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Search of human proteins with 57164948
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|57164948 solute carrier family 30 (zinc transporter), member
9 [Homo sapiens]
(568 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57164948 solute carrier family 30 (zinc transporter), member ... 1125 0.0
gi|4507937 xeroderma pigmentosum, complementation group A [Homo ... 51 3e-06
gi|148664197 coiled-coil domain containing 40 [Homo sapiens] 35 0.18
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 34 0.41
gi|148839339 nexilin (F actin binding protein) [Homo sapiens] 33 0.92
gi|148664236 B-cell novel protein 1 isoform b [Homo sapiens] 33 0.92
gi|31542207 B-cell novel protein 1 isoform a [Homo sapiens] 33 0.92
gi|21359890 solute carrier family 30 (zinc transporter), member ... 32 1.2
gi|20070323 solute carrier family 30 (zinc transporter), member ... 32 1.2
gi|142976783 PDZ domain containing RING finger 4 [Homo sapiens] 32 2.0
gi|33598968 LIM domain only 7 isoform 1 [Homo sapiens] 31 2.7
gi|41152097 DNA segment on chromosome X and Y (unique) 155 expre... 31 2.7
gi|221316634 LIM domain only 7 isoform 2 [Homo sapiens] 31 2.7
gi|148539876 beta-adrenergic receptor kinase 1 [Homo sapiens] 31 3.5
gi|156104874 envoplakin [Homo sapiens] 31 3.5
gi|148746195 trichohyalin [Homo sapiens] 30 4.5
gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4... 30 4.5
gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3 ... 30 4.5
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens] 30 5.9
gi|33620759 LRP2 binding protein [Homo sapiens] 30 5.9
gi|21450665 coiled-coil domain containing 138 [Homo sapiens] 30 5.9
gi|40255180 coiled-coil domain containing 83 [Homo sapiens] 30 5.9
gi|87578396 microtubule-associated protein 2 isoform 1 [Homo sap... 30 7.8
gi|33946313 ninein isoform 4 [Homo sapiens] 30 7.8
gi|33946321 ninein isoform 5 [Homo sapiens] 30 7.8
gi|148536871 ninein isoform 1 [Homo sapiens] 30 7.8
gi|148536869 ninein isoform 2 [Homo sapiens] 30 7.8
gi|88196790 coiled-coil domain containing 88 [Homo sapiens] 30 7.8
>gi|57164948 solute carrier family 30 (zinc transporter), member 9
[Homo sapiens]
Length = 568
Score = 1125 bits (2911), Expect = 0.0
Identities = 568/568 (100%), Positives = 568/568 (100%)
Query: 1 MLPGLAAAAAHRCSWSSLCRLRLRCRAAACNPSDRQEWQNLVTFGSFSNMVPCSHPYIGT 60
MLPGLAAAAAHRCSWSSLCRLRLRCRAAACNPSDRQEWQNLVTFGSFSNMVPCSHPYIGT
Sbjct: 1 MLPGLAAAAAHRCSWSSLCRLRLRCRAAACNPSDRQEWQNLVTFGSFSNMVPCSHPYIGT 60
Query: 61 LSQVKLYSTNVQKEGQGSQTLRVEKVPSFETAEGIGTELKAPLKQEPLQVRVKAVLKKRE 120
LSQVKLYSTNVQKEGQGSQTLRVEKVPSFETAEGIGTELKAPLKQEPLQVRVKAVLKKRE
Sbjct: 61 LSQVKLYSTNVQKEGQGSQTLRVEKVPSFETAEGIGTELKAPLKQEPLQVRVKAVLKKRE 120
Query: 121 YGSKYTQNNFITGVRAINEFCLKSSDLEQLRKIRRRSPHEDTESFTVYLRSDVEAKSLEV 180
YGSKYTQNNFITGVRAINEFCLKSSDLEQLRKIRRRSPHEDTESFTVYLRSDVEAKSLEV
Sbjct: 121 YGSKYTQNNFITGVRAINEFCLKSSDLEQLRKIRRRSPHEDTESFTVYLRSDVEAKSLEV 180
Query: 181 WGSPEALAREKKLRKEAEIEYRERLFRNQKILREYRDFLGNTKPRSRTASVFFKGPGKVV 240
WGSPEALAREKKLRKEAEIEYRERLFRNQKILREYRDFLGNTKPRSRTASVFFKGPGKVV
Sbjct: 181 WGSPEALAREKKLRKEAEIEYRERLFRNQKILREYRDFLGNTKPRSRTASVFFKGPGKVV 240
Query: 241 MVAICINGLNCFFKFLAWIYTGSASMFSEAIHSLSDTCNQGLLALGISKSVQTPDPSHPY 300
MVAICINGLNCFFKFLAWIYTGSASMFSEAIHSLSDTCNQGLLALGISKSVQTPDPSHPY
Sbjct: 241 MVAICINGLNCFFKFLAWIYTGSASMFSEAIHSLSDTCNQGLLALGISKSVQTPDPSHPY 300
Query: 301 GFSNMRYISSLISGVGIFMMGAGLSWYHGVMGLLHPQPIESLLWAYCILAGSLVSEGATL 360
GFSNMRYISSLISGVGIFMMGAGLSWYHGVMGLLHPQPIESLLWAYCILAGSLVSEGATL
Sbjct: 301 GFSNMRYISSLISGVGIFMMGAGLSWYHGVMGLLHPQPIESLLWAYCILAGSLVSEGATL 360
Query: 361 LVAVNELRRNARAKGMSFYKYVMESRDPSTNVILLEDTAAVLGVIIAATCMGLTSITGNP 420
LVAVNELRRNARAKGMSFYKYVMESRDPSTNVILLEDTAAVLGVIIAATCMGLTSITGNP
Sbjct: 361 LVAVNELRRNARAKGMSFYKYVMESRDPSTNVILLEDTAAVLGVIIAATCMGLTSITGNP 420
Query: 421 LYDSLGSLGVGTLLGMVSAFLIYTNTEALLGRSIQPEQVQRLTELLENDPSVRAIHDVKA 480
LYDSLGSLGVGTLLGMVSAFLIYTNTEALLGRSIQPEQVQRLTELLENDPSVRAIHDVKA
Sbjct: 421 LYDSLGSLGVGTLLGMVSAFLIYTNTEALLGRSIQPEQVQRLTELLENDPSVRAIHDVKA 480
Query: 481 TDLGLGKVRFKAEVDFDGRVVTRSYLEKQDFDQMLQEIQEVKTPEELETFMLKHGENIID 540
TDLGLGKVRFKAEVDFDGRVVTRSYLEKQDFDQMLQEIQEVKTPEELETFMLKHGENIID
Sbjct: 481 TDLGLGKVRFKAEVDFDGRVVTRSYLEKQDFDQMLQEIQEVKTPEELETFMLKHGENIID 540
Query: 541 TLGAEVDRLEKELKKRNPEVRHVDLEIL 568
TLGAEVDRLEKELKKRNPEVRHVDLEIL
Sbjct: 541 TLGAEVDRLEKELKKRNPEVRHVDLEIL 568
>gi|4507937 xeroderma pigmentosum, complementation group A [Homo
sapiens]
Length = 273
Score = 50.8 bits (120), Expect = 3e-06
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Query: 127 QNNFITGVRAINEFCLKSSDLEQ----LRKIRRRSPHEDT-ESFTVYLRSDVEAKSLEVW 181
++ IT A E+ LK DLE+ L+ I +++PH +YL+ + +SLEVW
Sbjct: 135 KHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVW 194
Query: 182 GSPEALAREKKLRKEAEIEYRERLFRNQKILREYR 216
GS EAL K++R+E + +++ F K ++E R
Sbjct: 195 GSQEALEEAKEVRQENREKMKQKKF--DKKVKELR 227
>gi|148664197 coiled-coil domain containing 40 [Homo sapiens]
Length = 1142
Score = 35.0 bits (79), Expect = 0.18
Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 29/164 (17%)
Query: 51 VPCSHPYIGTLSQVKLYSTNVQKEG--QGSQTLRVEKVPSFETAEGIGTELKAPLKQEPL 108
VP +HP G L ++ +Q+ +G+ RVE S E AE G++L PL
Sbjct: 231 VPDAHPREGDLP---VFQDQIQQPSTEEGAMAERVESEGSDEEAEDEGSQLVVLDPDHPL 287
Query: 109 QVRVKAVLKKREYGSKYTQNNFITGVRAINEFCLKSSDLEQLRKIRRRSPHE------DT 162
VR +A LK N++ R I + L +L K R E +
Sbjct: 288 MVRFQAALK-----------NYLN--RQIEKLKLDLQELVVATKQSRAQRQELGVNLYEV 334
Query: 163 ESFTVYLRSDVEAKSLEVWGSPEALAREKKLRKEAEIEYRERLF 206
+ V+L+ K LE A+A ++ +KE E++ L+
Sbjct: 335 QQHLVHLQ-----KLLEKSHDRHAMASSERRQKEEELQAARALY 373
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 33.9 bits (76), Expect = 0.41
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 482 DLGLGKVRFKAEVDFDGRVVTRSYLEKQDFDQMLQEIQEVKTPEELETFMLKHGENIIDT 541
DL K + EV+ R V + +K D ++ + T E+E LKH E+I+D
Sbjct: 1365 DLLQEKKSLECEVEELHRTVQKRQQQKDFIDG---NVESLMTELEIEK-SLKHHEDIVD- 1419
Query: 542 LGAEVDRLEKELKKRNPEVRHVD 564
E++ +EK L KR E+R D
Sbjct: 1420 ---EIECIEKTLLKRRSELREAD 1439
>gi|148839339 nexilin (F actin binding protein) [Homo sapiens]
Length = 675
Score = 32.7 bits (73), Expect = 0.92
Identities = 34/167 (20%), Positives = 71/167 (42%), Gaps = 12/167 (7%)
Query: 84 EKVPSFETAEGIGTELKAPLKQEPLQVRVKAVLKKREYGSKYTQNNFITGVRAINEFCLK 143
++ E GTE + + L + V V + G + R E +K
Sbjct: 145 KRAEQIEDINNTGTESASEEGDDSLLITVVPVKSYKTSGKMKKNFEDLEKEREEKER-IK 203
Query: 144 SSDLEQLRKIRRRSPHEDTESFTVYLRSDVEAKSLEVWGSPEALA---------REKKLR 194
+ +++R +R ++ + ++ + ++E+++ + SP L R++ +
Sbjct: 204 YEEDKRIRYEEQRPSLKEAKCLSLVMDDEIESEAKKESLSPGKLKLTFEELERQRQENRK 263
Query: 195 KEAEIEYRERLFRNQKILREYRDFLGNTKPRSRTASVFFKG--PGKV 239
K+AE E R+RL ++ E R + N ++ + FKG PGK+
Sbjct: 264 KQAEEEARKRLEEEKRAFEEARRQMVNEDEENQDTAKIFKGYRPGKL 310
>gi|148664236 B-cell novel protein 1 isoform b [Homo sapiens]
Length = 651
Score = 32.7 bits (73), Expect = 0.92
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 31 NPSDRQEWQNL--VTFGSFSNMVPCSHPYIGTLSQVKLYSTNVQ---KEGQGSQTLRVEK 85
+P D+Q+ Q+L N +PC Y G L+ L + + +E GSQ LR +K
Sbjct: 38 SPLDKQQRQHLRGQVDTLLRNFLPC---YRGQLAASVLRQISRELGPQEPTGSQLLRSKK 94
Query: 86 VPSFETAEGIGTELKA-PLKQEPL--QVRVKAVLKKREYGSKYTQNNFITGVRAINEFCL 142
+P G T+L+ P + +P+ +R L+ + +Y G A+ + L
Sbjct: 95 LPRVREHRGPLTQLRGHPPRWQPIFCVLRGDGRLEWFSHKEEYENGGHCLGSTALTGYTL 154
Query: 143 KSSDLEQLRKIRRRSP 158
+S E LR + P
Sbjct: 155 LTSQREYLRLLDALCP 170
>gi|31542207 B-cell novel protein 1 isoform a [Homo sapiens]
Length = 697
Score = 32.7 bits (73), Expect = 0.92
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 31 NPSDRQEWQNL--VTFGSFSNMVPCSHPYIGTLSQVKLYSTNVQ---KEGQGSQTLRVEK 85
+P D+Q+ Q+L N +PC Y G L+ L + + +E GSQ LR +K
Sbjct: 38 SPLDKQQRQHLRGQVDTLLRNFLPC---YRGQLAASVLRQISRELGPQEPTGSQLLRSKK 94
Query: 86 VPSFETAEGIGTELKA-PLKQEPL--QVRVKAVLKKREYGSKYTQNNFITGVRAINEFCL 142
+P G T+L+ P + +P+ +R L+ + +Y G A+ + L
Sbjct: 95 LPRVREHRGPLTQLRGHPPRWQPIFCVLRGDGRLEWFSHKEEYENGGHCLGSTALTGYTL 154
Query: 143 KSSDLEQLRKIRRRSP 158
+S E LR + P
Sbjct: 155 LTSQREYLRLLDALCP 170
>gi|21359890 solute carrier family 30 (zinc transporter), member 4
[Homo sapiens]
Length = 429
Score = 32.3 bits (72), Expect = 1.2
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 263 SASMFSEAIHSLSDTCNQGLLALGISKSVQTPDPSHPYGFSNMRYISSLISGVGIFMMGA 322
S ++ ++A+H L+D L L + S ++P +GF + +S++IS + ++++
Sbjct: 137 SLAIMTDALHMLTDLSAIILTLLALWLSSKSPTKRFTFGFHRLEVLSAMISVLLVYIL-M 195
Query: 323 GLSWYHGVMGLLH 335
G Y V +H
Sbjct: 196 GFLLYEAVQRTIH 208
>gi|20070323 solute carrier family 30 (zinc transporter), member 5
isoform 1 [Homo sapiens]
Length = 765
Score = 32.3 bits (72), Expect = 1.2
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 244 ICINGLNCFFKFLAWIYTGSASMFSEAIHSLSDTCN---QGLLALGISKSVQTPDPSHPY 300
+C+N L F + + T S + S+ H L D C+ GL A +S+ T S Y
Sbjct: 423 LCLNLLFTFVELFYGVLTNSLGLISDGFHMLFD-CSALVMGLFAALMSRWKATRIFS--Y 479
Query: 301 GFSNMRYISSLISGVGIFMMGAGLSWYHGVMGLLHPQPIESLLWAYCILAGSLVS 355
G+ + +S I+G+ + ++ A + V L+ P +++ + + G +V+
Sbjct: 480 GYGRIEILSGFINGLFLIVI-AFFVFMESVARLIDPPELDTHMLTPVSVGGLIVN 533
>gi|142976783 PDZ domain containing RING finger 4 [Homo sapiens]
Length = 778
Score = 31.6 bits (70), Expect = 2.0
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
Query: 468 NDPSVRAIHDVKATDLGLGKVRFKAEVDFDGRVVTRSYLEKQDFDQMLQEIQEVKTPEEL 527
N S+++ D+ + LG V E+ ++ +V+ Y++ ++ + + EL
Sbjct: 320 NSTSLKSKRDLGQSQDTLGSV----ELQYNESLVSGEYIDSDCIGNPDEDCERFRQLLEL 375
Query: 528 ETFMLKHGE-------NIIDTLGAEVDRLEKELKKRNPEVRHVDLE 566
+ + HGE + I+ E + +E EL+ N E+R+++LE
Sbjct: 376 KCKIRNHGEYDLYYSSSTIECNQGEQEGVEHELQLLNEELRNIELE 421
>gi|33598968 LIM domain only 7 isoform 1 [Homo sapiens]
Length = 1349
Score = 31.2 bits (69), Expect = 2.7
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 138 NEFCLKSSDLEQLRKIRRRSPHEDTESFTVYLRS----DVEAKSLEVWGSPEALAREKKL 193
N F K+S+ L+ ++RRS + S + + A S VW E R+++
Sbjct: 844 NAFESKASESISLKNLKRRSQFFEQGSSDSVVPDLPVPTISAPSRWVWDQEEERKRQERW 903
Query: 194 RKEAEIEYRERLFRNQKILRE 214
+KE + +E+ R Q+ LRE
Sbjct: 904 QKEQDRLLQEKYQREQEKLRE 924
>gi|41152097 DNA segment on chromosome X and Y (unique) 155
expressed sequence isoform 1 [Homo sapiens]
Length = 695
Score = 31.2 bits (69), Expect = 2.7
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 143 KSSDLEQLRKIRRRSPHEDTESFTVYLRSDVEAKSLEVWGSPEALAREKKLRKEAEIEYR 202
K +LEQ R+ ++R E E R E + LE RE+KLRK + +
Sbjct: 277 KLQELEQQREEQKRREKEAEERQRAEERKQKELEELE-----RERKREEKLRKREQKQRD 331
Query: 203 ERLFRNQKILRE 214
L RNQK L +
Sbjct: 332 RELRRNQKKLEK 343
>gi|221316634 LIM domain only 7 isoform 2 [Homo sapiens]
Length = 1385
Score = 31.2 bits (69), Expect = 2.7
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 138 NEFCLKSSDLEQLRKIRRRSPHEDTESFTVYLRS----DVEAKSLEVWGSPEALAREKKL 193
N F K+S+ L+ ++RRS + S + + A S VW E R+++
Sbjct: 893 NAFESKASESISLKNLKRRSQFFEQGSSDSVVPDLPVPTISAPSRWVWDQEEERKRQERW 952
Query: 194 RKEAEIEYRERLFRNQKILRE 214
+KE + +E+ R Q+ LRE
Sbjct: 953 QKEQDRLLQEKYQREQEKLRE 973
>gi|148539876 beta-adrenergic receptor kinase 1 [Homo sapiens]
Length = 689
Score = 30.8 bits (68), Expect = 3.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 528 ETFMLKHGENIIDTLGAEVDRLEKELKKRNPEVRH 562
E + + E + DT+ AE DRLE K +N ++ H
Sbjct: 515 ERWQQEVAETVFDTINAETDRLEARKKAKNKQLGH 549
>gi|156104874 envoplakin [Homo sapiens]
Length = 2033
Score = 30.8 bits (68), Expect = 3.5
Identities = 17/70 (24%), Positives = 34/70 (48%)
Query: 491 KAEVDFDGRVVTRSYLEKQDFDQMLQEIQEVKTPEELETFMLKHGENIIDTLGAEVDRLE 550
K EVD +VV + ++ + +M++ Q ++ E + K E + L A ++ LE
Sbjct: 1065 KREVDVKEKVVVKEVVKVEKNLEMVKAAQALRLQMEEDAARRKQAEEAVAKLQARIEDLE 1124
Query: 551 KELKKRNPEV 560
+ + P+V
Sbjct: 1125 RAISSVEPKV 1134
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 30.4 bits (67), Expect = 4.5
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 148 EQLRKIRRRSPHEDTESFTVYLRSDVEAKSLEVWGSPEALAREKKLRKEAEIEYRERLFR 207
+QLR+ + E LR + + + + + L RE++LR+E ++ ++L R
Sbjct: 362 QQLRREQEEERREQQLRREQQLRREQQLRREQQLRREQQLRREQQLRREQQLRREQQLRR 421
Query: 208 NQKILREYRD 217
Q++ RE +
Sbjct: 422 EQQLRREQEE 431
>gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4
[Homo sapiens]
Length = 488
Score = 30.4 bits (67), Expect = 4.5
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 389 STNVILLEDTAAVLGVIIAATCMGLTSITGNPLYDSLGSLGVGTLLGMVSAFLIYTNTEA 448
STN L T++ LG + + + T +SL SL GTL G+ A + N A
Sbjct: 275 STNANPLSTTSSALGALTSPVAASTPNSTAGAAMNSLTSL--GTLQGLAGATVGLNNINA 332
Query: 449 LLG 451
L G
Sbjct: 333 LAG 335
>gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3
[Homo sapiens]
Length = 508
Score = 30.4 bits (67), Expect = 4.5
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 389 STNVILLEDTAAVLGVIIAATCMGLTSITGNPLYDSLGSLGVGTLLGMVSAFLIYTNTEA 448
STN L T++ LG + + + T +SL SL GTL G+ A + N A
Sbjct: 299 STNANPLSTTSSALGALTSPVAASTPNSTAGAAMNSLTSL--GTLQGLAGATVGLNNINA 356
Query: 449 LLG 451
L G
Sbjct: 357 LAG 359
>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
Length = 2230
Score = 30.0 bits (66), Expect = 5.9
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 460 QRLTELLENDPSVRAIHDVKATDLGLGKVRFKAEVDFDGRVVTRSYLEKQDFDQMLQEIQ 519
Q++ EL + +H V+ +L + +A DGR LE+ ++ +
Sbjct: 1854 QKIKELDSCLVRQKEVHRVEMEELTSKYEKLQALQQMDGRNKPTELLEENTEEKSKSHLV 1913
Query: 520 EVKTPEELET------FMLKHGENIIDTLGAEVDRLEKELKKRNPEVRHVDLEIL 568
+ K +E F L E LG E+ RL+K+L+ E +LEIL
Sbjct: 1914 QPKLLSNMEAQHNDLEFKLAGAEREKQKLGKEIVRLQKDLRMLRKE-HQQELEIL 1967
>gi|33620759 LRP2 binding protein [Homo sapiens]
Length = 347
Score = 30.0 bits (66), Expect = 5.9
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 505 YLEKQDFDQMLQEIQEVKTPEELETFML--KHGENIIDTLGAE--VDRLEKELKKRNPEV 560
Y E+ +++ L++ +E+K + T+ L + + + TL AE VD ++K L P+
Sbjct: 69 YFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTLDAEKGVDYMKKILDSPCPKA 128
Query: 561 RHV 563
RH+
Sbjct: 129 RHL 131
>gi|21450665 coiled-coil domain containing 138 [Homo sapiens]
Length = 665
Score = 30.0 bits (66), Expect = 5.9
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 500 VVTRSYLEKQDFDQMLQEIQEVKTPEELETFMLKHGENIIDTLGAEVDRLEKELKKRNPE 559
V+TR + K+ D ++ + EV + ET L+ + + L D L+K+L + + E
Sbjct: 236 VLTRFQIIKEQHDAEVEHLTEVLKEKNKETKRLRSSFDALKELN---DTLKKQLNEASEE 292
Query: 560 VRHVDLE 566
R +D++
Sbjct: 293 NRKIDIQ 299
>gi|40255180 coiled-coil domain containing 83 [Homo sapiens]
Length = 444
Score = 30.0 bits (66), Expect = 5.9
Identities = 34/141 (24%), Positives = 52/141 (36%), Gaps = 30/141 (21%)
Query: 90 ETAEGIGTELKAPLKQ--------------EPLQVRVKAVLKKREYGSKYTQNNFITGVR 135
+T +G E+K P + E ++K + KK + KY + N
Sbjct: 11 DTHDGPPKEIKLPTSEALLDYQCQIKEDAVEQFMFQIKTLRKKNQ---KYHERNSR---- 63
Query: 136 AINEFCLKSSDLEQLRKIRRRSPHEDTESFTVYLRSDVEAKSLEVWGSPEALAREKKLR- 194
LK + +R + + E E V R DVE E W +EK LR
Sbjct: 64 ------LKEEQIWHIRHLLKELSEEKAEGLPVVTREDVEEAMKEKWKFER--DQEKNLRD 115
Query: 195 KEAEIEYRERLFRNQKILREY 215
+I E+LF + +EY
Sbjct: 116 MRMQISNAEKLFLEKLSEKEY 136
>gi|87578396 microtubule-associated protein 2 isoform 1 [Homo sapiens]
Length = 1827
Score = 29.6 bits (65), Expect = 7.8
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 127 QNNFITGVRAINE------FCLKSSDLEQLRKIRRRSPHEDTESFTVYLRSDVEAKSLEV 180
+++FIT V+ + ++ + LEQ RR SPH D E F V ++ +A+ +
Sbjct: 1288 EDDFITVVQTTTDEGESGSHSVRFAALEQPEVERRPSPH-DEEEFEVEEAAEAQAEPKD- 1345
Query: 181 WGSPEALAREKKLRKEAEIEYRERLFRNQK 210
GSPEA A ++ + A EY+ + + K
Sbjct: 1346 -GSPEAPASPER-EEVALSEYKTETYDDYK 1373
>gi|33946313 ninein isoform 4 [Homo sapiens]
Length = 2096
Score = 29.6 bits (65), Expect = 7.8
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 105 QEPLQVRVKAVLKKREYGSKYTQNNFITGVRAINEFCLKSSDLEQLRKIRRRSPHEDTES 164
++ L V + K +E + +N T + I++ + ++L+ + + + HE T
Sbjct: 643 EKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEAT-- 700
Query: 165 FTVYLRSDVEAKSLEVWGSPEALAREKKLRKEAEIEYRERLFRNQKILREYRDFL 219
R + E K L+V E ++KLR + E+E + RL + Q R+ L
Sbjct: 701 ----CRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGL 751
>gi|33946321 ninein isoform 5 [Homo sapiens]
Length = 2090
Score = 29.6 bits (65), Expect = 7.8
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 105 QEPLQVRVKAVLKKREYGSKYTQNNFITGVRAINEFCLKSSDLEQLRKIRRRSPHEDTES 164
++ L V + K +E + +N T + I++ + ++L+ + + + HE T
Sbjct: 637 EKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEAT-- 694
Query: 165 FTVYLRSDVEAKSLEVWGSPEALAREKKLRKEAEIEYRERLFRNQKILREYRDFL 219
R + E K L+V E ++KLR + E+E + RL + Q R+ L
Sbjct: 695 ----CRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGL 745
>gi|148536871 ninein isoform 1 [Homo sapiens]
Length = 2046
Score = 29.6 bits (65), Expect = 7.8
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 105 QEPLQVRVKAVLKKREYGSKYTQNNFITGVRAINEFCLKSSDLEQLRKIRRRSPHEDTES 164
++ L V + K +E + +N T + I++ + ++L+ + + + HE T
Sbjct: 637 EKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEAT-- 694
Query: 165 FTVYLRSDVEAKSLEVWGSPEALAREKKLRKEAEIEYRERLFRNQKILREYRDFL 219
R + E K L+V E ++KLR + E+E + RL + Q R+ L
Sbjct: 695 ----CRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGL 745
>gi|148536869 ninein isoform 2 [Homo sapiens]
Length = 2133
Score = 29.6 bits (65), Expect = 7.8
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 105 QEPLQVRVKAVLKKREYGSKYTQNNFITGVRAINEFCLKSSDLEQLRKIRRRSPHEDTES 164
++ L V + K +E + +N T + I++ + ++L+ + + + HE T
Sbjct: 637 EKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQAAVLKEAHHEAT-- 694
Query: 165 FTVYLRSDVEAKSLEVWGSPEALAREKKLRKEAEIEYRERLFRNQKILREYRDFL 219
R + E K L+V E ++KLR + E+E + RL + Q R+ L
Sbjct: 695 ----CRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFEREREGL 745
>gi|88196790 coiled-coil domain containing 88 [Homo sapiens]
Length = 1476
Score = 29.6 bits (65), Expect = 7.8
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 169 LRSDVEAKSLEVWGSPEALAREKKLRKEAEIEYRERLFRNQKILREYRDFL 219
LRS E ++ ++ +AL+RE + E +E R+ L R Q REY D L
Sbjct: 1234 LRSAQEEENRQLLAEVQALSRENRELLERSLESRDHLHREQ---REYLDQL 1281
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,774,658
Number of Sequences: 37866
Number of extensions: 889788
Number of successful extensions: 2831
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2785
Number of HSP's gapped (non-prelim): 66
length of query: 568
length of database: 18,247,518
effective HSP length: 108
effective length of query: 460
effective length of database: 14,157,990
effective search space: 6512675400
effective search space used: 6512675400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.