Guide to the Human Genome
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Name: LOC400986 Sequence: fasta or formatted (868aa) NCBI GI: 239747793
Description:

PREDICTED: protein immuno-reactive with anti-PTH polyclonal antibodies

Referenced in:

Ankyrin Family

Other entries for this name:
alt prot [1430aa] PREDICTED: protein immuno-reactive with anti-PTH polyclonal antib...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         49           2
 C cysteine            2.4         21           2
 D aspartate           5.6         49           2
 E glutamate          10.7         93           2
 F phenylalanine       1.5         13           1
 G glycine             3.0         26           2
 H histidine           2.3         20           1
 I isoleucine          4.6         40           2
 K lysine             12.4        108           3
 L leucine             9.8         85           3
 M methionine          2.1         18           2
 N asparagine          4.8         42           2
 P proline             1.7         15           1
 Q glutamine           8.2         71           3
 R arginine            5.3         46           2
 S serine              7.9         69           2
 T threonine           5.5         48           2
 V valine              4.7         41           1
 W tryptophan          0.2          2           1
 Y tyrosine            1.4         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: protein immuno-reactive with anti-PTH po... 
LOC400986             0.977   PREDICTED: protein immuno-reactive with anti-PTH po...
ANKRD36B              0.947   ankyrin repeat domain 36B 
ANKRD36               0.885   PREDICTED: ankyrin repeat domain 36 
LOC730658             0.480   PREDICTED: similar to UPF0634 protein KIAA1641 [Hom...
ANKRD26               0.326   ankyrin repeat domain 26 
ANKRD62               0.312   PREDICTED: ankyrin repeat domain 62 
ANKRD62               0.312   PREDICTED: ankyrin repeat domain 62 isoform 4 [Homo...
ANKRD62               0.310   PREDICTED: ankyrin repeat domain 62 isoform 1 [Homo...
CCDC144A              0.211   coiled-coil domain containing 144A 
ANKRD30A              0.194   ankyrin repeat domain 30A 
ANKRD30B              0.173   ankyrin repeat domain 30B 
ANKRD36               0.153   PREDICTED: ankyrin repeat domain 36 
LOC100133923          0.140   PREDICTED: similar to UPF0634 protein C 
LOC100289777          0.138   PREDICTED: hypothetical protein XP_002348316 
ANKRD20A5             0.135   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD20A5             0.135   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD20A3             0.118   ankyrin repeat domain 20 family, member A3 
ANKRD20A2             0.118   ankyrin repeat domain 20 family, member A2 
ANKRD20A1             0.118   ankyrin repeat domain 20 family, member A1 
ANKRD20A4             0.117   ankyrin repeat domain 20 family, member A4 
LOC100133939          0.114   PREDICTED: similar to UPF0634 protein KIAA1641 [Hom...
ANKRD18B              0.111   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.111   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.111   PREDICTED: ankyrin repeat domain 18B 
ANKRD18A              0.105   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.105   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.105   PREDICTED: ankyrin repeat domain 18A 
LOC100132733          0.060   PREDICTED: similar to FLJ00310 protein 
LOC100293353          0.059   PREDICTED: similar to Coiled-coil domain-containing...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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