSRGGGGGSRGGARASPATQPPP 65
GR G P +P R PP P RGG GGSR AR P PPP
Sbjct: 267 GRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRGGSR--ARNLPLPPPPP 314
Score = 28.9 bits (63), Expect = 9.8
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 270 ELSYLNGVPEPSRGRG--VPVRGRGAAPPPPPVPRG 303
++S G P P GRG R R PPPP PRG
Sbjct: 282 DMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPRG 317
>gi|14165435 heterogeneous nuclear ribonucleoprotein K isoform b
[Homo sapiens]
Length = 463
Score = 55.1 bits (131), Expect = 1e-07
Identities = 45/134 (33%), Positives = 55/134 (41%), Gaps = 18/134 (13%)
Query: 282 RGR--GVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTV 339
RGR G P+RGRG PP GR + P R +P RG PPPP
Sbjct: 247 RGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGP----------PPPPPGR 296
Query: 340 RGAPAPRARTAGIQRIPLPPPPAPETYEEYGYDDT-YAEQSYEGYEGYYSQSQGDSEYYD 398
G RAR +PLPPPP P + YD Y+G G+ + DS
Sbjct: 297 GGRGGSRAR-----NLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDT 351
Query: 399 YGHGEVQDSYEAYG 412
+ E Q +YE G
Sbjct: 352 WSPSEWQMAYEPQG 365
Score = 37.4 bits (85), Expect = 0.028
Identities = 22/50 (44%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 16 GRSGSMDPSGAHPSVRQTPSRQPPLPHRSRGGGGGSRGGARASPATQPPP 65
GR G P +P R PP P RGG GGSR AR P PPP
Sbjct: 267 GRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRGGSR--ARNLPLPPPPP 314
Score = 28.9 bits (63), Expect = 9.8
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 270 ELSYLNGVPEPSRGRG--VPVRGRGAAPPPPPVPRG 303
++S G P P GRG R R PPPP PRG
Sbjct: 282 DMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPRG 317
>gi|14165437 heterogeneous nuclear ribonucleoprotein K isoform a
[Homo sapiens]
Length = 464
Score = 55.1 bits (131), Expect = 1e-07
Identities = 45/134 (33%), Positives = 55/134 (41%), Gaps = 18/134 (13%)
Query: 282 RGR--GVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTV 339
RGR G P+RGRG PP GR + P R +P RG PPPP
Sbjct: 247 RGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGP----------PPPPPGR 296
Query: 340 RGAPAPRARTAGIQRIPLPPPPAPETYEEYGYDDT-YAEQSYEGYEGYYSQSQGDSEYYD 398
G RAR +PLPPPP P + YD Y+G G+ + DS
Sbjct: 297 GGRGGSRAR-----NLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDT 351
Query: 399 YGHGEVQDSYEAYG 412
+ E Q +YE G
Sbjct: 352 WSPSEWQMAYEPQG 365
Score = 37.4 bits (85), Expect = 0.028
Identities = 22/50 (44%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 16 GRSGSMDPSGAHPSVRQTPSRQPPLPHRSRGGGGGSRGGARASPATQPPP 65
GR G P +P R PP P RGG GGSR AR P PPP
Sbjct: 267 GRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRGGSR--ARNLPLPPPPP 314
Score = 28.9 bits (63), Expect = 9.8
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 270 ELSYLNGVPEPSRGRG--VPVRGRGAAPPPPPVPRG 303
++S G P P GRG R R PPPP PRG
Sbjct: 282 DMSPRRGPPPPPPGRGGRGGSRARNLPLPPPPPPRG 317
>gi|55741675 hypothetical protein LOC22889 [Homo sapiens]
Length = 614
Score = 53.1 bits (126), Expect = 5e-07
Identities = 79/310 (25%), Positives = 119/310 (38%), Gaps = 59/310 (19%)
Query: 168 PKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDL 227
P FN K+ GP + ++ +Q ETGAK+ + GKGS + R+ +P Y +++
Sbjct: 244 PTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGS--GCIEPASGREAFEPMYIYISHPK 301
Query: 228 HVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLNGVPE-----PSR 282
+ CE HA E +F V + + + + S ++ VP PS
Sbjct: 302 PEGLAAAKKLCENLLQTVHA--EYSRF-VNQINTAVPLPGYTQPSAISSVPPQPPYYPSN 358
Query: 283 G--RGVPVRGRGAAPPPPPVPRGRGVG---PPRGALVRGTPVRGAITRGA-------TVT 330
G G PV PP PV GV PP +L G V A+ G +T
Sbjct: 359 GYQSGYPV----VPPPQQPVQPPYGVPSIVPPAVSLAPG--VLPALPTGVPPVPTQYPIT 412
Query: 331 RGVPPP---------PTVRGAPAPRARTAGIQRIPLPPPPAPE--TYEEYGYDDTYAEQS 379
+ PP P + AP A AG Q P P PP P ++ + + ++
Sbjct: 413 QVQPPASTGQSPMGGPFIPAAPVKTALPAGPQPQPQPQPPLPSQPQAQKRRFTEELPDER 472
Query: 380 YEGYEGYYSQSQGDSEYYDYGHGEVQDSYEAYGQDDWNGTRPS------------LKAPP 427
G GY G + G G + + + + G++P+ L PP
Sbjct: 473 ESGLLGY---QHGPIHMTNLGTG-----FSSQNEIEGAGSKPASSSGKERERDRQLMPPP 524
Query: 428 ARPVKGAYRE 437
A PV G E
Sbjct: 525 AFPVTGIKTE 534
Score = 30.0 bits (66), Expect = 4.4
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 48 GGGSRGGARASPATQPPPLLPPSATGPDATVGGPAP-TPLLPPSATASVKMEPENKYLPE 106
G G R PA P LPP+A G + T G +P PS K
Sbjct: 10 GAGGRRSKWDQPAPAPLLFLPPAAPGGEVTSSGGSPGGTTAAPSGALDAAAAVAAKINAM 69
Query: 107 LMAEKDSLDPSFTHAMQLLTAEIEKIQKGDSKKD 140
LMA K L P+ +A + L A + + SK D
Sbjct: 70 LMA-KGKLKPT-QNASEKLQAPGKGLTSNKSKDD 101
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 50.1 bits (118), Expect = 4e-06
Identities = 52/176 (29%), Positives = 65/176 (36%), Gaps = 44/176 (25%)
Query: 278 PEPSRGRGVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRG---------AT 328
P P R RG P RG RG G GP R G G T
Sbjct: 96 PPPPRSRGRPRFLRGT--------RGGGGGPRRSPSRGGPDDDGGYTADFDLRPSRAPMP 147
Query: 329 VTRGVPP----PPTVRGAPAPRARTAG-------------------IQRIPLPP---PPA 362
+ RG PP PP R AP+ AR++G +R PLPP P
Sbjct: 148 MKRGPPPRRVGPPPKRAAPSGPARSSGGGMRGRALAVRGRDGYSGPPRREPLPPRRDPYL 207
Query: 363 PETYEEYGYDDTYAEQSYEGYEGYYSQSQGDSEYYDYGHGEVQDSYEAYGQDDWNG 418
E Y D Y+ + Y G ++ S G+ + DYGH V+D G D +G
Sbjct: 208 GPRDEGYSSRDGYSSRDYREPRG-FAPSPGEYTHRDYGHSSVRDDCPLRGYSDRDG 262
Score = 33.1 bits (74), Expect = 0.52
Identities = 43/190 (22%), Positives = 57/190 (30%), Gaps = 51/190 (26%)
Query: 282 RGRGVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRG 341
RGR + VRGR PP R PPR G G +R +R P RG
Sbjct: 178 RGRALAVRGRDGYSGPPR----REPLPPRRDPYLGPRDEGYSSRDGYSSRDYREP---RG 230
Query: 342 APAPRARTAGIQRIPLPPPPAPETYEEYGYDDTYAEQSYEGYEGYYSQSQGDSEYYD--- 398
P P T+ +YG+ + GY D +Y D
Sbjct: 231 ---------------FAPSPGEYTHRDYGHSSVRDDCPLRGYSDRDGYGGRDRDYGDHLS 275
Query: 399 --------------------------YGHGEVQDSYEAYGQDDWNGTRPSLKAPPARPVK 432
YG G + Y Y D ++G R S + R +
Sbjct: 276 RGSHREPFESYGELRGAAPGRGTPPSYGGGGRYEEYRGYSPDAYSGGRDSYSSSYGRSDR 335
Query: 433 GAYREHPYGR 442
+ H GR
Sbjct: 336 YSRGRHRVGR 345
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 49.7 bits (117), Expect = 5e-06
Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 287 PVRGRGAAPPPPPVPRGRGVGPPRGALVRGT--PVRGAITRGATVTRGVPPPPTVRGAPA 344
P+ G PPPPP+P G G+ P +L GT P + A + PP P G P
Sbjct: 635 PLSGDATIPPPPPLPEGVGI-PSPSSLPGGTAIPPPPPLPGSARIPPPPPPLPGSAGIPP 693
Query: 345 PRARTAGIQRIPLPPPPAP 363
P G +P PPPP P
Sbjct: 694 PPPPLPGEAGMPPPPPPLP 712
Score = 40.4 bits (93), Expect = 0.003
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 292 GAAPPPPPVPRGRGVGPPRGALV--RGTPVRGAITRGATVTRGVPPPPTVRGAPAPRART 349
G PPPPP+P G+ PP L G P G G+PPPP G P P
Sbjct: 690 GIPPPPPPLPGEAGMPPPPPPLPGGPGIPPPPPFPGGP----GIPPPPPGMGMPPPPPFG 745
Query: 350 AGIQRIPLPP 359
G+ P+ P
Sbjct: 746 FGVPAAPVLP 755
Score = 38.1 bits (87), Expect = 0.016
Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 278 PEPSRGRGVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGT-PVRGAITRGATVTRGVPPP 336
P P P+ G PP +P G + PP T P + G G+P P
Sbjct: 602 PPPPPPPPPPLPGGVCISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGV----GIPSP 657
Query: 337 PTVRGAPA--PRARTAGIQRIPLPPPPAP 363
++ G A P G RIP PPPP P
Sbjct: 658 SSLPGGTAIPPPPPLPGSARIPPPPPPLP 686
Score = 35.8 bits (81), Expect = 0.080
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 21/69 (30%)
Query: 276 GVPEPSRGRGVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPP 335
G+P P P+ G PPPPP P G G+ PP + G P PP
Sbjct: 703 GMPPPPP----PLPGGPGIPPPPPFPGGPGIPPPPPGM--GMP---------------PP 741
Query: 336 PPTVRGAPA 344
PP G PA
Sbjct: 742 PPFGFGVPA 750
Score = 33.1 bits (74), Expect = 0.52
Identities = 27/91 (29%), Positives = 33/91 (36%), Gaps = 21/91 (23%)
Query: 288 VRGRGAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRG------ 341
V R PP PP+P G ++ P G T PPPP + G
Sbjct: 567 VPSRAPVPPAPPLPGDSGT------IIPPPPAPGDSTTPPPPPPPPPPPPPLPGGVCISS 620
Query: 342 --------APAPRARTAGIQRIPLPPPPAPE 364
A +P +G IP PPPP PE
Sbjct: 621 PPSLPGGTAISPPPPLSGDATIP-PPPPLPE 650
Score = 33.1 bits (74), Expect = 0.52
Identities = 34/108 (31%), Positives = 39/108 (36%), Gaps = 20/108 (18%)
Query: 16 GRSGSMDPSGAHPSVRQTPSRQPPLPHRSRGGGGGS--------RGGARASP-------A 60
G SG++ P P TP PP P GG GG SP A
Sbjct: 581 GDSGTIIPPPPAPGDSTTPPPPPPPPPPPPPLPGGVCISSPPSLPGGTAISPPPPLSGDA 640
Query: 61 TQPPPLLPPSATG---PDATVGGPAPTPLLPPSATASVKMEPENKYLP 105
T PPP P G P + GG A P PP S ++ P LP
Sbjct: 641 TIPPPPPLPEGVGIPSPSSLPGGTAIPP--PPPLPGSARIPPPPPPLP 686
Score = 31.2 bits (69), Expect = 2.0
Identities = 24/70 (34%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 38 PPLPHRSRGGGGGSRGGARASPATQPPPLLPPSA--TGPDATVGGPAPTPLLPPSATASV 95
PP P G G S A PPP LP SA P + G A P PP
Sbjct: 643 PPPPPLPEGVGIPSPSSLPGGTAIPPPPPLPGSARIPPPPPPLPGSAGIPPPPPPLPGEA 702
Query: 96 KMEPENKYLP 105
M P LP
Sbjct: 703 GMPPPPPPLP 712
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 49.7 bits (117), Expect = 5e-06
Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 287 PVRGRGAAPPPPPVPRGRGVGPPRGALVRGT--PVRGAITRGATVTRGVPPPPTVRGAPA 344
P+ G PPPPP+P G G+ P +L GT P + A + PP P G P
Sbjct: 644 PLSGDATIPPPPPLPEGVGI-PSPSSLPGGTAIPPPPPLPGSARIPPPPPPLPGSAGIPP 702
Query: 345 PRARTAGIQRIPLPPPPAP 363
P G +P PPPP P
Sbjct: 703 PPPPLPGEAGMPPPPPPLP 721
Score = 40.4 bits (93), Expect = 0.003
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 292 GAAPPPPPVPRGRGVGPPRGALV--RGTPVRGAITRGATVTRGVPPPPTVRGAPAPRART 349
G PPPPP+P G+ PP L G P G G+PPPP G P P
Sbjct: 699 GIPPPPPPLPGEAGMPPPPPPLPGGPGIPPPPPFPGGP----GIPPPPPGMGMPPPPPFG 754
Query: 350 AGIQRIPLPP 359
G+ P+ P
Sbjct: 755 FGVPAAPVLP 764
Score = 38.1 bits (87), Expect = 0.016
Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 278 PEPSRGRGVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGT-PVRGAITRGATVTRGVPPP 336
P P P+ G PP +P G + PP T P + G G+P P
Sbjct: 611 PPPPPPPPPPLPGGVCISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGV----GIPSP 666
Query: 337 PTVRGAPA--PRARTAGIQRIPLPPPPAP 363
++ G A P G RIP PPPP P
Sbjct: 667 SSLPGGTAIPPPPPLPGSARIPPPPPPLP 695
Score = 35.8 bits (81), Expect = 0.080
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 21/69 (30%)
Query: 276 GVPEPSRGRGVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPP 335
G+P P P+ G PPPPP P G G+ PP + G P PP
Sbjct: 712 GMPPPPP----PLPGGPGIPPPPPFPGGPGIPPPPPGM--GMP---------------PP 750
Query: 336 PPTVRGAPA 344
PP G PA
Sbjct: 751 PPFGFGVPA 759
Score = 33.1 bits (74), Expect = 0.52
Identities = 27/91 (29%), Positives = 33/91 (36%), Gaps = 21/91 (23%)
Query: 288 VRGRGAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRG------ 341
V R PP PP+P G ++ P G T PPPP + G
Sbjct: 576 VPSRAPVPPAPPLPGDSGT------IIPPPPAPGDSTTPPPPPPPPPPPPPLPGGVCISS 629
Query: 342 --------APAPRARTAGIQRIPLPPPPAPE 364
A +P +G IP PPPP PE
Sbjct: 630 PPSLPGGTAISPPPPLSGDATIP-PPPPLPE 659
Score = 33.1 bits (74), Expect = 0.52
Identities = 34/108 (31%), Positives = 39/108 (36%), Gaps = 20/108 (18%)
Query: 16 GRSGSMDPSGAHPSVRQTPSRQPPLPHRSRGGGGGS--------RGGARASP-------A 60
G SG++ P P TP PP P GG GG SP A
Sbjct: 590 GDSGTIIPPPPAPGDSTTPPPPPPPPPPPPPLPGGVCISSPPSLPGGTAISPPPPLSGDA 649
Query: 61 TQPPPLLPPSATG---PDATVGGPAPTPLLPPSATASVKMEPENKYLP 105
T PPP P G P + GG A P PP S ++ P LP
Sbjct: 650 TIPPPPPLPEGVGIPSPSSLPGGTAIPP--PPPLPGSARIPPPPPPLP 695
Score = 31.2 bits (69), Expect = 2.0
Identities = 24/70 (34%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 38 PPLPHRSRGGGGGSRGGARASPATQPPPLLPPSA--TGPDATVGGPAPTPLLPPSATASV 95
PP P G G S A PPP LP SA P + G A P PP
Sbjct: 652 PPPPPLPEGVGIPSPSSLPGGTAIPPPPPLPGSARIPPPPPPLPGSAGIPPPPPPLPGEA 711
Query: 96 KMEPENKYLP 105
M P LP
Sbjct: 712 GMPPPPPPLP 721
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 49.3 bits (116), Expect = 7e-06
Identities = 54/175 (30%), Positives = 67/175 (38%), Gaps = 45/175 (25%)
Query: 289 RGRGAAPPPPPV---PRGRGVGPPRGALVRGTPVRG--------------AITRGAT-VT 330
RGR PPPP PRG G G RG P RG + +RG V
Sbjct: 91 RGRHGPPPPPRSRGPPRGFGAGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVK 150
Query: 331 RGVPP----PPTVRGAPAPRARTAGIQ--RIPLP--------PP---PAPETYEEY---- 369
RG PP P R AP+ R++ R PL PP P P + Y
Sbjct: 151 RGPPPRSGGPSPKRSAPSGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPR 210
Query: 370 --GYD--DTYAEQSYEGYEGY--YSQSQGDSEYYDYGHGEVQDSYEAYGQDDWNG 418
GY D+Y+ + Y Y+ D Y DYGH +D Y + G D +G
Sbjct: 211 DDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDG 265
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 49.3 bits (116), Expect = 7e-06
Identities = 54/175 (30%), Positives = 67/175 (38%), Gaps = 45/175 (25%)
Query: 289 RGRGAAPPPPPV---PRGRGVGPPRGALVRGTPVRG--------------AITRGAT-VT 330
RGR PPPP PRG G G RG P RG + +RG V
Sbjct: 91 RGRHGPPPPPRSRGPPRGFGAGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVK 150
Query: 331 RGVPP----PPTVRGAPAPRARTAGIQ--RIPLP--------PP---PAPETYEEY---- 369
RG PP P R AP+ R++ R PL PP P P + Y
Sbjct: 151 RGPPPRSGGPSPKRSAPSGLVRSSSGMGGRAPLSRGRDSYGGPPRREPLPSRRDVYLSPR 210
Query: 370 --GYD--DTYAEQSYEGYEGY--YSQSQGDSEYYDYGHGEVQDSYEAYGQDDWNG 418
GY D+Y+ + Y Y+ D Y DYGH +D Y + G D +G
Sbjct: 211 DDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYGDRDG 265
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 48.5 bits (114), Expect = 1e-05
Identities = 61/223 (27%), Positives = 76/223 (34%), Gaps = 98/223 (43%)
Query: 297 PPPVPRGRGVGPPRGAL--------VRGTPVRG--------------AITRGAT-VTRGV 333
PPP PR RG PPRG RG P RG + +RG V RG
Sbjct: 96 PPPPPRSRG--PPRGLRGGRGGSGGTRGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGP 153
Query: 334 PP----PPTVRGAPAPRARTAG------------------IQRIPLP------------- 358
PP PP R AP+ R++ +R PLP
Sbjct: 154 PPRSGGPPPKRSAPSGPVRSSSGMGGRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDG 213
Query: 359 ----------------------PPPAPETYEEYGYD---DTYAEQSYEGYEGYYSQSQGD 393
PPP TY +YG+ D Y + Y +GY D
Sbjct: 214 YSTKDSYSSRDYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRGYSDRDGYGR----D 269
Query: 394 SEYYDY-GHGEVQDSYEAYGQDDWNGTRPSLKAPPARPVKGAY 435
+Y D+ G +DSYE+YG S APP R +Y
Sbjct: 270 RDYSDHPSGGSYRDSYESYGN--------SRSAPPTRGPPPSY 304
Score = 32.0 bits (71), Expect = 1.2
Identities = 16/30 (53%), Positives = 17/30 (56%)
Query: 36 RQPPLPHRSRGGGGGSRGGARASPATQPPP 65
R PP P RSRG G RGG S T+ PP
Sbjct: 94 RGPPPPPRSRGPPRGLRGGRGGSGGTRGPP 123
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 48.1 bits (113), Expect = 2e-05
Identities = 43/150 (28%), Positives = 54/150 (36%), Gaps = 12/150 (8%)
Query: 283 GRGVPVRGRGAAPPPPPVPRGRGVGPPRG-ALVRGTPVRGAITRGATVTRGVPPPPTVRG 341
G G P GRGA PPPPP PP G +G P + G PPPP +
Sbjct: 245 GYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPPPDQF 304
Query: 342 AP---APRARTAGIQRIPLPPPPAPETYEEYGYDDTYAEQSYEGYEGYYSQSQGDSEYYD 398
AP P T G + PPPP+ + + Y Y GY G +
Sbjct: 305 APPGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYAGYGQDLSG----FG 360
Query: 399 YGHGEVQDSYEAYGQDDWNGTRPSLKAPPA 428
G + +YG + P PPA
Sbjct: 361 QGFSDPSQQPPSYG----GPSVPGSGGPPA 386
Score = 32.7 bits (73), Expect = 0.68
Identities = 58/280 (20%), Positives = 92/280 (32%), Gaps = 63/280 (22%)
Query: 174 GKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEV 233
G+ + P+ T + +Q E KG D +K ++ GG P +L + +
Sbjct: 77 GRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCG-ETELREYFKK 135
Query: 234 FGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLN------------------ 275
FG E + + + F D+ +Q + + + +
Sbjct: 136 FGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKS 195
Query: 276 ---GVPEPSR--GRGVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVT 330
G P S+ R VP G A PPP + +G GP +G
Sbjct: 196 QAPGQPGASQWGSRVVPNAANGWAGQPPPTWQ-QGYGP-----------QGMWVPAGQAI 243
Query: 331 RGVPPPPTVRGAPAPRARTAGIQRIPLPPPPAPETYEEYGYDDTYAEQSYEGYEGYYSQS 390
G PPP RGA PPPP P T Y + + +G + Q
Sbjct: 244 GGYGPPPAGRGA---------------PPPPPPFT----SYIVSTPPGGFPPPQG-FPQG 283
Query: 391 QGDSEYYDYGHGEVQDSYEAYGQDDWNGTRPSLKAPPARP 430
G + +G+G + + P + PPA P
Sbjct: 284 YGAPPQFSFGYGPPPPPPDQFAP-------PGVPPPPATP 316
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 48.1 bits (113), Expect = 2e-05
Identities = 29/84 (34%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 277 VPEPSRGRGVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPP 336
+P+P P++G PPPPP G G+ PP P G + G+PPP
Sbjct: 896 IPQPP-----PLQGTEMLPPPPPPLPGAGIPPP-----PPLPGAGILPLPPLPGAGIPPP 945
Query: 337 PTVRGAPAPRARTAGIQRIPLPPP 360
P + GA P IPLPPP
Sbjct: 946 PPLPGAAIPPPPPLPGAGIPLPPP 969
Score = 47.8 bits (112), Expect = 2e-05
Identities = 35/91 (38%), Positives = 41/91 (45%), Gaps = 25/91 (27%)
Query: 278 PEPSRGRGVPVRGR--GAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPP 335
P P G G+P+ GA PPPP G G+ PP P+ GA G+PP
Sbjct: 956 PPPLPGAGIPLPPPLPGAGIPPPPPLPGAGIPPP-------PPLPGA---------GIPP 999
Query: 336 PPTVRGA---PAPRARTAGIQRIPLPPPPAP 363
PP + GA P P AGI PPPP P
Sbjct: 1000 PPPLPGAGIPPPPPLPGAGIP----PPPPLP 1026
Score = 47.0 bits (110), Expect = 3e-05
Identities = 35/91 (38%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 278 PEPSRGRGVPVRGR--GAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPP 335
P P G G+P GA PPPP G G+ PP G P + R G+PP
Sbjct: 1099 PPPLPGVGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPR-----VGIPP 1153
Query: 336 PPTVRGA---PAPRARTAGIQRIPLPPPPAP 363
PP + GA P P AGI PPPP P
Sbjct: 1154 PPPLPGAGIPPPPPLPGAGIP----PPPPLP 1180
Score = 46.6 bits (109), Expect = 5e-05
Identities = 35/91 (38%), Positives = 40/91 (43%), Gaps = 25/91 (27%)
Query: 278 PEPSRGRGVPVRGR--GAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPP 335
P P G G+P GA PPPP G G+ PP P+ GA G+PP
Sbjct: 1000 PPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPP-------PPLPGA---------GIPP 1043
Query: 336 PPTVRGA---PAPRARTAGIQRIPLPPPPAP 363
PP + GA P P AGI PPPP P
Sbjct: 1044 PPPLPGAGIPPPPPLPGAGIP----PPPPLP 1070
Score = 45.4 bits (106), Expect = 1e-04
Identities = 35/95 (36%), Positives = 41/95 (43%), Gaps = 22/95 (23%)
Query: 278 PEPSRGRGVPVRGR--GAAPPPPPVPRGRGVGP----PRGALVRGTPVRGAITRGATVTR 331
P P G G+P GA PPPP G G+ P PR + P+ GA
Sbjct: 1110 PPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPRVGIPPPPPLPGA--------- 1160
Query: 332 GVPPPPTVRGA---PAPRARTAGIQRIPLPPPPAP 363
G+PPPP + GA P P GI PPPP P
Sbjct: 1161 GIPPPPPLPGAGIPPPPPLPGVGIP----PPPPLP 1191
Score = 45.1 bits (105), Expect = 1e-04
Identities = 34/91 (37%), Positives = 39/91 (42%), Gaps = 25/91 (27%)
Query: 278 PEPSRGRGVPVRGR--GAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPP 335
P P G G+P GA PPPP G G+ PP P+ GA G+PP
Sbjct: 1044 PPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPP-------PPLPGA---------GIPP 1087
Query: 336 PPTVRGA---PAPRARTAGIQRIPLPPPPAP 363
PP + GA P P GI PPPP P
Sbjct: 1088 PPPLPGAGIPPPPPLPGVGIP----PPPPLP 1114
Score = 44.3 bits (103), Expect = 2e-04
Identities = 30/86 (34%), Positives = 38/86 (44%), Gaps = 20/86 (23%)
Query: 278 PEPSRGRGVPVRGR--GAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPP 335
P P G G+P G PPPP G G+ PP P+ GA G+PP
Sbjct: 1088 PPPLPGAGIPPPPPLPGVGIPPPPPLPGAGIPPP-------PPLPGA---------GIPP 1131
Query: 336 PPTVRGAPAPRARTAGIQRIPLPPPP 361
PP + GA P + R+ +PPPP
Sbjct: 1132 PPPLPGAGIP--PPPPLPRVGIPPPP 1155
Score = 44.3 bits (103), Expect = 2e-04
Identities = 34/96 (35%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 278 PEPSRGRGVP----VRGRGAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGV 333
P P G G+P + G G PPPPP+P G G+ PP G P A T G+
Sbjct: 1176 PPPLPGVGIPPPPPLPGVGI-PPPPPLP-GAGIPPPPPLPGMGIPPAPAPPLPPPGT-GI 1232
Query: 334 PPPPTVRGAPAPRARTAGIQRIPLP------PPPAP 363
PPPP + + P G +P P PPP P
Sbjct: 1233 PPPPLLPVSGPPLLPQVGSSTLPTPQVCGFLPPPLP 1268
Score = 42.0 bits (97), Expect = 0.001
Identities = 32/89 (35%), Positives = 37/89 (41%), Gaps = 22/89 (24%)
Query: 278 PEPSRGRGVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPP 337
P P G VP A P PPP+ + PP P+ GA G+PPPP
Sbjct: 880 PPPLPGMTVPTLPSTAIPQPPPLQGTEMLPPP------PPPLPGA---------GIPPPP 924
Query: 338 TVRGA---PAPRARTAGIQRIPLPPPPAP 363
+ GA P P AGI PPPP P
Sbjct: 925 PLPGAGILPLPPLPGAGIP----PPPPLP 949
Score = 40.8 bits (94), Expect = 0.002
Identities = 31/90 (34%), Positives = 36/90 (40%), Gaps = 26/90 (28%)
Query: 278 PEPSRGRGVPVRGR--GAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPP 335
P P G G+P G PPPP G G+ PP P+ GA G+PP
Sbjct: 1165 PPPLPGAGIPPPPPLPGVGIPPPPPLPGVGIPPP-------PPLPGA---------GIPP 1208
Query: 336 PPTVRGAPAPRARTAGIQRIPLPPPPAPET 365
PP + G GI P PP P P T
Sbjct: 1209 PPPLPG--------MGIPPAPAPPLPPPGT 1230
Score = 34.7 bits (78), Expect = 0.18
Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 278 PEPSRGRGVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGTPVR---GAITRGATVTRGVP 334
P P G G+P AP PP P G G+ PP V G P+ G+ T G
Sbjct: 1209 PPPLPGMGIP-----PAPAPPLPPPGTGIPPPPLLPVSGPPLLPQVGSSTLPTPQVCGFL 1263
Query: 335 PPPTVRG 341
PPP G
Sbjct: 1264 PPPLPSG 1270
Score = 32.0 bits (71), Expect = 1.2
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
Query: 294 APPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRGA-----PAPRAR 348
+PPP P P G + P +T + +P PP ++G P P
Sbjct: 857 SPPPLPCTESSSSMPGLGMVPPPPPPLPGMTVPTLPSTAIPQPPPLQGTEMLPPPPPPLP 916
Query: 349 TAGIQRIPLPPPPAP 363
AGI PPPP P
Sbjct: 917 GAGIP----PPPPLP 927
Score = 28.9 bits (63), Expect = 9.8
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 63 PPPLLPPSATGPDATVGG----PAPTPLLPPSAT 92
PPP LP + P + G PAP P LPP T
Sbjct: 1197 PPPPLPGAGIPPPPPLPGMGIPPAPAPPLPPPGT 1230
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 48.1 bits (113), Expect = 2e-05
Identities = 54/194 (27%), Positives = 74/194 (38%), Gaps = 35/194 (18%)
Query: 261 DDICQEQFLELSYLNGVPEPSRGRG-------VPVRGRGAAPPP--------PPVPRGRG 305
+D+ QE+ L L ++G PE R +G P G+ PPP PP P G+
Sbjct: 21 EDVSQEESLFL--ISGKPEGRRPQGGNQPQRPPPPPGKPQGPPPQGGNQSQGPPPPPGKP 78
Query: 306 VG-PPRGALVR-------GTPVRGAITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPL 357
G PP+G G P R +G ++G PPPP P P+ + P
Sbjct: 79 EGRPPQGGNQSQGPPPHPGKPERPP-PQGGNQSQGTPPPPGKPERPPPQGGNQSHR--PP 135
Query: 358 PPPPAPETYEEYGYDDTYAEQSYEGY-EGYYSQSQGDSEYYDYGHGEVQDSYEAYGQDDW 416
PPP PE G + + + G EG Q S G+ Q G
Sbjct: 136 PPPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQ------GPPQQ 189
Query: 417 NGTRPSLKAPPARP 430
G +P PP +P
Sbjct: 190 EGNKPQGPPPPGKP 203
Score = 36.2 bits (82), Expect = 0.061
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Query: 278 PEPSRGRGVPVRGRGAAPPPPPVPRGRGVGPP-----RGALVRGTPVR--GAITRGATVT 330
P P + P +G + PPP P G+ GPP + R P + G +
Sbjct: 136 PPPGKPERPPPQGGNQSQGPPPHP-GKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKP 194
Query: 331 RGVPPPPTVRGAPA-------PRARTAGIQRIPLPPP 360
+G PPP +G P P+A AG + P PPP
Sbjct: 195 QGPPPPGKPQGPPPAGGNPQQPQAPPAGKPQGPPPPP 231
Score = 29.6 bits (65), Expect = 5.7
Identities = 23/72 (31%), Positives = 26/72 (36%), Gaps = 14/72 (19%)
Query: 23 PSGAHPSVRQTPSRQPPLPHRSRG----GGGGSRGGARASPATQPPPLLPPSATGPDA-- 76
P G P P R PP P + +G GG S+G PPP P P
Sbjct: 36 PEGRRPQGGNQPQRPPPPPGKPQGPPPQGGNQSQG--------PPPPPGKPEGRPPQGGN 87
Query: 77 TVGGPAPTPLLP 88
GP P P P
Sbjct: 88 QSQGPPPHPGKP 99
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 47.0 bits (110), Expect = 3e-05
Identities = 31/87 (35%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 278 PEPSRG-RGVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPP 336
P P R RG P AAPPP P P PP + P R A T P
Sbjct: 109 PAPPRAPRGAPAAAAAAAPPPTPAPP-----PPPAPVAAAAPARAPRAAAAAATAPPSPG 163
Query: 337 PTVRGAPAPRARTAGIQRIPLPPPPAP 363
P P PRA+ A P P P AP
Sbjct: 164 PA---QPGPRAQRAAPLAAPPPAPAAP 187
Score = 40.4 bits (93), Expect = 0.003
Identities = 33/101 (32%), Positives = 36/101 (35%), Gaps = 13/101 (12%)
Query: 263 ICQEQFLELSYLNGVPEPSRGRGVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGTPVRGA 322
I Q L +SY + + R P R RGA PP PP PRGA P A
Sbjct: 77 IQQRAVLRVSYKGSISYRNAARVQPPR-RGATPPAPP-------RAPRGA-----PAAAA 123
Query: 323 ITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPPPAP 363
PPP V A RA A PP P P
Sbjct: 124 AAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGP 164
Score = 31.6 bits (70), Expect = 1.5
Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
Query: 34 PSRQPPLPHRSRGGGGGSRGGARASPATQPPPLLPPSATGP----DATVGGPAPTPLLPP 89
P+ PP P +R A+ A PP P+ GP A + P P P PP
Sbjct: 129 PTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPP 188
Query: 90 SATASVKMEPENKYLPELMAEKDSLDP 116
+ P P + A + L P
Sbjct: 189 AVAPPA--GPRRAPPPAVAAREPPLPP 213
Score = 29.3 bits (64), Expect = 7.5
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 32 QTPSR--QPPLPHRSRGGGGGSRGGARASPA-TQPPPLLPPSATGPDATVGGPAPTPLLP 88
Q P R PP P R+ G + A P PPP P +A P A P
Sbjct: 100 QPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAP 159
Query: 89 PS 90
PS
Sbjct: 160 PS 161
Score = 28.9 bits (63), Expect = 9.8
Identities = 26/94 (27%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 9 ARMSRSSGRSGSMDPSG--AHPSVRQ-------TPSRQPPLPHRSRGGGGGSRGGARASP 59
AR R++ + + PS A P R P P P G R A
Sbjct: 146 ARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVA 205
Query: 60 ATQPPPLLPPSATGPDATVGGPAPTPLLPPSATA 93
A +PP PP P P P P PP A
Sbjct: 206 AREPPLPPPPQPPAPPQQQQPPPPQPQPPPEGGA 239
>gi|6382071 diaphanous 2 isoform 12C [Homo sapiens]
Length = 1096
Score = 46.6 bits (109), Expect = 5e-05
Identities = 50/168 (29%), Positives = 67/168 (39%), Gaps = 30/168 (17%)
Query: 205 DKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDIC 264
+KAK EE + K A + F E F EA A + E++K+ L ++
Sbjct: 486 NKAKVEE----SEQKAAEFSKK---FDEEFTARQEAQAELQKRDEKIKE-LEAEIQQLRT 537
Query: 265 QEQFLELSYLNGVPEPSRGRGVPVRGRGAAPPPPPVPRGRGVGPPRGAL--VRGTPVRGA 322
Q Q L S +G+P P +P G PP PP+P G + PP L + G P
Sbjct: 538 QAQVLSSS--SGIPGPPAAPPLPGVGPPPPPPAPPLPGGAPLPPPPPPLPGMMGIP---- 591
Query: 323 ITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPPPAPETYEEYG 370
PPPP + G P P G+ PPPP YG
Sbjct: 592 ---------PPPPPPLLFGGPPPPPPLGGV-----PPPPGISLNLPYG 625
Score = 28.9 bits (63), Expect = 9.8
Identities = 30/104 (28%), Positives = 37/104 (35%), Gaps = 13/104 (12%)
Query: 15 SGRSGSMDPSGAHPSVRQTPSRQPPLPHRSRGGG----GGSRGGARASPATQPPPLL--- 67
S SG P A P P PP P G G P PPPLL
Sbjct: 543 SSSSGIPGPPAAPPLPGVGPPPPPPAPPLPGGAPLPPPPPPLPGMMGIPPPPPPPLLFGG 602
Query: 68 PPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEK 111
PP P +GG P P + S M+ + Y PE+ ++
Sbjct: 603 PP----PPPPLGGVPPPPGI--SLNLPYGMKQKKMYKPEVSMKR 640
>gi|5803003 diaphanous 2 isoform 156 [Homo sapiens]
Length = 1101
Score = 46.6 bits (109), Expect = 5e-05
Identities = 50/168 (29%), Positives = 67/168 (39%), Gaps = 30/168 (17%)
Query: 205 DKAKEEELRKGGDPKYAHLNMDLHVFIEVFGPPCEAYALMAHAMEEVKKFLVPDMMDDIC 264
+KAK EE + K A + F E F EA A + E++K+ L ++
Sbjct: 486 NKAKVEE----SEQKAAEFSKK---FDEEFTARQEAQAELQKRDEKIKE-LEAEIQQLRT 537
Query: 265 QEQFLELSYLNGVPEPSRGRGVPVRGRGAAPPPPPVPRGRGVGPPRGAL--VRGTPVRGA 322
Q Q L S +G+P P +P G PP PP+P G + PP L + G P
Sbjct: 538 QAQVLSSS--SGIPGPPAAPPLPGVGPPPPPPAPPLPGGAPLPPPPPPLPGMMGIP---- 591
Query: 323 ITRGATVTRGVPPPPTVRGAPAPRARTAGIQRIPLPPPPAPETYEEYG 370
PPPP + G P P G+ PPPP YG
Sbjct: 592 ---------PPPPPPLLFGGPPPPPPLGGV-----PPPPGISLNLPYG 625
Score = 28.9 bits (63), Expect = 9.8
Identities = 30/104 (28%), Positives = 37/104 (35%), Gaps = 13/104 (12%)
Query: 15 SGRSGSMDPSGAHPSVRQTPSRQPPLPHRSRGGG----GGSRGGARASPATQPPPLL--- 67
S SG P A P P PP P G G P PPPLL
Sbjct: 543 SSSSGIPGPPAAPPLPGVGPPPPPPAPPLPGGAPLPPPPPPLPGMMGIPPPPPPPLLFGG 602
Query: 68 PPSATGPDATVGGPAPTPLLPPSATASVKMEPENKYLPELMAEK 111
PP P +GG P P + S M+ + Y PE+ ++
Sbjct: 603 PP----PPPPLGGVPPPPGI--SLNLPYGMKQKKMYKPEVSMKR 640
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 46.2 bits (108), Expect = 6e-05
Identities = 29/81 (35%), Positives = 31/81 (38%), Gaps = 18/81 (22%)
Query: 287 PVRGRGAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGVPPPPTVRG-APAP 345
P RG PPPPP P G PP P RG RG PPPP R AP
Sbjct: 280 PPPSRGGPPPPPPPPHNSGPPPP--------PARG---------RGAPPPPPSRAPTAAP 322
Query: 346 RARTAGIQRIPLPPPPAPETY 366
+ +PPPP Y
Sbjct: 323 PPPPPSRPSVAVPPPPPNRMY 343
Score = 45.4 bits (106), Expect = 1e-04
Identities = 32/96 (33%), Positives = 35/96 (36%), Gaps = 27/96 (28%)
Query: 278 PEPSRGRGVPV----RGRGAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTRGV 333
P P+RGRG P R AAPPPPP R PP R
Sbjct: 301 PPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAVPP-----------------PPPNRMY 343
Query: 334 PPPPTV------RGAPAPRARTAGIQRIPLPPPPAP 363
PPPP G P P G+ + PPPP P
Sbjct: 344 PPPPPALPSSAPSGPPPPPPSVLGVGPVAPPPPPPP 379
Score = 41.6 bits (96), Expect = 0.001
Identities = 31/88 (35%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 278 PEPSRGRGVPVRG--RGAAPPPPPVPRGRGVGPPRGALV-RGTPVRGAITRGATVTRGVP 334
P PSRG P + PPPPP RGRG PP + P +R + P
Sbjct: 280 PPPSRGGPPPPPPPPHNSGPPPPPA-RGRGAPPPPPSRAPTAAPPPPPPSRPSVAVP--P 336
Query: 335 PPPTVRGAPAPRARTAGIQRIPLPPPPA 362
PPP P P A + P PPPP+
Sbjct: 337 PPPNRMYPPPPPALPSSAPSGPPPPPPS 364
Score = 37.0 bits (84), Expect = 0.036
Identities = 28/79 (35%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 28 PSVRQTPSRQPPLPHRS-------RGGGGGSRGGARASPATQPPPLLPPSATGPDATVGG 80
P R P PP PH S RG G +RA A PPP PPS P V
Sbjct: 281 PPSRGGPPPPPPPPHNSGPPPPPARGRGAPPPPPSRAPTAAPPPP--PPSR--PSVAVPP 336
Query: 81 PAPTPLLPPSATASVKMEP 99
P P + PP A P
Sbjct: 337 PPPNRMYPPPPPALPSSAP 355
Score = 29.3 bits (64), Expect = 7.5
Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 24 SGAHPSVRQTPSRQPPLPHRSRGGGGGSRGGARASPATQPPP----LLPPSATGPDATVG 79
SG P + PP P R+ +R S A PPP PP P +
Sbjct: 297 SGPPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAVPPPPPNRMYPPPPPALPSSAPS 356
Query: 80 GPAPTP 85
GP P P
Sbjct: 357 GPPPPP 362
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 45.1 bits (105), Expect = 1e-04
Identities = 31/84 (36%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 283 GRGVPVRGRGAAPPPPPVPRGRGVGPPRG-ALVRGTPVRGAITRGATVTRGVPPPPTVRG 341
G G P GRGA PPPPP PP G +G P + G PPPP +
Sbjct: 245 GYGPPPAGRGAPPPPPPFTSYIVSTPPGGFPPPQGFPQGYGAPPQFSFGYGPPPPPPDQF 304
Query: 342 AP---APRARTAGIQRIPLPPPPA 362
AP P T G + PPPP+
Sbjct: 305 APPGVPPPPATPGAAPLAFPPPPS 328
Score = 32.7 bits (73), Expect = 0.68
Identities = 58/280 (20%), Positives = 92/280 (32%), Gaps = 63/280 (22%)
Query: 174 GKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFIEV 233
G+ + P+ T + +Q E KG D +K ++ GG P +L + +
Sbjct: 77 GRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCG-ETELREYFKK 135
Query: 234 FGPPCEAYALMAHAMEEVKKFLVPDMMDDICQEQFLELSYLN------------------ 275
FG E + + + F D+ +Q + + + +
Sbjct: 136 FGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKS 195
Query: 276 ---GVPEPSR--GRGVPVRGRGAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVT 330
G P S+ R VP G A PPP + +G GP +G
Sbjct: 196 QAPGQPGASQWGSRVVPNAANGWAGQPPPTWQ-QGYGP-----------QGMWVPAGQAI 243
Query: 331 RGVPPPPTVRGAPAPRARTAGIQRIPLPPPPAPETYEEYGYDDTYAEQSYEGYEGYYSQS 390
G PPP RGA PPPP P T Y + + +G + Q
Sbjct: 244 GGYGPPPAGRGA---------------PPPPPPFT----SYIVSTPPGGFPPPQG-FPQG 283
Query: 391 QGDSEYYDYGHGEVQDSYEAYGQDDWNGTRPSLKAPPARP 430
G + +G+G + + P + PPA P
Sbjct: 284 YGAPPQFSFGYGPPPPPPDQFAP-------PGVPPPPATP 316
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 44.7 bits (104), Expect = 2e-04
Identities = 32/86 (37%), Positives = 35/86 (40%), Gaps = 19/86 (22%)
Query: 278 PEPSRGRGVPVRGRGAAPPPPPVPRGR-GVGPPRGALVRGTPVRGAITRGATVTRGVPPP 336
P P RG P GRG PPPPP GR G PP G P +PPP
Sbjct: 351 PPPPTPRGPPPPGRGGPPPPPPPATGRSGPLPPPPPGAGGPP--------------MPPP 396
Query: 337 PTVRGAPAPRARTAGIQRIPLPPPPA 362
P P P ++G P P PPA
Sbjct: 397 P----PPPPPPPSSGNGPAPPPLPPA 418
Score = 43.9 bits (102), Expect = 3e-04
Identities = 38/97 (39%), Positives = 42/97 (43%), Gaps = 23/97 (23%)
Query: 278 PEPSRGRGV----PVRG--RGAAPPPPPVPRGRGVGPPRGALVRGTPVRGAITRGATVTR 331
P PSRG P+ G +G + P PPVP G PP RG P G R
Sbjct: 317 PPPSRGGNQLPRPPIVGGNKGRSGPLPPVPLGIAPPPPTP---RGPPPPG---------R 364
Query: 332 GVPPPP----TVRGAPAPRART-AGIQRIPLPPPPAP 363
G PPPP T R P P AG +P PPPP P
Sbjct: 365 GGPPPPPPPATGRSGPLPPPPPGAGGPPMPPPPPPPP 401
Score = 42.4 bits (98), Expect = 9e-04
Identities = 32/82 (39%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 288 VRGRGAAPPPPPVPRGRGVGPPRGALVRGT--------PVRGAITRGATVTRGVPPPPTV 339
+R + PPPPP RG G PR +V G PV I RG PPP
Sbjct: 307 MRRQEPLPPPPPPSRG-GNQLPRPPIVGGNKGRSGPLPPVPLGIAPPPPTPRG--PPPPG 363
Query: 340 RGAPAPRARTAGIQRIPLPPPP 361
RG P P A + PLPPPP
Sbjct: 364 RGGPPPPPPPATGRSGPLPPPP 385
Score = 37.0 bits (84), Expect = 0.036
Identities = 36/144 (25%), Positives = 46/144 (31%), Gaps = 27/144 (18%)
Query: 23 PSGAHPSVRQTPSRQPPLPHRSRGGGGGSRGGARASPATQPPPLLPPSATGPDATVGGPA 82
P G P R P PP G GA P PPP PP P ++ GPA
Sbjct: 356 PRGPPPPGRGGPPPPPPPATGRSGPLPPPPPGAGGPPMPPPPPPPPP----PPSSGNGPA 411
Query: 83 PTPLLPPSATA-----------------------SVKMEPENKYLPELMAEKDSLDPSFT 119
P PL P A PE+ L + L +
Sbjct: 412 PPPLPPALVPAGGLAPGGGRGALLDQIRQGIQLNKTPGAPESSALQPPPQSSEGLVGALM 471
Query: 120 HAMQLLTAEIEKIQKGDSKKDDEE 143
H MQ + I +G+ + DE+
Sbjct: 472 HVMQKRSRAIHSSDEGEDQAGDED 495
Score = 32.7 bits (73), Expect = 0.68
Identities = 26/81 (32%), Positives = 30/81 (37%), Gaps = 21/81 (25%)
Query: 277 VPEPSRGRGVPVRGRGAAPPPPPVPRGRGVGP--------PRGALVRGTPVRGAI----- 323
+P P G G P PPPPP G G P P G L G RGA+
Sbjct: 381 LPPPPPGAGGPPMPPPPPPPPPPPSSGNGPAPPPLPPALVPAGGLAPGGG-RGALLDQIR 439
Query: 324 -------TRGATVTRGVPPPP 337
T GA + + PPP
Sbjct: 440 QGIQLNKTPGAPESSALQPPP 460
Score = 31.2 bits (69), Expect = 2.0
Identities = 30/95 (31%), Positives = 36/95 (37%), Gaps = 24/95 (25%)
Query: 21 MDPSGAHPSVRQTPSRQ---PPLPHRSRGGG--------GGSRGGARASPATQ-----PP 64
++ G +VRQ RQ PP P SRGG GG++G + P PP
Sbjct: 294 IEDQGGLEAVRQEMRRQEPLPPPPPPSRGGNQLPRPPIVGGNKGRSGPLPPVPLGIAPPP 353
Query: 65 PLL---PPSATG-----PDATVGGPAPTPLLPPSA 91
P PP G P G P P PP A
Sbjct: 354 PTPRGPPPPGRGGPPPPPPPATGRSGPLPPPPPGA 388
>gi|147902746 MEX3A protein [Homo sapiens]
Length = 520
Score = 44.7 bits (104), Expect = 2e-04
Identities = 48/207 (23%), Positives = 77/207 (37%), Gaps = 49/207 (23%)
Query: 37 QPPLPHRSRGGGGGSRGGARASPATQPPPLLPPS-ATGPDATVGGPA---PTPLLPPSAT 92
+PP P GGGG GGA A PA P P PP A P A PA P P P
Sbjct: 52 EPPAPTAGEDGGGGG-GGAPAQPAAPPQPAPPPPPAAPPAAPTAAPAAQTPQPPTAPKGA 110
Query: 93 ASVKM-----EPENKYLPELMAEKDSLDPSFTHAMQLLTAEIEKIQKGDSK--------- 138
+ K+ E E + + P+ H +++ + KI+ +K
Sbjct: 111 SDAKLCALYKEAELRLKGSSNTTECVPVPTSEHVAEIVGRQGCKIKALRAKTNTYIKTPV 170
Query: 139 KDDEENYLDLFSHKNMKLKERVLIPVKQY------------------------------P 168
+ +E ++ +++ R +I ++
Sbjct: 171 RGEEPVFMVTGRREDVATARREIISAAEHFSMIRASRNKSGAAFGVAPALPGQVTIRVRV 230
Query: 169 KFNFVGKILGPQGNTIKRLQEETGAKI 195
+ VG ++GP+G TIKR+Q++T I
Sbjct: 231 PYRVVGLVVGPKGATIKRIQQQTNTYI 257
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,473,281
Number of Sequences: 37866
Number of extensions: 1733295
Number of successful extensions: 20747
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 1190
Number of HSP's that attempted gapping in prelim test: 12335
Number of HSP's gapped (non-prelim): 7889
length of query: 443
length of database: 18,247,518
effective HSP length: 105
effective length of query: 338
effective length of database: 14,271,588
effective search space: 4823796744
effective search space used: 4823796744
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.