Guide to the Human Genome
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Name: KHDRBS2 Sequence: fasta or formatted (349aa) NCBI GI: 189217895
Description:

KH domain-containing, RNA-binding, signal transduction-associated protein 2

Referenced in:

Capping and Splicing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         26           1
 C cysteine            0.0          0           0
 D aspartate           5.2         18           2
 E glutamate          10.6         37           3
 F phenylalanine       1.7          6           1
 G glycine            10.0         35           2
 H histidine           2.0          7           1
 I isoleucine          3.4         12           1
 K lysine              6.3         22           2
 L leucine             7.2         25           2
 M methionine          1.4          5           1
 N asparagine          2.0          7           1
 P proline             9.5         33           6
 Q glutamine           2.6          9           1
 R arginine            8.0         28           1
 S serine              7.2         25           2
 T threonine           3.7         13           2
 V valine              4.6         16           1
 W tryptophan          0.3          1           1
 Y tyrosine            6.9         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   KH domain-containing, RNA-binding, signal transduct... 
KHDRBS3               0.609   KH domain containing, RNA binding, signal transductio...
KHDRBS1               0.585   KH domain containing, RNA binding, signal transductio...
QKI                   0.168   quaking homolog, KH domain RNA binding isoform HQK-7...
QKI                   0.168   quaking homolog, KH domain RNA binding isoform HQK-7...
QKI                   0.168   quaking homolog, KH domain RNA binding isoform HQK-6...
QKI                   0.168   quaking homolog, KH domain RNA binding isoform HQK-5...
SF1                   0.081   splicing factor 1 isoform 3 
SF1                   0.081   splicing factor 1 isoform 2 
SF1                   0.081   splicing factor 1 isoform 1 
WASL                  0.033   Wiskott-Aldrich syndrome gene-like protein 
WIPF1                 0.032   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.032   WAS/WASL interacting protein family, member 1 
RBMX                  0.032   RNA binding motif protein, X-linked 
FMN2                  0.029   formin 2 
NACA                  0.029   nascent polypeptide-associated complex alpha subuni...
DIAPH2                0.027   diaphanous 2 isoform 12C 
DIAPH2                0.027   diaphanous 2 isoform 156 
SNRPB                 0.027   small nuclear ribonucleoprotein polypeptide B/B' iso...
WAS                   0.027   Wiskott-Aldrich syndrome protein 
CEL                   0.026   carboxyl ester lipase precursor 
ZCCHC2                0.026   zinc finger, CCHC domain containing 2 
DIAPH1                0.025   diaphanous 1 isoform 2 
DIAPH1                0.025   diaphanous 1 isoform 1 
FMN1                  0.025   formin 1 
FIGNL2                0.025   fidgetin-like 2 
FUBP3                 0.025   far upstream element (FUSE) binding protein 3 [Homo...
SRRM1                 0.025   serine/arginine repetitive matrix 1 
TAF4                  0.025   TBP-associated factor 4 
FMNL1                 0.025   formin-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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