Guide to the Human Genome
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Name: TNNI1 Sequence: fasta or formatted (187aa) NCBI GI: 56682969
Description:

troponin I, skeletal, slow

Referenced in:

Muscle

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         15           2
 C cysteine            1.6          3           1
 D aspartate           5.3         10           1
 E glutamate          11.8         22           2
 F phenylalanine       1.1          2           1
 G glycine             3.2          6           1
 H histidine           2.1          4           1
 I isoleucine          2.1          4           1
 K lysine             12.8         24           2
 L leucine            11.8         22           3
 M methionine          4.3          8           1
 N asparagine          1.6          3           1
 P proline             3.7          7           2
 Q glutamine           2.1          4           1
 R arginine           10.2         19           2
 S serine              5.9         11           1
 T threonine           3.2          6           1
 V valine              7.0         13           2
 W tryptophan          1.1          2           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   troponin I, skeletal, slow 
TNNI3                 0.560   troponin I, cardiac 
TNNI2                 0.534   fast-twitch skeletal muscle troponin I isoform 1 [Hom...
TNNI2                 0.534   fast-twitch skeletal muscle troponin I isoform 1 [H...
TNNI2                 0.531   fast-twitch skeletal muscle troponin I isoform 2 [H...
C6orf97               0.041   hypothetical protein LOC80129 
SMC5                  0.035   SMC5 protein 
TNNT2                 0.032   troponin T type 2, cardiac isoform 3 
TNNT2                 0.032   troponin T type 2, cardiac isoform 1 
HOOK2                 0.032   hook homolog 2 isoform 2 
HOOK2                 0.032   hook homolog 2 isoform 1 
TNNT2                 0.026   troponin T type 2, cardiac isoform 4 
EEA1                  0.026   early endosome antigen 1, 162kD 
MYH2                  0.026   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.026   myosin, heavy chain 2, skeletal muscle, adult [Homo...
CCDC19                0.026   nasopharyngeal epithelium specific protein 1 
GCC2                  0.023   GRIP and coiled-coil domain-containing 2 
LMO7                  0.023   LIM domain only 7 isoform 1 
TNNT2                 0.023   troponin T type 2, cardiac isoform 2 
LMO7                  0.023   LIM domain only 7 isoform 2 
LOC400986             0.023   PREDICTED: protein immuno-reactive with anti-PTH po...
ANKRD36               0.023   PREDICTED: ankyrin repeat domain 36 
ANKRD36B              0.023   ankyrin repeat domain 36B 
MYH13                 0.020   myosin, heavy polypeptide 13, skeletal muscle [Homo...
EVI5                  0.020   ecotropic viral integration site 5 
CCDC157               0.020   coiled-coil domain containing 157 
C9orf117              0.020   hypothetical protein LOC286207 
TNNT1                 0.020   troponin T1, skeletal, slow isoform c 
TNNT1                 0.020   troponin T1, skeletal, slow isoform b 
MYH1                  0.020   myosin, heavy chain 1, skeletal muscle, adult [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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