Guide to the Human Genome
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Name: QKI Sequence: fasta or formatted (319aa) NCBI GI: 45827708
Description:

quaking homolog, KH domain RNA binding isoform HQK-6

Referenced in:

Oligodendrocytes and Myelin
Capping and Splicing

Other entries for this name:
alt prot [341aa] quaking homolog, KH domain RNA binding isoform HQK-5
alt prot [325aa] quaking homolog, KH domain RNA binding isoform HQK-7
alt prot [319aa] quaking homolog, KH domain RNA binding isoform HQK-7B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         29           2
 C cysteine            0.6          2           1
 D aspartate           3.8         12           1
 E glutamate           8.5         27           2
 F phenylalanine       1.9          6           1
 G glycine             6.6         21           1
 H histidine           1.3          4           1
 I isoleucine          5.6         18           2
 K lysine              7.5         24           3
 L leucine            10.3         33           2
 M methionine          4.1         13           1
 N asparagine          4.1         13           1
 P proline            10.3         33           2
 Q glutamine           3.1         10           1
 R arginine            4.7         15           1
 S serine              3.4         11           2
 T threonine           6.3         20           1
 V valine              5.3         17           1
 W tryptophan          0.3          1           1
 Y tyrosine            3.1         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   quaking homolog, KH domain RNA binding isoform HQK-6... 
QKI                   0.979   quaking homolog, KH domain RNA binding isoform HQK-7...
QKI                   0.976   quaking homolog, KH domain RNA binding isoform HQK-5...
QKI                   0.972   quaking homolog, KH domain RNA binding isoform HQK-7...
KHDRBS2               0.189   KH domain-containing, RNA-binding, signal transduct...
KHDRBS3               0.182   KH domain containing, RNA binding, signal transductio...
KHDRBS1               0.177   KH domain containing, RNA binding, signal transductio...
SF1                   0.122   splicing factor 1 isoform 3 
SF1                   0.122   splicing factor 1 isoform 2 
SF1                   0.122   splicing factor 1 isoform 1 
KIAA0907              0.031   hypothetical protein LOC22889 
MAPK7                 0.024   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.024   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.024   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.024   mitogen-activated protein kinase 7 isoform 2 
GLTSCR1               0.023   glioma tumor suppressor candidate region gene 1 [Ho...
NFIB                  0.023   nuclear factor I/B 
SFPQ                  0.021   splicing factor proline/glutamine rich (polypyrimidin...
TCERG1                0.021   transcription elongation regulator 1 isoform 2 [Homo...
TCERG1                0.021   transcription elongation regulator 1 isoform 1 [Homo...
RIN3                  0.020   Ras and Rab interactor 3 
BPTF                  0.020   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.020   bromodomain PHD finger transcription factor isoform ...
NUMBL                 0.020   numb homolog (Drosophila)-like 
NACA                  0.020   nascent polypeptide-associated complex alpha subuni...
AMOT                  0.018   angiomotin isoform 2 
AMOT                  0.018   angiomotin isoform 1 
BCORL1                0.018   BCL6 co-repressor-like 1 
FMN2                  0.016   formin 2 
IRX5                  0.016   iroquois homeobox protein 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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