Guide to the Human Genome
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Name: TNNI2 Sequence: fasta or formatted (182aa) NCBI GI: 4507621
Description:

fast-twitch skeletal muscle troponin I isoform 1

Referenced in:

Muscle

Other entries for this name:
alt mRNA [182aa] fast-twitch skeletal muscle troponin I isoform 1
alt prot [182aa] fast-twitch skeletal muscle troponin I isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         13           2
 C cysteine            1.6          3           1
 D aspartate           6.0         11           1
 E glutamate          13.7         25           3
 F phenylalanine       1.6          3           1
 G glycine             3.8          7           1
 H histidine           2.7          5           1
 I isoleucine          2.7          5           1
 K lysine             12.6         23           2
 L leucine             9.3         17           2
 M methionine          5.5         10           1
 N asparagine          2.7          5           1
 P proline             2.7          5           2
 Q glutamine           4.4          8           1
 R arginine            9.3         17           2
 S serine              5.5         10           1
 T threonine           2.2          4           1
 V valine              4.4          8           1
 W tryptophan          0.5          1           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fast-twitch skeletal muscle troponin I isoform 1 [Hom... 
TNNI2                 1.000   fast-twitch skeletal muscle troponin I isoform 1 [H...
TNNI2                 0.973   fast-twitch skeletal muscle troponin I isoform 2 [H...
TNNI1                 0.543   troponin I, skeletal, slow 
TNNI3                 0.531   troponin I, cardiac 
MYH6                  0.056   myosin heavy chain 6 
KTN1                  0.050   kinectin 1 isoform a 
KTN1                  0.050   kinectin 1 isoform c 
KTN1                  0.050   kinectin 1 isoform a 
HOOK1                 0.050   hook homolog 1 
PPFIA1                0.045   PTPRF interacting protein alpha 1 isoform a 
PPFIA1                0.045   PTPRF interacting protein alpha 1 isoform b 
MYH7                  0.042   myosin, heavy chain 7, cardiac muscle, beta 
MYH1                  0.042   myosin, heavy chain 1, skeletal muscle, adult [Homo...
PPFIA2                0.042   PTPRF interacting protein alpha 2 
KIF3A                 0.042   kinesin family member 3A 
LOC653073             0.039   PREDICTED: Golgin subfamily A member 8-like protein...
MYH2                  0.036   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.036   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH4                  0.036   myosin, heavy polypeptide 4, skeletal muscle 
CCDC19                0.036   nasopharyngeal epithelium specific protein 1 
LOC283685             0.036   PREDICTED: golgi autoantigen, golgin subfamily a-li...
MYH10                 0.036   myosin, heavy polypeptide 10, non-muscle 
CROCC                 0.036   ciliary rootlet coiled-coil 
TNNT2                 0.033   troponin T type 2, cardiac isoform 2 
MYH14                 0.033   myosin, heavy chain 14 isoform 1 
MYH14                 0.033   myosin, heavy chain 14 isoform 2 
MYH14                 0.033   myosin, heavy chain 14 isoform 3 
RNF20                 0.033   ring finger protein 20 
FLJ44817              0.033   similar to pleckstrin homology domain protein (5V32...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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