Guide to the Human Genome
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Name: TNNT1 Sequence: fasta or formatted (251aa) NCBI GI: 187173292
Description:

troponin T1, skeletal, slow isoform c

Referenced in:

Muscle

Other entries for this name:
alt prot [278aa] troponin T1, skeletal, slow isoform a
alt prot [262aa] troponin T1, skeletal, slow isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         15           2
 C cysteine            0.0          0           0
 D aspartate           4.8         12           2
 E glutamate          19.9         50           8
 F phenylalanine       2.4          6           1
 G glycine             4.8         12           2
 H histidine           2.0          5           1
 I isoleucine          4.0         10           1
 K lysine             12.7         32           4
 L leucine             7.2         18           2
 M methionine          2.8          7           1
 N asparagine          1.2          3           1
 P proline             4.0         10           2
 Q glutamine           6.0         15           2
 R arginine           10.8         27           3
 S serine              3.2          8           1
 T threonine           1.6          4           1
 V valine              4.0         10           2
 W tryptophan          0.8          2           1
 Y tyrosine            2.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   troponin T1, skeletal, slow isoform c 
TNNT1                 0.981   troponin T1, skeletal, slow isoform b 
TNNT1                 0.960   troponin T1, skeletal, slow isoform a 
TNNT3                 0.633   troponin T3, skeletal, fast isoform 4 
TNNT3                 0.624   troponin T3, skeletal, fast isoform 1 
TNNT3                 0.622   troponin T3, skeletal, fast isoform 2 
TNNT2                 0.618   troponin T type 2, cardiac isoform 3 
TNNT2                 0.618   troponin T type 2, cardiac isoform 1 
TNNT3                 0.618   troponin T3, skeletal, fast isoform 3 
TNNT2                 0.612   troponin T type 2, cardiac isoform 4 
TNNT2                 0.608   troponin T type 2, cardiac isoform 2 
ITSN1                 0.097   intersectin 1 isoform ITSN-s 
ITSN1                 0.097   intersectin 1 isoform ITSN-l 
TCHH                  0.089   trichohyalin 
LOC100133758          0.074   PREDICTED: hypothetical protein, partial 
MYO6                  0.074   myosin VI 
MAP4K4                0.074   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.074   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.072   mitogen-activated protein kinase kinase kinase kinas...
LOC100133599          0.072   PREDICTED: hypothetical protein 
CALD1                 0.070   caldesmon 1 isoform 1 
LOC645202             0.070   PREDICTED: hypothetical protein LOC645202 
ENAH                  0.068   enabled homolog isoform a 
ENAH                  0.068   enabled homolog isoform b 
GIGYF2                0.068   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.068   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.068   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.068   GRB10 interacting GYF protein 2 isoform b 
RBM25                 0.065   RNA binding motif protein 25 
EIF3A                 0.065   eukaryotic translation initiation factor 3, subunit 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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