Guide to the Human Genome
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Name: CYB561D1 Sequence: fasta or formatted (251aa) NCBI GI: 197304721
Description:

cytochrome b-561 domain containing 1 isoform 1

Referenced in:

Iron, Copper, and Arsenic Metabolism

Other entries for this name:
alt prot [172aa] cytochrome b-561 domain containing 1 isoform 3
alt prot [133aa] cytochrome b-561 domain containing 1 isoform 4
alt prot [128aa] cytochrome b-561 domain containing 1 isoform 5
alt prot [229aa] cytochrome b-561 domain containing 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.6         29           2
 C cysteine            3.6          9           1
 D aspartate           0.8          2           1
 E glutamate           4.4         11           1
 F phenylalanine       3.6          9           3
 G glycine             7.6         19           2
 H histidine           2.8          7           1
 I isoleucine          4.4         11           2
 K lysine              2.4          6           2
 L leucine            16.7         42           2
 M methionine          3.6          9           1
 N asparagine          0.0          0           0
 P proline             5.6         14           1
 Q glutamine           2.4          6           1
 R arginine            7.6         19           2
 S serine              6.4         16           2
 T threonine           4.8         12           1
 V valine              6.4         16           2
 W tryptophan          3.2          8           1
 Y tyrosine            2.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cytochrome b-561 domain containing 1 isoform 1 [Hom... 
CYB561D1              0.819   cytochrome b-561 domain containing 1 isoform 2 [Homo...
CYB561D1              0.658   cytochrome b-561 domain containing 1 isoform 3 [Hom...
CYB561D2              0.315   cytochrome b-561 domain containing 2 
CYB561D1              0.311   cytochrome b-561 domain containing 1 isoform 5 [Hom...
CYB561D1              0.307   cytochrome b-561 domain containing 1 isoform 4 [Hom...
CYB561                0.043   cytochrome b-561 
CYB561                0.043   cytochrome b-561 
CYB561                0.043   cytochrome b-561 
TCTN1                 0.039   tectonic family member 1 isoform 3 
CYBRD1                0.039   cytochrome b reductase 1 isoform 1 
C8orf44               0.033   hypothetical protein LOC56260 
LOC391359             0.025   PREDICTED: similar to hCG1784039 
CYBASC3               0.025   cytochrome b, ascorbate dependent 3 isoform 2 [Homo...
CYBASC3               0.025   cytochrome b, ascorbate dependent 3 isoform 1 [Homo...
CYBASC3               0.025   cytochrome b, ascorbate dependent 3 isoform 2 [Homo...
LOC360030             0.025   homeobox C14 
LOC100293561          0.021   PREDICTED: similar to Protein MOST-1 
LOC100294457          0.016   PREDICTED: similar to hCG2038988 
LMLN                  0.012   leishmanolysin-like isoform 1 
LMLN                  0.012   leishmanolysin-like isoform 2 
RHCE                  0.012   Rhesus blood group, CcEe antigens isoform 2 
RHCE                  0.012   Rhesus blood group, CcEe antigens isoform 4 
RHCE                  0.012   Rhesus blood group, CcEe antigens isoform 3 
RHCE                  0.012   Rhesus blood group, CcEe antigens isoform 1 
LOC100133899          0.010   PREDICTED: hypothetical protein 
LOC100290382          0.010   PREDICTED: hypothetical protein XP_002347011 
LOC100289617          0.010   PREDICTED: hypothetical protein XP_002342956 
RHD                   0.010   Rh blood group D antigen isoform 2 
RHD                   0.010   Rh blood group D antigen isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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