Guide to the Human Genome
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Name: C6orf97 Sequence: fasta or formatted (715aa) NCBI GI: 38570058
Description:

hypothetical protein LOC80129

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         55           2
 C cysteine            1.5         11           1
 D aspartate           4.3         31           1
 E glutamate          13.7         98           3
 F phenylalanine       1.7         12           1
 G glycine             2.0         14           2
 H histidine           2.8         20           2
 I isoleucine          3.2         23           2
 K lysine             10.5         75           3
 L leucine            13.3         95           2
 M methionine          2.5         18           1
 N asparagine          4.1         29           2
 P proline             0.8          6           1
 Q glutamine           6.7         48           2
 R arginine            6.3         45           1
 S serine              7.4         53           3
 T threonine           5.2         37           2
 V valine              5.3         38           2
 W tryptophan          0.1          1           1
 Y tyrosine            0.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC80129 
MYH9                  0.068   myosin, heavy polypeptide 9, non-muscle 
MYH11                 0.065   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.065   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.065   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.065   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH10                 0.063   myosin, heavy polypeptide 10, non-muscle 
CCDC88A               0.060   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.060   coiled-coil domain containing 88A isoform 1 
CCDC147               0.060   coiled-coil domain containing 147 
EEA1                  0.059   early endosome antigen 1, 162kD 
ERC2                  0.058   cytomatrix protein p110 
MYH6                  0.058   myosin heavy chain 6 
ERC1                  0.057   RAB6-interacting protein 2 isoform epsilon 
MYH14                 0.057   myosin, heavy chain 14 isoform 1 
MYH14                 0.057   myosin, heavy chain 14 isoform 2 
MYH14                 0.057   myosin, heavy chain 14 isoform 3 
UACA                  0.056   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.056   uveal autoantigen with coiled-coil domains and ankyr...
MYH7                  0.056   myosin, heavy chain 7, cardiac muscle, beta 
CLIP1                 0.056   restin isoform b 
CLIP1                 0.056   restin isoform a 
CGNL1                 0.056   cingulin-like 1 
CROCC                 0.055   ciliary rootlet coiled-coil 
RAI14                 0.055   retinoic acid induced 14 isoform d 
RAI14                 0.055   retinoic acid induced 14 isoform c 
RAI14                 0.055   retinoic acid induced 14 isoform b 
RAI14                 0.055   retinoic acid induced 14 isoform a 
RAI14                 0.055   retinoic acid induced 14 isoform a 
RAI14                 0.055   retinoic acid induced 14 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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