Search of human proteins with 5730023

Search of human proteins with 5730023

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5730023 RuvB-like 2 [Homo sapiens]
         (463 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5730023 RuvB-like 2 [Homo sapiens]                                 890   0.0  
gi|4506753 RuvB-like 1 [Homo sapiens]                                 375   e-104
gi|45643125 nuclear VCP-like isoform 2 [Homo sapiens]                  39   0.008
gi|45643123 nuclear VCP-like isoform 1 [Homo sapiens]                  39   0.008
gi|157671927 spermatogenesis associated 5 [Homo sapiens]               37   0.029
gi|21327685 YME1-like 1 isoform 1 [Homo sapiens]                       37   0.049
gi|7657689 YME1-like 1 isoform 3 [Homo sapiens]                        37   0.049
gi|28882049 replication factor C 2 isoform 2 [Homo sapiens]            35   0.11 
gi|6005942 valosin-containing protein [Homo sapiens]                   34   0.25 
gi|42476028 ATPase family, AAA domain containing 3A [Homo sapiens]     34   0.32 
gi|194018490 ATPase family, AAA domain containing 3C [Homo sapiens]    34   0.32 
gi|226371754 katanin p60 subunit A-like 2 [Homo sapiens]               33   0.42 
gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens]      33   0.42 
gi|24497435 proteasome 26S ATPase subunit 5 [Homo sapiens]             32   0.93 
gi|17865802 vacuolar protein sorting factor 4B [Homo sapiens]          32   0.93 
gi|7019569 vacuolar protein sorting factor 4A [Homo sapiens]           32   0.93 
gi|62177112 katanin p60 subunit A-like 1 [Homo sapiens]                32   0.93 
gi|14149767 katanin p60 subunit A-like 1 [Homo sapiens]                32   0.93 
gi|75677353 AAA-ATPase  TOB3 [Homo sapiens]                            32   1.2  
gi|5802970 AFG3 ATPase family gene 3-like 2 [Homo sapiens]             32   1.6  
gi|24415404 MDN1, midasin homolog [Homo sapiens]                       32   1.6  
gi|31563534 replication factor C 2 isoform 1 [Homo sapiens]            31   2.1  
gi|222537754 hypothetical protein LOC375337 [Homo sapiens]             31   2.7  
gi|18375650 protein tyrosine phosphatase, non-receptor type 13 i...    31   2.7  
gi|18375648 protein tyrosine phosphatase, non-receptor type 13 i...    31   2.7  
gi|18375646 protein tyrosine phosphatase, non-receptor type 13 i...    31   2.7  
gi|5453992 protein tyrosine phosphatase, non-receptor type 13 is...    31   2.7  
gi|195539395 proteasome 26S ATPase subunit 6 [Homo sapiens]            31   2.7  
gi|11321607 thyroid hormone receptor interactor 13 [Homo sapiens]      31   2.7  
gi|40806170 spastin isoform 2 [Homo sapiens]                           30   3.5  

>gi|5730023 RuvB-like 2 [Homo sapiens]
          Length = 463

 Score =  890 bits (2300), Expect = 0.0
 Identities = 463/463 (100%), Positives = 463/463 (100%)

Query: 1   MATVTATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVL 60
           MATVTATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVL
Sbjct: 1   MATVTATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVL 60

Query: 61  EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT 120
           EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT
Sbjct: 61  EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT 120

Query: 121 QAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIE 180
           QAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIE
Sbjct: 121 QAFRRSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIE 180

Query: 181 SLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVH 240
           SLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVH
Sbjct: 181 SLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVH 240

Query: 241 TVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDE 300
           TVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDE
Sbjct: 241 TVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDE 300

Query: 301 VHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTT 360
           VHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTT
Sbjct: 301 VHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTT 360

Query: 361 PYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTE 420
           PYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTE
Sbjct: 361 PYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTE 420

Query: 421 VQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNELKGETMDTS 463
           VQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNELKGETMDTS
Sbjct: 421 VQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNELKGETMDTS 463


>gi|4506753 RuvB-like 1 [Homo sapiens]
          Length = 456

 Score =  375 bits (962), Expect = e-104
 Identities = 195/456 (42%), Positives = 301/456 (66%), Gaps = 15/456 (3%)

Query: 9   KVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKI 68
           K+ E++  T+ +RI +HSH++GLGLD++   +QA+ G+VGQ  AR A GV++E+I+  K+
Sbjct: 2   KIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKM 61

Query: 69  AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIG 128
           AGRAVL+AG PGTGKTA+A+ +AQ LG   PF  + GSE++S E+ KTE L + FRR+IG
Sbjct: 62  AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIG 121

Query: 129 VRIKEETEIIEGEVVEI---QIDRPATGTGSKVGK--LTLKTTEMETIYDLGTKMIESLT 183
           +RIKE  E+ EGEV E+   + + P  G G  +    + LKT +      L   + ESL 
Sbjct: 122 LRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQ 181

Query: 184 KDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVS 243
           K++V+AGDVI I+  +G + + GR  T A ++D    +  +V  P G++ K+KE++  V+
Sbjct: 182 KERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEE--YVPLPKGDVHKKKEIIQDVT 239

Query: 244 LHEIDVINSRTQG-------FLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVL 296
           LH++DV N+R QG          L      EI  ++R +IN  V ++ ++G AE++PGVL
Sbjct: 240 LHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVL 299

Query: 297 FIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGT-SYQSPHGIPIDLLDRLL 355
           F+DEVHMLDIE F++L+RALES +AP++I A+NRG   IRGT    SPHGIP+DLLDR++
Sbjct: 300 FVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVM 359

Query: 356 IVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRK 415
           I+ T  Y+ ++ KQI++IR + E + +SE+A   L  IG +T+LRY++QL+T A+L+ + 
Sbjct: 360 IIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKI 419

Query: 416 RKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFL 451
                ++ + ++ +  LF D   S + + + QD ++
Sbjct: 420 NGKDSIEKEHVEEISELFYDAKSSAKILADQQDKYM 455


>gi|45643125 nuclear VCP-like isoform 2 [Homo sapiens]
          Length = 750

 Score = 39.3 bits (90), Expect = 0.008
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 66  GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTE-ALTQAFR 124
           G +    VL+AG PG GKT +A  +A   G +  F ++ G E+ ++ + ++E A+ Q F+
Sbjct: 505 GLVTPAGVLLAGPPGCGKTLLAKAVANESGLN--FISVKGPELLNMYVGESERAVRQVFQ 562

Query: 125 RSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEME 169
           R+   +      I   EV  +   R    TG+ V  +    TEM+
Sbjct: 563 RA---KNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMD 604



 Score = 33.9 bits (76), Expect = 0.32
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 66  GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTE-ALTQAFR 124
           G +  R VL+ G PG GKT +A  +A  L  D P   +A  EI S    ++E  L + F 
Sbjct: 188 GVVPPRGVLLHGPPGCGKTLLAHAIAGEL--DLPILKVAAPEIVSGVSGESEQKLRELFE 245

Query: 125 RSI 127
           +++
Sbjct: 246 QAV 248


>gi|45643123 nuclear VCP-like isoform 1 [Homo sapiens]
          Length = 856

 Score = 39.3 bits (90), Expect = 0.008
 Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 66  GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTE-ALTQAFR 124
           G +    VL+AG PG GKT +A  +A   G +  F ++ G E+ ++ + ++E A+ Q F+
Sbjct: 611 GLVTPAGVLLAGPPGCGKTLLAKAVANESGLN--FISVKGPELLNMYVGESERAVRQVFQ 668

Query: 125 RSIGVRIKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEME 169
           R+   +      I   EV  +   R    TG+ V  +    TEM+
Sbjct: 669 RA---KNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMD 710



 Score = 33.9 bits (76), Expect = 0.32
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 66  GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTE-ALTQAFR 124
           G +  R VL+ G PG GKT +A  +A  L  D P   +A  EI S    ++E  L + F 
Sbjct: 294 GVVPPRGVLLHGPPGCGKTLLAHAIAGEL--DLPILKVAAPEIVSGVSGESEQKLRELFE 351

Query: 125 RSI 127
           +++
Sbjct: 352 QAV 354


>gi|157671927 spermatogenesis associated 5 [Homo sapiens]
          Length = 893

 Score = 37.4 bits (85), Expect = 0.029
 Identities = 26/56 (46%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 69  AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEA-LTQAF 123
           A R VL+ G PGTGKT IA  +A  +G     + I G EI S    +TEA L Q F
Sbjct: 386 APRGVLLYGPPGTGKTMIARAVANEVG--AYVSVINGPEIISKFYGETEAKLRQIF 439


>gi|21327685 YME1-like 1 isoform 1 [Homo sapiens]
          Length = 773

 Score = 36.6 bits (83), Expect = 0.049
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 15/88 (17%)

Query: 32  GLDDALEPRQAS----QGMVGQLAARRAAGVVLEMIRE--------GKIAGRAVLIAGQP 79
           GLD A++P Q      + + G   A++    V+E ++         GK+  + +L+ G P
Sbjct: 323 GLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKLP-KGILLVGPP 381

Query: 80  GTGKTAIAMGMAQALGPDTPFTAIAGSE 107
           GTGKT +A  +A     D PF   +GSE
Sbjct: 382 GTGKTLLARAVAGE--ADVPFYYASGSE 407


>gi|7657689 YME1-like 1 isoform 3 [Homo sapiens]
          Length = 716

 Score = 36.6 bits (83), Expect = 0.049
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 15/88 (17%)

Query: 32  GLDDALEPRQAS----QGMVGQLAARRAAGVVLEMIRE--------GKIAGRAVLIAGQP 79
           GLD A++P Q      + + G   A++    V+E ++         GK+  + +L+ G P
Sbjct: 266 GLDSAVDPVQMKNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKLP-KGILLVGPP 324

Query: 80  GTGKTAIAMGMAQALGPDTPFTAIAGSE 107
           GTGKT +A  +A     D PF   +GSE
Sbjct: 325 GTGKTLLARAVAGE--ADVPFYYASGSE 350


>gi|28882049 replication factor C 2 isoform 2 [Homo sapiens]
          Length = 320

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 64  REGKIAGRAVLIAGQPGTGKTAIAMGMAQA-LGPDTPFTAIAGSEIFSLEMSKTEALTQA 122
           REG +    ++IAG PGTGKT   + +A+A LGP      +   E+ +   S T+   QA
Sbjct: 65  REGNVPN--IIIAGPPGTGKTTSILCLARALLGPALKDAML---ELNASNDSMTDGAQQA 119

Query: 123 FRRSIGVRIK 132
            RR++ +  K
Sbjct: 120 LRRTMEIYSK 129


>gi|6005942 valosin-containing protein [Homo sapiens]
          Length = 806

 Score = 34.3 bits (77), Expect = 0.25
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 71  RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEA-LTQAFRRS 126
           R +L+ G PGTGKT IA  +A   G    F  I G EI S    ++E+ L +AF  +
Sbjct: 239 RGILLYGPPGTGKTLIARAVANETG--AFFFLINGPEIMSKLAGESESNLRKAFEEA 293



 Score = 31.6 bits (70), Expect = 1.6
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 61  EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEA 118
           + ++ G    + VL  G PG GKT +A  +A        F +I G E+ ++   ++EA
Sbjct: 502 KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QANFISIKGPELLTMWFGESEA 557


>gi|42476028 ATPase family, AAA domain containing 3A [Homo sapiens]
          Length = 634

 Score = 33.9 bits (76), Expect = 0.32
 Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 5/114 (4%)

Query: 13  IRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMV--GQLAAR-RAAGVVLEMIREGKIA 69
           +R+ +RI  + A  H   +       P+ A +G+V    L AR R   +     ++ +  
Sbjct: 333 VRETSRITVLEALRHPIQVSRRLLSRPQDALEGVVLSPSLEARVRDIAIATRNTKKNRSL 392

Query: 70  GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAF 123
            R +L+ G PGTGKT  A  +A   G D  +  + G ++  +      A+ + F
Sbjct: 393 YRNILMYGPPGTGKTLFAKKLALHSGMD--YAIMTGGDVAPMGREGVTAMHKLF 444


>gi|194018490 ATPase family, AAA domain containing 3C [Homo sapiens]
          Length = 411

 Score = 33.9 bits (76), Expect = 0.32
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 13  IRDVTRIERIGAHSH-IRGLGLDDALEPRQASQGMV--GQLAAR-RAAGVVLEMIREGKI 68
           +R+ +RI  + A  H I+ +       P+   +G+V    L AR R   ++   I++ + 
Sbjct: 109 VRETSRITVLEALRHPIQQVSRRLLSRPQDVLEGVVLSPSLEARVRDIAIMTRNIKKNRG 168

Query: 69  AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAF 123
             R +L+ G PGTGKT  A  +A   G D  +  + G ++  +      A+ + F
Sbjct: 169 LYRHILLYGPPGTGKTLFAKKLALHSGMD--YAIMTGGDVAPMGREGVTAMHKLF 221


>gi|226371754 katanin p60 subunit A-like 2 [Homo sapiens]
          Length = 466

 Score = 33.5 bits (75), Expect = 0.42
 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 4/95 (4%)

Query: 71  RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVR 130
           + +L+ G PGTGKT +A  +A      T F  I+ S I S     +E L +        R
Sbjct: 216 KGLLLYGPPGTGKTLLAKAVATEC--KTTFFNISASTIVSKWRGDSEKLVRVLFEL--AR 271

Query: 131 IKEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKT 165
               + I   E+  +   R     G   G L +KT
Sbjct: 272 YHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKT 306


>gi|26080431 ATPase family, AAA domain containing 5 [Homo sapiens]
          Length = 1844

 Score = 33.5 bits (75), Expect = 0.42
 Identities = 54/261 (20%), Positives = 91/261 (34%), Gaps = 46/261 (17%)

Query: 25   HSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGR---AVLIAGQPGT 81
            HS ++       LE RQ  +G   +     + G+  +   + +   R    VLI G  G 
Sbjct: 1077 HSWLKDWKRRAELEERQNLKGKRDEKHEDFSGGIDFKGSSDDEEESRLCNTVLITGPTGV 1136

Query: 82   GKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIEGE 141
            GKTA     AQ LG                ++ +  A +Q   R I  ++KE T+  + +
Sbjct: 1137 GKTAAVYACAQELG---------------FKIFEVNASSQRSGRQILSQLKEATQSHQVD 1181

Query: 142  VVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKM----------------------- 178
               +   +P       +GK   K +  + +     K+                       
Sbjct: 1182 KQGVNSQKPCFFNSYYIGKSPKKISSPKKVVTSPRKVPPPSPKSSGPKRALPPKTLANYF 1241

Query: 179  -IESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKE 237
             +    K+  + G ++  +K   K S   +  T+ +  +A  S  K V     E   RK 
Sbjct: 1242 KVSPKPKNNEEIGMLLENNKGI-KNSFEQKQITQTKSTNATNSNVKDV---GAEEPSRKN 1297

Query: 238  VVHTVSLHEIDVINSRTQGFL 258
                +   E+DVI     GFL
Sbjct: 1298 ATSLILFEEVDVIFDEDAGFL 1318


>gi|24497435 proteasome 26S ATPase subunit 5 [Homo sapiens]
          Length = 406

 Score = 32.3 bits (72), Expect = 0.93
 Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 21/143 (14%)

Query: 71  RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVR 130
           + VL+ G PGTGKT +A  +A     D  F  ++GSE+    + +   +     R + V 
Sbjct: 184 KGVLLYGPPGTGKTLLARAVAH--HTDCTFIRVSGSELVQKFIGEGARMV----RELFVM 237

Query: 131 IKEETE--IIEGEVVEIQIDRPATGTGSKVGKLTLKTTEMETIYDLGTKMIESLTKDKVQ 188
            +E     I   E+  I   R   G+G   G   ++ T +E +  L          D  +
Sbjct: 238 AREHAPSIIFMDEIDSIGSSRLEGGSG---GDSEVQRTMLELLNQL----------DGFE 284

Query: 189 AGDVITIDKATGKISKLGRSFTR 211
           A   I +  AT +I  L  +  R
Sbjct: 285 ATKNIKVIMATNRIDILDSALLR 307


>gi|17865802 vacuolar protein sorting factor 4B [Homo sapiens]
          Length = 444

 Score = 32.3 bits (72), Expect = 0.93
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 71  RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQ 121
           R +L+ G PGTGK+ +A  +A      T F +I+ S++ S  + ++E L +
Sbjct: 168 RGILLFGPPGTGKSYLAKAVATEANNST-FFSISSSDLVSKWLGESEKLVK 217


>gi|7019569 vacuolar protein sorting factor 4A [Homo sapiens]
          Length = 437

 Score = 32.3 bits (72), Expect = 0.93
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 71  RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQ 121
           R +L+ G PGTGK+ +A  +A      T F +++ S++ S  + ++E L +
Sbjct: 161 RGILLFGPPGTGKSYLAKAVATEANNST-FFSVSSSDLMSKWLGESEKLVK 210


>gi|62177112 katanin p60 subunit A-like 1 [Homo sapiens]
          Length = 490

 Score = 32.3 bits (72), Expect = 0.93
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 71  RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQ 121
           + VL+ G PGTGKT +A  +A   G  T F  ++ S + S    ++E L +
Sbjct: 242 KGVLMVGPPGTGKTMLAKAVATECG--TTFFNVSSSTLTSKYRGESEKLVR 290


>gi|14149767 katanin p60 subunit A-like 1 [Homo sapiens]
          Length = 490

 Score = 32.3 bits (72), Expect = 0.93
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 71  RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQ 121
           + VL+ G PGTGKT +A  +A   G  T F  ++ S + S    ++E L +
Sbjct: 242 KGVLMVGPPGTGKTMLAKAVATECG--TTFFNVSSSTLTSKYRGESEKLVR 290


>gi|75677353 AAA-ATPase  TOB3 [Homo sapiens]
          Length = 648

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 5/114 (4%)

Query: 13  IRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMV--GQLAAR-RAAGVVLEMIREGKIA 69
           +R+ +RI  + A  H   +       P+   +G+V    L AR R   +     ++ +  
Sbjct: 285 VRETSRITVLEALRHPIQVSRRLLSRPQDVLEGVVLSPSLEARVRDIAIATRNTKKNRGL 344

Query: 70  GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAF 123
            R +L+ G PGTGKT  A  +A   G D  +  + G ++  +      A+ + F
Sbjct: 345 YRHILLYGPPGTGKTLFAKKLALHSGMD--YAIMTGGDVAPMGREGVTAMHKLF 396


>gi|5802970 AFG3 ATPase family gene 3-like 2 [Homo sapiens]
          Length = 797

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 71  RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111
           +  ++ G PGTGKT +A   A A   + PF  ++GSE   +
Sbjct: 342 KGAILTGPPGTGKTLLA--KATAGEANVPFITVSGSEFLEM 380


>gi|24415404 MDN1, midasin homolog [Homo sapiens]
          Length = 5596

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 16/45 (35%), Positives = 24/45 (53%)

Query: 51  AARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95
           AA R + V++E +      G  VL+ G+ GTGKT+    +A   G
Sbjct: 651 AATRPSSVLIEQLAVCVSKGEPVLLVGETGTGKTSTIQYLAHITG 695


>gi|31563534 replication factor C 2 isoform 1 [Homo sapiens]
          Length = 354

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 3/34 (8%)

Query: 64 REGKIAGRAVLIAGQPGTGKTAIAMGMAQA-LGP 96
          REG +    ++IAG PGTGKT   + +A+A LGP
Sbjct: 65 REGNVPN--IIIAGPPGTGKTTSILCLARALLGP 96


>gi|222537754 hypothetical protein LOC375337 [Homo sapiens]
          Length = 1692

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 12/133 (9%)

Query: 164 KTTEMETIYDLGTKMIESLTKDKVQAGDVITID----KATGKISKLGRSFTRARDYDAMG 219
           K  + E +   G+++I + T+D     +  ++     KA G ++KL  + T     +A  
Sbjct: 594 KKIKSEELSRRGSEVISNTTEDTQLTSETQSLTGNKKKARGNLTKLNLTATSKDGQEANN 653

Query: 220 SQTKFVQCPDGELQKRKEVVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAK 279
           S  K +         RK  +   +    D++     G L  F     + KSE R+++NAK
Sbjct: 654 SAGKTIH--------RKACIAQQTFIVPDLVKILNTGRLTNFKIPLLKNKSEKRKEVNAK 705

Query: 280 VAEWREEGKAEII 292
            +E       E++
Sbjct: 706 SSEREAYSPLELL 718


>gi|18375650 protein tyrosine phosphatase, non-receptor type 13
            isoform 4 [Homo sapiens]
          Length = 2490

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 16/65 (24%), Positives = 31/65 (47%)

Query: 80   GTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIE 139
            G G  ++      AL P+  F+ +AG EI  +   K +  T   + S  + + +E+ I E
Sbjct: 1991 GNGSYSVGSCSQPALTPNDSFSTVAGEEINEISYPKGKCSTYQIKGSPNLTLPKESYIQE 2050

Query: 140  GEVVE 144
             ++ +
Sbjct: 2051 DDIYD 2055


>gi|18375648 protein tyrosine phosphatase, non-receptor type 13
            isoform 3 [Homo sapiens]
          Length = 2294

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 16/65 (24%), Positives = 31/65 (47%)

Query: 80   GTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIE 139
            G G  ++      AL P+  F+ +AG EI  +   K +  T   + S  + + +E+ I E
Sbjct: 1795 GNGSYSVGSCSQPALTPNDSFSTVAGEEINEISYPKGKCSTYQIKGSPNLTLPKESYIQE 1854

Query: 140  GEVVE 144
             ++ +
Sbjct: 1855 DDIYD 1859


>gi|18375646 protein tyrosine phosphatase, non-receptor type 13
            isoform 1 [Homo sapiens]
          Length = 2485

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 16/65 (24%), Positives = 31/65 (47%)

Query: 80   GTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIE 139
            G G  ++      AL P+  F+ +AG EI  +   K +  T   + S  + + +E+ I E
Sbjct: 1986 GNGSYSVGSCSQPALTPNDSFSTVAGEEINEISYPKGKCSTYQIKGSPNLTLPKESYIQE 2045

Query: 140  GEVVE 144
             ++ +
Sbjct: 2046 DDIYD 2050


>gi|5453992 protein tyrosine phosphatase, non-receptor type 13 isoform
            2 [Homo sapiens]
          Length = 2466

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 16/65 (24%), Positives = 31/65 (47%)

Query: 80   GTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKEETEIIE 139
            G G  ++      AL P+  F+ +AG EI  +   K +  T   + S  + + +E+ I E
Sbjct: 1967 GNGSYSVGSCSQPALTPNDSFSTVAGEEINEISYPKGKCSTYQIKGSPNLTLPKESYIQE 2026

Query: 140  GEVVE 144
             ++ +
Sbjct: 2027 DDIYD 2031


>gi|195539395 proteasome 26S ATPase subunit 6 [Homo sapiens]
          Length = 403

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 64  REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108
           R G I  +  L+ G PGTGKT +A  +A  L  D  F  +  S I
Sbjct: 175 RVGIIPPKGCLLYGPPGTGKTLLARAVASQL--DCNFLKVVSSSI 217


>gi|11321607 thyroid hormone receptor interactor 13 [Homo sapiens]
          Length = 432

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 71  RAVLIAGQPGTGKTAIAMGMAQAL 94
           R VL+ G PGTGKT++   +AQ L
Sbjct: 173 RVVLLHGPPGTGKTSLCKALAQKL 196


>gi|40806170 spastin isoform 2 [Homo sapiens]
          Length = 584

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 16/127 (12%)

Query: 5   TATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQ--GMVGQLAARRAAG--VVL 60
           TAT K  ++++   ++     S++  L +++ ++   A +   + GQ  A++A    V+L
Sbjct: 274 TATRKKKDLKNFRNVD-----SNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVIL 328

Query: 61  EMIREGKIAG-----RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSK 115
             +R     G     R +L+ G PG GKT +A   A A   +  F  I+ + + S  + +
Sbjct: 329 PSLRPELFTGLRAPARGLLLFGPPGNGKTMLA--KAVAAESNATFFNISAASLTSKYVGE 386

Query: 116 TEALTQA 122
            E L +A
Sbjct: 387 GEKLVRA 393


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.133    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,669,821
Number of Sequences: 37866
Number of extensions: 590087
Number of successful extensions: 1857
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1827
Number of HSP's gapped (non-prelim): 59
length of query: 463
length of database: 18,247,518
effective HSP length: 106
effective length of query: 357
effective length of database: 14,233,722
effective search space: 5081438754
effective search space used: 5081438754
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.