Guide to the Human Genome
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Name: HNRNPK Sequence: fasta or formatted (464aa) NCBI GI: 14165437
Description:

heterogeneous nuclear ribonucleoprotein K isoform a

Referenced in:

hnRNP

Other entries for this name:
alt prot [463aa] heterogeneous nuclear ribonucleoprotein K isoform b
alt mRNA [464aa] heterogeneous nuclear ribonucleoprotein K isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7         22           1
 C cysteine            1.1          5           2
 D aspartate           7.3         34           2
 E glutamate           7.3         34           3
 F phenylalanine       2.6         12           1
 G glycine            12.1         56           2
 H histidine           0.9          4           1
 I isoleucine          7.5         35           2
 K lysine              4.5         21           2
 L leucine             6.2         29           2
 M methionine          2.6         12           2
 N asparagine          2.6         12           1
 P proline             8.8         41           6
 Q glutamine           4.5         21           1
 R arginine            7.8         36           2
 S serine              6.7         31           2
 T threonine           5.2         24           2
 V valine              3.2         15           2
 W tryptophan          0.6          3           1
 Y tyrosine            3.7         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heterogeneous nuclear ribonucleoprotein K isoform a ... 
HNRNPK                1.000   heterogeneous nuclear ribonucleoprotein K isoform a ...
HNRNPK                0.987   heterogeneous nuclear ribonucleoprotein K isoform b ...
PCBP2                 0.139   poly(rC) binding protein 2 isoform e 
PCBP2                 0.139   poly(rC) binding protein 2 isoform d 
PCBP2                 0.139   poly(rC) binding protein 2 isoform b 
PCBP2                 0.139   poly(rC) binding protein 2 isoform a 
PCBP1                 0.122   poly(rC) binding protein 1 
PCBP2                 0.087   poly(rC) binding protein 2 isoform g 
PCBP2                 0.087   poly(rC) binding protein 2 isoform f 
PCBP2                 0.087   poly(rC) binding protein 2 isoform c 
PCBP3                 0.087   poly(rC) binding protein 3 isoform 1 
PCBP4                 0.081   poly(rC) binding protein 4 isoform c 
PCBP4                 0.081   poly(rC) binding protein 4 isoform c 
PCBP3                 0.074   poly(rC) binding protein 3 isoform 2 
NOVA1                 0.048   neuro-oncological ventral antigen 1 isoform 2 
NOVA2                 0.048   neuro-oncological ventral antigen 2 
KHSRP                 0.048   KH-type splicing regulatory protein 
FUBP1                 0.045   far upstream element-binding protein 
NOVA1                 0.042   neuro-oncological ventral antigen 1 isoform 1 
FUBP3                 0.041   far upstream element (FUSE) binding protein 3 [Homo...
IGF2BP1               0.037   insulin-like growth factor 2 mRNA binding protein 1...
PCBP4                 0.037   poly(rC) binding protein 4 isoform a 
IGF2BP1               0.035   insulin-like growth factor 2 mRNA binding protein 1 ...
IGF2BP3               0.033   insulin-like growth factor 2 mRNA binding protein 3 ...
KHDRBS1               0.032   KH domain containing, RNA binding, signal transductio...
IGF2BP2               0.031   insulin-like growth factor 2 mRNA binding protein 2 ...
PPP1R10               0.031   protein phosphatase 1, regulatory subunit 10 
HNRNPR                0.029   heterogeneous nuclear ribonucleoprotein R isoform 3...
HNRNPR                0.029   heterogeneous nuclear ribonucleoprotein R isoform 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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