Guide to the Human Genome
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Name: C3orf77 Sequence: fasta or formatted (1692aa) NCBI GI: 222537754
Description:

hypothetical protein LOC375337

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         81           2
 C cysteine            2.6         44           2
 D aspartate           4.3         73           2
 E glutamate           9.0        152           2
 F phenylalanine       3.4         57           1
 G glycine             4.7         79           2
 H histidine           1.7         29           2
 I isoleucine          4.8         81           2
 K lysine              9.0        153           3
 L leucine            10.2        172           3
 M methionine          2.2         38           3
 N asparagine          6.0        102           2
 P proline             4.9         83           3
 Q glutamine           3.8         64           2
 R arginine            4.8         81           2
 S serine             10.0        169           3
 T threonine           4.7         79           2
 V valine              5.9        100           1
 W tryptophan          0.9         15           1
 Y tyrosine            2.4         40           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC375337 
RGPD4                 0.007   RANBP2-like and GRIP domain containing 4 
MAP7D3                0.007   MAP7 domain containing 3 
RANBP2                0.006   RAN binding protein 2 
RGPD1                 0.005   RANBP2-like and GRIP domain containing 1 
RGPD2                 0.005   RANBP2-like and GRIP domain containing 2 
ANKRD12               0.005   ankyrin repeat domain 12 isoform 2 
ANKRD12               0.005   ankyrin repeat domain 12 isoform 1 
RB1CC1                0.005   Rb1-inducible coiled coil protein 1 isoform 2 [Homo...
RB1CC1                0.005   Rb1-inducible coiled coil protein 1 isoform 1 [Homo...
DSP                   0.005   desmoplakin isoform I 
CENPF                 0.004   centromere protein F 
CLIP1                 0.004   restin isoform b 
CLIP1                 0.004   restin isoform a 
MYH10                 0.004   myosin, heavy polypeptide 10, non-muscle 
CCDC88A               0.004   coiled-coil domain containing 88A isoform 2 
CDK5RAP2              0.004   CDK5 regulatory subunit associated protein 2 isoform...
CDK5RAP2              0.004   CDK5 regulatory subunit associated protein 2 isoform...
CAGE1                 0.004   cancer antigen 1 
TET1                  0.004   CXXC finger 6 
CEP164                0.004   centrosomal protein 164kDa 
CCDC88A               0.004   coiled-coil domain containing 88A isoform 1 
RSF1                  0.004   remodeling and spacing factor 1 
EEA1                  0.004   early endosome antigen 1, 162kD 
FAM184A               0.004   hypothetical protein LOC79632 isoform 2 
FAM184A               0.004   hypothetical protein LOC79632 isoform 1 
PPL                   0.004   periplakin 
WDR87                 0.004   NYD-SP11 protein 
LOC100131251          0.004   PREDICTED: hypothetical protein 
LOC100131251          0.004   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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