Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TNNI3 Sequence: fasta or formatted (210aa) NCBI GI: 151101270
Description:

troponin I, cardiac

Referenced in:

Muscle

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         24           2
 C cysteine            1.0          2           1
 D aspartate           6.2         13           1
 E glutamate          10.0         21           2
 F phenylalanine       1.9          4           1
 G glycine             4.8         10           1
 H histidine           1.4          3           1
 I isoleucine          4.3          9           1
 K lysine             11.0         23           3
 L leucine            10.5         22           3
 M methionine          1.9          4           2
 N asparagine          1.9          4           1
 P proline             3.3          7           1
 Q glutamine           4.3          9           1
 R arginine           11.9         25           3
 S serine              5.7         12           2
 T threonine           3.8          8           1
 V valine              2.9          6           1
 W tryptophan          0.5          1           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   troponin I, cardiac 
TNNI1                 0.500   troponin I, skeletal, slow 
TNNI2                 0.469   fast-twitch skeletal muscle troponin I isoform 2 [H...
TNNI2                 0.466   fast-twitch skeletal muscle troponin I isoform 1 [Hom...
TNNI2                 0.466   fast-twitch skeletal muscle troponin I isoform 1 [H...
TNNT1                 0.042   troponin T1, skeletal, slow isoform c 
TNNT1                 0.042   troponin T1, skeletal, slow isoform b 
SMC5                  0.031   SMC5 protein 
MYH2                  0.029   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.029   myosin, heavy chain 2, skeletal muscle, adult [Homo...
CCDC57                0.029   coiled-coil domain containing 57 
MYH8                  0.029   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH13                 0.026   myosin, heavy polypeptide 13, skeletal muscle [Homo...
CCDC88A               0.026   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.026   coiled-coil domain containing 88A isoform 1 
CCDC19                0.026   nasopharyngeal epithelium specific protein 1 
TXLNB                 0.023   taxilin beta 
TNNT3                 0.023   troponin T3, skeletal, fast isoform 2 
TNNT3                 0.023   troponin T3, skeletal, fast isoform 1 
TNNT3                 0.023   troponin T3, skeletal, fast isoform 4 
CCDC46                0.023   coiled-coil domain containing 46 isoform a 
MYH14                 0.021   myosin, heavy chain 14 isoform 1 
MYH14                 0.021   myosin, heavy chain 14 isoform 2 
MYH14                 0.021   myosin, heavy chain 14 isoform 3 
MYH1                  0.021   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH7B                 0.021   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
INCENP                0.021   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.021   inner centromere protein antigens 135/155kDa isofor...
MYH9                  0.021   myosin, heavy polypeptide 9, non-muscle 
TNNT3                 0.021   troponin T3, skeletal, fast isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press