Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: QKI Sequence: fasta or formatted (341aa) NCBI GI: 45827706
Description:

quaking homolog, KH domain RNA binding isoform HQK-5

Referenced in:

Oligodendrocytes and Myelin
Capping and Splicing

Other entries for this name:
alt prot [319aa] quaking homolog, KH domain RNA binding isoform HQK-6
alt prot [325aa] quaking homolog, KH domain RNA binding isoform HQK-7
alt prot [319aa] quaking homolog, KH domain RNA binding isoform HQK-7B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         33           2
 C cysteine            0.6          2           1
 D aspartate           4.1         14           1
 E glutamate           7.9         27           2
 F phenylalanine       1.5          5           1
 G glycine             6.2         21           1
 H histidine           1.8          6           1
 I isoleucine          5.6         19           2
 K lysine              7.0         24           3
 L leucine             9.7         33           2
 M methionine          3.8         13           1
 N asparagine          4.1         14           1
 P proline             9.7         33           2
 Q glutamine           3.2         11           1
 R arginine            5.9         20           2
 S serine              3.2         11           2
 T threonine           6.5         22           1
 V valine              6.2         21           1
 W tryptophan          0.3          1           1
 Y tyrosine            3.2         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   quaking homolog, KH domain RNA binding isoform HQK-5... 
QKI                   0.912   quaking homolog, KH domain RNA binding isoform HQK-7...
QKI                   0.912   quaking homolog, KH domain RNA binding isoform HQK-6...
QKI                   0.909   quaking homolog, KH domain RNA binding isoform HQK-7...
KHDRBS2               0.176   KH domain-containing, RNA-binding, signal transduct...
KHDRBS3               0.170   KH domain containing, RNA binding, signal transductio...
KHDRBS1               0.166   KH domain containing, RNA binding, signal transductio...
SF1                   0.114   splicing factor 1 isoform 3 
SF1                   0.114   splicing factor 1 isoform 2 
SF1                   0.114   splicing factor 1 isoform 1 
KIAA0907              0.029   hypothetical protein LOC22889 
GLTSCR1               0.021   glioma tumor suppressor candidate region gene 1 [Ho...
NFIB                  0.021   nuclear factor I/B 
MAPK7                 0.021   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.021   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.021   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.021   mitogen-activated protein kinase 7 isoform 2 
SFPQ                  0.020   splicing factor proline/glutamine rich (polypyrimidin...
TCERG1                0.020   transcription elongation regulator 1 isoform 2 [Homo...
TCERG1                0.020   transcription elongation regulator 1 isoform 1 [Homo...
RIN3                  0.018   Ras and Rab interactor 3 
BPTF                  0.018   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.018   bromodomain PHD finger transcription factor isoform ...
NACA                  0.018   nascent polypeptide-associated complex alpha subuni...
AMOT                  0.017   angiomotin isoform 2 
AMOT                  0.017   angiomotin isoform 1 
NUMBL                 0.017   numb homolog (Drosophila)-like 
BCORL1                0.017   BCL6 co-repressor-like 1 
FMN2                  0.015   formin 2 
IRX5                  0.015   iroquois homeobox protein 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press