Guide to the Human Genome
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Name: SMC5 Sequence: fasta or formatted (1101aa) NCBI GI: 155722985
Description:

SMC5 protein

Referenced in:

DNases, Recombination, and DNA Repair

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         45           2
 C cysteine            2.0         22           2
 D aspartate           4.3         47           2
 E glutamate          11.4        126           4
 F phenylalanine       3.3         36           2
 G glycine             3.0         33           2
 H histidine           2.0         22           2
 I isoleucine          5.7         63           2
 K lysine              9.6        106           3
 L leucine             9.6        106           2
 M methionine          2.4         26           1
 N asparagine          5.4         60           2
 P proline             3.7         41           2
 Q glutamine           6.1         67           2
 R arginine            7.3         80           5
 S serine              5.8         64           2
 T threonine           5.3         58           2
 V valine              6.1         67           2
 W tryptophan          0.5          5           1
 Y tyrosine            2.5         27           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SMC5 protein 
SMC6                  0.055   SMC6 protein 
SMC6                  0.055   SMC6 protein 
CCDC88A               0.031   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.030   coiled-coil domain containing 88A isoform 1 
MYH9                  0.029   myosin, heavy polypeptide 9, non-muscle 
MYH10                 0.029   myosin, heavy polypeptide 10, non-muscle 
CENPE                 0.028   centromere protein E 
EEA1                  0.027   early endosome antigen 1, 162kD 
SMC2                  0.027   structural maintenance of chromosomes 2 
SMC2                  0.027   structural maintenance of chromosomes 2 
SMC2                  0.027   structural maintenance of chromosomes 2 
TPR                   0.025   nuclear pore complex-associated protein TPR 
GOLGA4                0.025   golgi autoantigen, golgin subfamily a, 4 
LOC283685             0.025   PREDICTED: golgi autoantigen, golgin subfamily a-li...
KTN1                  0.025   kinectin 1 isoform a 
KTN1                  0.025   kinectin 1 isoform a 
FHAD1                 0.024   forkhead-associated (FHA) phosphopeptide binding do...
NUMA1                 0.024   nuclear mitotic apparatus protein 1 
GCC2                  0.023   GRIP and coiled-coil domain-containing 2 
MYH11                 0.023   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.023   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
CCDC147               0.023   coiled-coil domain containing 147 
CCDC18                0.023   sarcoma antigen NY-SAR-41 
CENPF                 0.023   centromere protein F 
KTN1                  0.022   kinectin 1 isoform c 
DSP                   0.022   desmoplakin isoform I 
LOC440243             0.022   PREDICTED: Putative golgin subfamily A member 6-lik...
CGNL1                 0.022   cingulin-like 1 
KTN1                  0.021   kinectin 1 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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