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Search of human proteins with 56117846
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|56117846 synovial sarcoma translocation, chromosome 18
isoform 1 [Homo sapiens]
(418 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|56117846 synovial sarcoma translocation, chromosome 18 isofor... 921 0.0
gi|56117844 synovial sarcoma translocation, chromosome 18 isofor... 825 0.0
gi|39777614 SS18-like protein 1 [Homo sapiens] 485 e-137
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 112 5e-25
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 98 2e-20
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 91 3e-18
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 88 2e-17
gi|10047104 synovial sarcoma translocation gene on chromosome 18... 83 5e-16
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 80 3e-15
gi|55750053 atrophin-1 [Homo sapiens] 74 3e-13
gi|55750041 atrophin-1 [Homo sapiens] 74 3e-13
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 72 7e-13
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 72 7e-13
gi|119943102 CREB binding protein isoform b [Homo sapiens] 70 5e-12
gi|119943104 CREB binding protein isoform a [Homo sapiens] 70 5e-12
gi|50345997 E1A binding protein p300 [Homo sapiens] 69 6e-12
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 67 2e-11
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 67 2e-11
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 67 2e-11
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 67 2e-11
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 67 2e-11
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 67 2e-11
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 67 2e-11
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 66 7e-11
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 66 7e-11
gi|151301053 RNA binding motif protein 33 [Homo sapiens] 66 7e-11
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma... 65 1e-10
gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens] 65 1e-10
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 63 6e-10
gi|158966674 proline-rich protein HaeIII subfamily 2 [Homo sapiens] 63 6e-10
>gi|56117846 synovial sarcoma translocation, chromosome 18 isoform 1
[Homo sapiens]
Length = 418
Score = 921 bits (2380), Expect = 0.0
Identities = 418/418 (100%), Positives = 418/418 (100%)
Query: 1 MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY 60
MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY
Sbjct: 1 MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY 60
Query: 61 LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ 120
LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ
Sbjct: 61 LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ 120
Query: 121 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT 180
NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
Sbjct: 121 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT 180
Query: 181 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ 240
MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ
Sbjct: 181 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ 240
Query: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGY 300
GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGY
Sbjct: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGY 300
Query: 301 QQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG 360
QQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG
Sbjct: 301 QQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG 360
Query: 361 QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 418
QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ
Sbjct: 361 QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 418
>gi|56117844 synovial sarcoma translocation, chromosome 18 isoform 2
[Homo sapiens]
Length = 387
Score = 825 bits (2132), Expect = 0.0
Identities = 384/418 (91%), Positives = 384/418 (91%), Gaps = 31/418 (7%)
Query: 1 MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY 60
MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY
Sbjct: 1 MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY 60
Query: 61 LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ 120
LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ
Sbjct: 61 LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ 120
Query: 121 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT 180
NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT
Sbjct: 121 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT 180
Query: 181 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ 240
MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ
Sbjct: 181 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ 240
Query: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGY 300
GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMN
Sbjct: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMN------------- 287
Query: 301 QQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG 360
Q YY GNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG
Sbjct: 288 ------------------QQYYPDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPG 329
Query: 361 QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 418
QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ
Sbjct: 330 QQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 387
>gi|39777614 SS18-like protein 1 [Homo sapiens]
Length = 396
Score = 485 bits (1248), Expect = e-137
Identities = 251/419 (59%), Positives = 293/419 (69%), Gaps = 24/419 (5%)
Query: 1 MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY 60
MSVAFA+ R RGKGE+T IQKMLD+N+HLIQCI++ Q+KGKT+EC+QYQQ+LH NLVY
Sbjct: 1 MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILEYQSKGKTAECTQYQQILHRNLVY 60
Query: 61 LATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQ 120
LATIADSNQNMQSLLPAPPTQNM +GPG + QSG S SD + G PP+ +Q
Sbjct: 61 LATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGLHSQGSLSDAISTGLPPSSLLQ 120
Query: 121 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMT 180
Q+ GP+H+ MQ PN L T+ S++ P GY+H+ P+SQ +P+Q Q T
Sbjct: 121 GQIGN---GPSHVSMQQTAPNTLPTTSMSISGP--------GYSHAGPASQGVPMQGQGT 169
Query: 181 MSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ 240
+GNY R N++MQ N MM QQ + Y+ QGG QHYQGQ + MMGQ +Q
Sbjct: 170 ------IGNYVSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQS-SIAMMGQGSQ 222
Query: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGY 300
G+ MMGQR + PYRP QQG QQY GQE+YYG+QYSH QG E M QQYYPDGH DY Y
Sbjct: 223 GSSMMGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSH-SQGAAEPMGQQYYPDGHGDYAY 281
Query: 301 QQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAY-QGPPPQQGYPPQQQQYPGQQGYP 359
QQ SY EQ YDR +E+S+QHYYEGGNSQY QQQ Y QG QQ Y QQQYP QQ YP
Sbjct: 282 QQSSYTEQSYDRSFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTY--SQQQYPSQQSYP 339
Query: 360 GQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 418
GQQQGYG +QG P QYP Y QGQGQQYG YR Q P QQRPYGY+QGQYGNYQQ
Sbjct: 340 GQQQGYGSAQGAPS-QYPGYQQGQGQQYGSYRAPQTA-PSAQQQRPYGYEQGQYGNYQQ 396
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 112 bits (281), Expect = 5e-25
Identities = 117/367 (31%), Positives = 134/367 (36%), Gaps = 47/367 (12%)
Query: 76 PAPPTQNMPMGP---GGMNQSGPPPPP--------RSHNMPSDGMVGGGPPAPHMQNQMN 124
P+PP + P GP GG GPPPPP + N P G P P Q +
Sbjct: 51 PSPPGK--PQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKS 108
Query: 125 GQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGS--MGGYNHSVPSSQSMPV------Q 176
P P QGP P N P G GG P P
Sbjct: 109 RSPRSPPGKP-QGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGD 167
Query: 177 NQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG 236
N+ S+ P GP P QP QGP PP + P GG QG PP G
Sbjct: 168 NKSRSSRSPPGKPQGPPPQGGNQP-QGP---PPPPGKPQGPPPQGGNKPQGPPPPGKPQG 223
Query: 237 QVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHN 296
QG++ + PP +P QGPP Q Q PP+G N+ P G
Sbjct: 224 PPPQGDNKSQSARSPPGKP--QGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK---PQGPP 278
Query: 297 DYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQ----QGYPPQQQQY 352
G Q P+ G S +G Q G Q QGPPP QG PPQ
Sbjct: 279 PPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQP---QGPPPPPGKPQGPPPQGGNK 335
Query: 353 PGQQGYPGQQQGYGPSQGGPGPQY----PNYPQGQGQQYG----GYRPTQPGPPQPPQQR 404
P PG+ QG P QGG + P PQG QQ G G P G PQ PQ
Sbjct: 336 PQGPPPPGKPQG-PPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAP 394
Query: 405 PYGYDQG 411
P G QG
Sbjct: 395 PAGQPQG 401
Score = 82.0 bits (201), Expect = 9e-16
Identities = 95/336 (28%), Positives = 114/336 (33%), Gaps = 88/336 (26%)
Query: 68 NQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQM 127
N++ S P Q P G Q PPPP G P P Q Q
Sbjct: 168 NKSRSSRSPPGKPQGPPPQGGNQPQGPPPPP-------------GKPQGPPPQGGNKPQG 214
Query: 128 PGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPM 187
P P P QGP P N + S+ + P G+P
Sbjct: 215 PPPPGKP-QGPPPQGDNKSQSARSPP------------------------------GKPQ 243
Query: 188 GNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQ 247
GP P QP QGP PP + P GG QG PP G QG
Sbjct: 244 ---GPPPQGGNQP-QGP---PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRS 296
Query: 248 RQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPE 307
+ PP +P QGPP Q Q QGPP + P P
Sbjct: 297 SRSPPGKP--QGPPPQGGNQP-----------QGPPPPPGKPQGP-------------PP 330
Query: 308 QGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGP 367
QG ++P +G Q G + + + PP + PPQQ+ QG P
Sbjct: 331 QGGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQE--------GNNPQGPPP 382
Query: 368 SQGGPGPQYPNYPQGQGQQYGGYRPTQPG-PPQPPQ 402
GG PQ P P GQ G RP Q G P +PPQ
Sbjct: 383 PAGG-NPQQPQAPPA-GQPQGPPRPPQGGRPSRPPQ 416
Score = 80.1 bits (196), Expect = 3e-15
Identities = 83/281 (29%), Positives = 100/281 (35%), Gaps = 58/281 (20%)
Query: 170 SQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQG--------- 220
++ + + ++ G P G N P P Q PP Q N PQG
Sbjct: 20 NEDVSQEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQ 79
Query: 221 -----GGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQY 275
GG QG PP G QG+ R PP +P QGPP Q Q
Sbjct: 80 GPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRS-PPGKP--QGPPPQGGNQPQ------ 130
Query: 276 SHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYY-----------EG 324
G PP G Q P G N P QG ++ S+ +G
Sbjct: 131 ---GPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPPGKPQGPPPQG 187
Query: 325 GNSQYG--QQQDAYQGPPPQQGYPPQQQQYPGQ---------------QGYPGQQQGYGP 367
GN G QGPPPQ G PQ PG+ + PG+ QG P
Sbjct: 188 GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQG-PP 246
Query: 368 SQGGPGPQYPNYPQGQGQ---QYGGYRPTQPGPPQPPQQRP 405
QGG PQ P P G+ Q GG +P P PP PQ P
Sbjct: 247 PQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPP 287
Score = 45.4 bits (106), Expect = 9e-05
Identities = 39/118 (33%), Positives = 43/118 (36%), Gaps = 14/118 (11%)
Query: 292 PDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAY--QGPPPQQGYPPQQ 349
P G G +P P +P Q GGN G QGPPPQ G PQ
Sbjct: 36 PQGAPPQGGNKPQGPPSPPGKPQGPPPQ----GGNQPQGPPPPPGKPQGPPPQGGNKPQG 91
Query: 350 QQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYG 407
PG+ P Q S P P PQG Q G QP P PP +P G
Sbjct: 92 PPPPGKPQGPPPQGDKSRSPRSP----PGKPQGPPPQGGN----QPQGPPPPPGKPQG 141
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 97.8 bits (242), Expect = 2e-20
Identities = 101/335 (30%), Positives = 120/335 (35%), Gaps = 50/335 (14%)
Query: 76 PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
P+P N P GP PPP+ N P G P P Q + P P
Sbjct: 39 PSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKP- 97
Query: 136 QGPGPNQLNMTNSSMNMPSSSHGS--MGGYNHSVP----SSQSMPVQNQMTMSQGQPMGN 189
QGP P N P G GG P Q P Q + S P G
Sbjct: 98 QGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGDKSRSPRSPPGK 157
Query: 190 -YGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQR 248
GP P QP QGP PP + P GG+ QG PP G QG+
Sbjct: 158 PQGPPPQGGNQP-QGP---PPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSS- 212
Query: 249 QIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQ 308
Q PP +P QGPP Q Q QGPP + P P Q
Sbjct: 213 QSPPGKP--QGPPPQGGNQP-----------QGPPPPPGKPQGP-------------PPQ 246
Query: 309 GYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPS 368
G ++P +G +Q G + + + PP + PPQQ+ QG P
Sbjct: 247 GGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEG--------NNPQGPPPP 298
Query: 369 QGGPGPQYPNYPQGQGQQYGGYRPTQPG-PPQPPQ 402
GG PQ P P GQ G RP Q G P +PPQ
Sbjct: 299 AGG-NPQQPQAPPA-GQPQGPPRPPQGGRPSRPPQ 331
Score = 96.3 bits (238), Expect = 5e-20
Identities = 116/380 (30%), Positives = 132/380 (34%), Gaps = 89/380 (23%)
Query: 53 MLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGP---GGMNQSGPPPPPRSHNMPSDGM 109
+L L+ L++ + N+++ P GP GG GPPPPP
Sbjct: 5 LLSVALLALSSAQNLNEDVSQEESPSLIAGNPQGPSPQGGNKPQGPPPPP---------- 54
Query: 110 VGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPS 169
G P P Q Q P P P QGP P
Sbjct: 55 --GKPQGPPPQGGNKPQGPPPPGKP-QGPPP----------------------------- 82
Query: 170 SQSMPVQNQMTMSQGQPMGN-YGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQ 228
Q + S P G GP P QP QGP PP + P GG QG
Sbjct: 83 ------QGDKSRSPRSPPGKPQGPPPQGGNQP-QGP---PPPPGKPQGPPPQGGNRPQGP 132
Query: 229 QPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQ 288
PP G QG+ R PP +P QGPP Q Q G PP G Q
Sbjct: 133 PPPGKPQGPPPQGDKSRSPRS-PPGKP--QGPPPQGGNQPQ---------GPPPPPGKPQ 180
Query: 289 QYYPDG-HNDYGYQQPSYPE----QGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQ- 342
P G G P P+ QG S +G Q G Q QGPPP
Sbjct: 181 GPPPQGGKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQP---QGPPPPP 237
Query: 343 ---QGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQY----PNYPQGQGQQYG----GYR 391
QG PPQ P PG+ QG P+QGG Q P PQG QQ G G
Sbjct: 238 GKPQGPPPQGGNKPQGPPPPGKPQG-PPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPP 296
Query: 392 PTQPGPPQPPQQRPYGYDQG 411
P G PQ PQ P G QG
Sbjct: 297 PPAGGNPQQPQAPPAGQPQG 316
Score = 76.3 bits (186), Expect = 5e-14
Identities = 78/225 (34%), Positives = 88/225 (39%), Gaps = 34/225 (15%)
Query: 191 GPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQI 250
GP P +P QGP PP + P GG QG PP G QG+ R
Sbjct: 38 GPSPQGGNKP-QGP---PPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRS- 92
Query: 251 PPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGY 310
PP +P QGPP Q Q G PP G Q P G N P QG
Sbjct: 93 PPGKP--QGPPPQGGNQPQ---------GPPPPPGKPQGPPPQGGNRPQGPPPPGKPQG- 140
Query: 311 DRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQG 370
P D S+ S G+ Q GPPPQ G PQ P PG+ QG P QG
Sbjct: 141 PPPQGDKSR----SPRSPPGKPQ----GPPPQGGNQPQGPPPP-----PGKPQG-PPPQG 186
Query: 371 GP---GPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQ 412
G GP P PQG Q R +Q P +P P G +Q Q
Sbjct: 187 GKKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPPPQGGNQPQ 231
Score = 29.6 bits (65), Expect = 5.3
Identities = 23/73 (31%), Positives = 23/73 (31%), Gaps = 13/73 (17%)
Query: 65 ADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMN 124
A QS P P G N GPPPP GG P P Q
Sbjct: 265 AQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPP-----------AGGNPQQP--QAPPA 311
Query: 125 GQMPGPNHMPMQG 137
GQ GP P G
Sbjct: 312 GQPQGPPRPPQGG 324
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 90.5 bits (223), Expect = 3e-18
Identities = 108/354 (30%), Positives = 129/354 (36%), Gaps = 78/354 (22%)
Query: 79 PTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGP 138
P+Q MPM M Q GPP P PP P Q QM Q P P H GP
Sbjct: 606 PSQQMPMN---MAQMGPPGPQGQFR----------PPGP--QGQMGPQGP-PLHQGGGGP 649
Query: 139 ----GPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQP--MGNYGP 192
GP + P HG G H P P QG P G+ GP
Sbjct: 650 QGFMGPQGPQGPPQGLPRPQDMHGPQGMQRHPGPHGPLGP--------QGPPGPQGSSGP 701
Query: 193 RPNMSMQPNQGPMMH---QQPPSQQYNM-PQG--GGQHYQGQQPPMGMMGQVNQGNHMMG 246
+ +M Q GP H Q PP Q ++ PQG G Q QG P GM G
Sbjct: 702 QGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGPPGTQGMQGPPGPRGMQG---------- 751
Query: 247 QRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYP 306
PP+ QG P G + G QGP G+N + Q P+
Sbjct: 752 ----PPHPHGIQGGP----GSQGIQGPV----SQGPLMGLNPRGMQGPPGPRENQGPAPQ 799
Query: 307 EQGYDRPYEDSSQHYYEGGNSQYGQQQ-------DAYQGPPPQQGY--PPQQQQYPGQQG 357
P ++ + GG +G Q+ QGPPPQ PPQ+ + P
Sbjct: 800 GMIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQEIRGMQGPPPQGSMLGPPQELRGP---- 855
Query: 358 YPGQQQGYGPSQGGPGP------QYPNYPQGQGQQYGGYRPTQPGPPQPPQQRP 405
PG Q GP QG GP Q P PQGQ G P+Q P Q+ P
Sbjct: 856 -PGSQSQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIPFQQQKTP 908
Score = 85.1 bits (209), Expect = 1e-16
Identities = 116/415 (27%), Positives = 147/415 (35%), Gaps = 89/415 (21%)
Query: 75 LPAPPTQNMPMG----PGGMNQSGP--PPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMP 128
LP P + P G PG GP PP P+ + P M GPP P G P
Sbjct: 665 LPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGP-P 723
Query: 129 GPN-HMPMQGPGPNQLNMTNS----SMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQ 183
GP H+ QGP P M M P HG GG P SQ + Q +SQ
Sbjct: 724 GPQGHLGPQGP-PGTQGMQGPPGPRGMQGPPHPHGIQGG-----PGSQGI----QGPVSQ 773
Query: 184 GQPMGNY--------GPRPNMSMQPNQGPMMHQQPPSQQYNMPQGG-----GQHYQGQQP 230
G MG GPR N P QG +M P + P GG Q +G Q
Sbjct: 774 GPLMGLNPRGMQGPPGPRENQGPAP-QGMIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQE 832
Query: 231 PMGMMGQVNQGNHMMGQRQI--PPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQ 288
GM G QG+ + +++ PP QQGPPQ G G Q G QG
Sbjct: 833 IRGMQGPPPQGSMLGPPQELRGPPGSQSQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARG 892
Query: 289 QYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEG----GNSQYGQQQ-----DAYQGP 339
+ G + Q+ G P+ Q G Q G Q + QGP
Sbjct: 893 PHPSQGPIPFQQQKTPLLGDGPRAPFNQEGQSTGPPPLIPGLGQQGAQGRIPPLNPGQGP 952
Query: 340 PPQQGY---PPQQQQYPGQQGYPGQQQG--YGPSQG---------------GPGPQYPN- 378
P +G PP P + Q G +GP +G GP P +P+
Sbjct: 953 GPNKGDSRGPPNHHMGPMSERRHEQSGGPEHGPERGPFRGGQDCRGPPDRRGPHPDFPDD 1012
Query: 379 -------YP-----------QGQG---QQYGGYRPTQPGPPQPPQQRPYGYDQGQ 412
+P +G+G Q +R PGPP PP R + G+
Sbjct: 1013 FSRPDDFHPDKRFGHRLREFEGRGGPLPQEEKWRRGGPGPPFPPDHREFSEGDGR 1067
Score = 77.8 bits (190), Expect = 2e-14
Identities = 100/392 (25%), Positives = 142/392 (36%), Gaps = 93/392 (23%)
Query: 75 LPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPP----APHMQNQMNG----Q 126
+ P +Q MG GPP P + GM+ G PP PH + G +
Sbjct: 767 IQGPVSQGPLMGLNPRGMQGPPGPRENQGPAPQGMIMGHPPQEMRGPHPPGGLLGHGPQE 826
Query: 127 MPGPNHM-PMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQ 185
M GP + MQGP P S + P G P SQS QG
Sbjct: 827 MRGPQEIRGMQGPPPQ-----GSMLGPPQELRGP--------PGSQS---------QQGP 864
Query: 186 PMGNYGPRPNMSMQPNQGPMMHQQP-----------PSQQYNMPQGG-------GQHYQG 227
P G+ GP P MQ GP Q P P QQ P G Q Q
Sbjct: 865 PQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIPFQQQKTPLLGDGPRAPFNQEGQS 924
Query: 228 QQPPMGMMGQVNQGNHMMGQRQIPPYRPPQ---------QGPPQQYSG------QEDYYG 272
PP + G QG Q +IPP P Q +GPP + G E G
Sbjct: 925 TGPPPLIPGLGQQG----AQGRIPPLNPGQGPGPNKGDSRGPPNHHMGPMSERRHEQSGG 980
Query: 273 DQYS------HGGQ---GPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYE 323
++ GGQ GPP+ + +PD +D+ +P++ + + +E
Sbjct: 981 PEHGPERGPFRGGQDCRGPPD--RRGPHPDFPDDFSRPDDFHPDKRFGHRLRE-----FE 1033
Query: 324 GGNSQYGQQQDAYQGPPPQQGYPPQQQQYP------GQQGYPGQQQGYGPSQGGPGPQYP 377
G Q++ +G P +PP +++ +G PG +G P P+ P
Sbjct: 1034 GRGGPLPQEEKWRRGGPGPP-FPPDHREFSEGDGRGAARGPPGAWEGRRPGD-ERFPRDP 1091
Query: 378 NYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYD 409
P+ +G++ +R P P + P G D
Sbjct: 1092 EDPRFRGRREESFRRGAP-PRHEGRAPPRGRD 1122
Score = 71.6 bits (174), Expect = 1e-12
Identities = 78/247 (31%), Positives = 89/247 (36%), Gaps = 55/247 (22%)
Query: 174 PVQNQMTMSQGQPMGNYGPRPNMSMQPNQ------GPMMHQQPPSQQYNMPQGGGQHYQG 227
P Q MSQ P G P P+ M N GP +PP Q M G +QG
Sbjct: 587 PFPGQGPMSQ-IPQGFQQPHPSQQMPMNMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQG 645
Query: 228 QQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMN 287
P G MG P P QGPPQ +D +G P+GM
Sbjct: 646 GGGPQGFMG---------------PQGP--QGPPQGLPRPQDMHG----------PQGM- 677
Query: 288 QQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGY-- 345
Q +P H G Q P P QG P G G QGPP QG+
Sbjct: 678 -QRHPGPHGPLGPQGPPGP-QGSSGPQGHMGPQGPPGPQGHIGP-----QGPPGPQGHLG 730
Query: 346 ---PPQQQQYPGQQGYPGQQQGYGPS-----QGGPGPQYPNYPQGQGQQYGGYRPTQPGP 397
PP Q G QG PG + GP QGGPG Q P QG G GP
Sbjct: 731 PQGPPGTQ---GMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLNPRGMQGP 787
Query: 398 PQPPQQR 404
P P + +
Sbjct: 788 PGPRENQ 794
Score = 71.6 bits (174), Expect = 1e-12
Identities = 86/272 (31%), Positives = 101/272 (37%), Gaps = 35/272 (12%)
Query: 170 SQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNM-PQGGGQHYQGQ 228
SQ MP+ N M P G + P QGP +HQ Q M PQG QG
Sbjct: 607 SQQMPM-NMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQGL 665
Query: 229 QPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGP-----PQQYSGQEDYYGDQYSHGGQGPP 283
P M G H + P PP GP PQ + G + G Q G QGPP
Sbjct: 666 PRPQDMHGPQGMQRHPGPHGPLGPQGPP--GPQGSSGPQGHMGPQGPPGPQGHIGPQGPP 723
Query: 284 EGMNQQYYPDG-HNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQG---- 338
G P G G Q P P P+ H +GG G Q QG
Sbjct: 724 -GPQGHLGPQGPPGTQGMQGPPGPRGMQGPPH----PHGIQGGPGSQGIQGPVSQGPLMG 778
Query: 339 --PPPQQGYP-PQQQQYPGQQGY-----PGQQQGYGPSQG--GPGPQYPNYPQG-QGQQY 387
P QG P P++ Q P QG P + +G P G G GPQ PQ +G Q
Sbjct: 779 LNPRGMQGPPGPRENQGPAPQGMIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQEIRGMQG 838
Query: 388 GGYRPTQPGPPQ-----PPQQRPYGYDQGQYG 414
+ + GPPQ P Q G QG G
Sbjct: 839 PPPQGSMLGPPQELRGPPGSQSQQGPPQGSLG 870
Score = 40.8 bits (94), Expect = 0.002
Identities = 36/95 (37%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Query: 325 GNSQYGQQQDAYQGPPPQ--QGY--PPQQQQYP---GQQGYPGQQQGYGPSQGGPGPQYP 377
G G Q QGP Q QG+ P QQ P Q G PG Q + P PGPQ
Sbjct: 579 GTPLLGPQPFPGQGPMSQIPQGFQQPHPSQQMPMNMAQMGPPGPQGQFRP----PGPQGQ 634
Query: 378 NYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQ 412
PQG GG P PQ PQ P G + Q
Sbjct: 635 MGPQGPPLHQGGGGPQGFMGPQGPQGPPQGLPRPQ 669
Score = 31.6 bits (70), Expect = 1.4
Identities = 31/86 (36%), Positives = 34/86 (39%), Gaps = 17/86 (19%)
Query: 331 QQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPN-YPQGQGQQYGG 389
Q+Q PPP G P G Q +PGQ GP Q P + Q Q
Sbjct: 566 QKQVEQIQPPPSSGTP-----LLGPQPFPGQ---------GPMSQIPQGFQQPHPSQQMP 611
Query: 390 YRPTQPGPPQPPQQ-RPYGYDQGQYG 414
Q GPP P Q RP G QGQ G
Sbjct: 612 MNMAQMGPPGPQGQFRPPG-PQGQMG 636
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 87.8 bits (216), Expect = 2e-17
Identities = 104/343 (30%), Positives = 123/343 (35%), Gaps = 64/343 (18%)
Query: 67 SNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQ 126
S + S++ P P G G Q PPPP + P G NQ G
Sbjct: 24 SQEESPSVISGKPEGRRPQG-GNQPQRTPPPPGKPEGRPPQG-----------GNQSQGP 71
Query: 127 MPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGS--MGGYNHSVPSSQSMPVQNQMTMSQG 184
P P +GP P N + P G GG P + G
Sbjct: 72 PPRPGKP--EGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRP-----------G 118
Query: 185 QPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMM-GQVNQGNH 243
+P G N S P P + PP PQGG Q QG P G G QG +
Sbjct: 119 KPEGPPPQGGNQSQGPPPRPGKPEGPP------PQGGNQS-QGPPPRPGKPEGPPPQGGN 171
Query: 244 MMGQRQIPPYRPPQ-QGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQ 302
Q Q PP P + +GPP Q Q QGPP + P+G G Q
Sbjct: 172 ---QSQGPPPHPGKPEGPPPQGGNQS-----------QGPPPRPGK---PEGPPPQGGNQ 214
Query: 303 PSYPEQGYDRPYEDSSQHYYEGGNSQYGQ--QQDAYQGPPPQQGYPPQQQQYPGQ-QGYP 359
P +P SQ GGN G QGPPPQ+G PQ+ PG+ QG P
Sbjct: 215 SQGPPPRPGKPEGPPSQ----GGNKPQGPPPHPGKPQGPPPQEGNKPQRPPPPGRPQGPP 270
Query: 360 GQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQ 402
G P Q P P PQG G RP +P QPPQ
Sbjct: 271 --PPGGNPQQ--PLPPPAGKPQGPPPPPQGGRPHRPPQGQPPQ 309
Score = 79.0 bits (193), Expect = 8e-15
Identities = 83/240 (34%), Positives = 99/240 (41%), Gaps = 42/240 (17%)
Query: 184 GQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMM-GQVNQGN 242
G+P G N S P P + PP PQGG Q QG P G GQ QG
Sbjct: 55 GKPEGRPPQGGNQSQGPPPRPGKPEGPP------PQGGNQS-QGPPPRPGKPEGQPPQGG 107
Query: 243 HMMGQRQIPPYRPPQ-QGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQY-------YPDG 294
+ Q Q PP RP + +GPP Q Q + PP+G NQ P+G
Sbjct: 108 N---QSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEG 164
Query: 295 HNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQ----QGYPPQQ- 349
G Q P +P EG Q G Q QGPPP+ +G PPQ
Sbjct: 165 PPPQGGNQSQGPPPHPGKP---------EGPPPQGGNQS---QGPPPRPGKPEGPPPQGG 212
Query: 350 QQYPGQQGYPGQQQGYGPSQGGPGPQ----YPNYPQGQGQQYGGYRPTQPGPPQPPQQRP 405
Q G PG+ +G PSQGG PQ +P PQG Q G +P +P PP PQ P
Sbjct: 213 NQSQGPPPRPGKPEG-PPSQGGNKPQGPPPHPGKPQGPPPQEGN-KPQRPPPPGRPQGPP 270
Score = 69.7 bits (169), Expect = 5e-12
Identities = 78/255 (30%), Positives = 101/255 (39%), Gaps = 49/255 (19%)
Query: 170 SQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQ 229
++ + + ++ G+P G RP QP + P PP + P GG QG
Sbjct: 20 NEDVSQEESPSVISGKPEGR---RPQGGNQPQRTP----PPPGKPEGRPPQGGNQSQGPP 72
Query: 230 PPMGMM-GQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQ 288
P G G QG + Q Q PP RP G P+ GQ G+Q QGPP +
Sbjct: 73 PRPGKPEGPPPQGGN---QSQGPPPRP---GKPE---GQPPQGGNQ----SQGPPPRPGK 119
Query: 289 QYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQ----QG 344
P+G G Q P +P EG Q G Q QGPPP+ +G
Sbjct: 120 ---PEGPPPQGGNQSQGPPPRPGKP---------EGPPPQGGNQS---QGPPPRPGKPEG 164
Query: 345 YPPQQ-QQYPGQQGYPGQQQGYGPSQGG-------PGPQYPNYPQGQGQQYGGYRPTQPG 396
PPQ Q G +PG+ +G P QGG P P P P QG P +PG
Sbjct: 165 PPPQGGNQSQGPPPHPGKPEG-PPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPG 223
Query: 397 PPQPPQQRPYGYDQG 411
P+ P + QG
Sbjct: 224 KPEGPPSQGGNKPQG 238
>gi|10047104 synovial sarcoma translocation gene on chromosome
18-like 2 [Homo sapiens]
Length = 77
Score = 82.8 bits (203), Expect = 5e-16
Identities = 38/73 (52%), Positives = 53/73 (72%)
Query: 1 MSVAFAAPRQRGKGEITPAAIQKMLDDNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVY 60
MSVAF RGK E+ IQ++L++N+ LI+CI++ QNKG+ +EC QYQ +LH NL+Y
Sbjct: 1 MSVAFVPDWLRGKAEVNQETIQRLLEENDQLIRCIVEYQNKGRGNECVQYQHVLHRNLIY 60
Query: 61 LATIADSNQNMQS 73
LATIAD++ S
Sbjct: 61 LATIADASPTSTS 73
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 80.1 bits (196), Expect = 3e-15
Identities = 84/260 (32%), Positives = 108/260 (41%), Gaps = 51/260 (19%)
Query: 169 SSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQ 228
SS+ + + + + G+P G RP QP + P PP + P GG QG
Sbjct: 19 SSEDVSQEESLFLISGKPEGR---RPQGGNQPQRPP----PPPGKPQGPPPQGGNQSQGP 71
Query: 229 QPPMGMM-GQVNQGNHMMGQRQIPPYRP--PQQGPPQQYSGQEDYYGDQYSHGGQGPPEG 285
PP G G+ QG + Q Q PP P P++ PPQ G+Q G PP G
Sbjct: 72 PPPPGKPEGRPPQGGN---QSQGPPPHPGKPERPPPQG--------GNQSQ--GTPPPPG 118
Query: 286 MNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQ--QQDAYQGPPPQQ 343
++ P G N +P P +RP +GGN G +GPPPQ+
Sbjct: 119 KPERPPPQGGNQS--HRPPPPPGKPERPPP-------QGGNQSQGPPPHPGKPEGPPPQE 169
Query: 344 GYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYP-QGQGQQYGGYRPTQP------- 395
G + + P PG+ QG P Q G PQ P P + QG G P QP
Sbjct: 170 GNKSRSARSP-----PGKPQG-PPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQAPPAGK 223
Query: 396 --GPPQPPQ-QRPYGYDQGQ 412
GPP PPQ RP QGQ
Sbjct: 224 PQGPPPPPQGGRPPRPAQGQ 243
Score = 64.7 bits (156), Expect = 1e-10
Identities = 65/206 (31%), Positives = 73/206 (35%), Gaps = 27/206 (13%)
Query: 78 PPTQNMPMGP---GGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPG-PNHM 133
PP P GP GG GPPPPP G G PP Q+Q PG P
Sbjct: 51 PPPPGKPQGPPPQGGNQSQGPPPPP--------GKPEGRPPQGGNQSQGPPPHPGKPERP 102
Query: 134 PMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQ------NQMTMSQGQPM 187
P Q G NQ T P G +H P P + NQ P
Sbjct: 103 PPQ--GGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPPPQGGNQSQGPPPHPG 160
Query: 188 GNYGPRP---NMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHM 244
GP P N S P Q PP Q+ N PQG + Q PP
Sbjct: 161 KPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGGNPQQPQAPP 220
Query: 245 MGQRQIPPYRPPQQG--PPQQYSGQE 268
G+ Q PP PP QG PP+ GQ+
Sbjct: 221 AGKPQGPP--PPPQGGRPPRPAQGQQ 244
Score = 50.8 bits (120), Expect = 2e-06
Identities = 46/168 (27%), Positives = 56/168 (33%), Gaps = 32/168 (19%)
Query: 70 NMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPG 129
N P PP + P G NQS PPPP G P P Q Q P
Sbjct: 108 NQSQGTPPPPGKPERPPPQGGNQSHRPPPPP-----------GKPERPPPQGGNQSQGPP 156
Query: 130 PNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGN 189
P+ +GP P + N + S+ + P G P Q + QG P
Sbjct: 157 PHPGKPEGPPPQEGNKSRSARSPPGKPQG---------------PPQQEGNKPQGPPP-- 199
Query: 190 YGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQ 237
P P QQP + PQG QG +PP GQ
Sbjct: 200 ----PGKPQGPPPAGGNPQQPQAPPAGKPQGPPPPPQGGRPPRPAQGQ 243
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 73.6 bits (179), Expect = 3e-13
Identities = 96/387 (24%), Positives = 124/387 (32%), Gaps = 62/387 (16%)
Query: 73 SLLPAPPTQNMPMGPGGMNQSGPPPP---PRSHNMPSDGMVGGGP-----PAPHMQNQ-M 123
+L APP N P + + PPPP P ++ S +G P P+PH Q M
Sbjct: 284 NLPSAPPPANFPH----VTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGM 339
Query: 124 NGQMPGPNHMPMQGPGPNQLNMTNSSMNMP----------------SSSHGSMGGYNHSV 167
G PGP P P P+ L +SS P SSS S
Sbjct: 340 GGLPPGPEKGPTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPF 399
Query: 168 PSSQSMP-VQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQ 226
P+SQ++P + + N P+ P+Q PP Y +
Sbjct: 400 PASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLANSNAHP 459
Query: 227 GQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQG-PPEG 285
G PP G + + + + QQ QQ Q+ Q HG G PP G
Sbjct: 460 GPFPP--STGAQSTAHPPVSTH----HHHHQQQQQQQQQQQQQQQQQQQHHGNSGPPPPG 513
Query: 286 MNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGY 345
G + + + P G RPY H +SQ Q GPP
Sbjct: 514 AFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAH-LPPPHSQVSYSQAGPNGPPVSSS- 571
Query: 346 PPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYP---------------QGQGQQYGGY 390
Q YP PSQG G YP P GY
Sbjct: 572 -SNSSSSTSQGSYPCSHP--SPSQGPQGAPYPFPPVPTVTTSSATLSTVIATVASSPAGY 628
Query: 391 RPTQPGPPQPPQQRPYGYDQGQYGNYQ 417
+ PP PP PYG G Y+
Sbjct: 629 KTA--SPPGPP---PYGKRAPSPGAYK 650
Score = 55.8 bits (133), Expect = 7e-08
Identities = 86/368 (23%), Positives = 115/368 (31%), Gaps = 53/368 (14%)
Query: 76 PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSD-GMVGGG----PPAPHMQNQMNGQMPGP 130
P P Q P G GG+ SGPP P+ S G GG PP + +G P
Sbjct: 213 PPPHPQLYPGGTGGV-LSGPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAP 271
Query: 131 NHMPMQGP--------GPNQLNMTNSSMNM-PSSSHGSMGGYNHSVPSSQSMPVQNQMTM 181
P P P N + + N+ P + + + S P + P+ +
Sbjct: 272 PTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPS 331
Query: 182 --SQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQ------YNMPQGGGQHYQGQQPPMG 233
+ GQ MG P P P P H PP+ P
Sbjct: 332 PHAMGQGMGGLPPGPEKG--PTLAPSPHSLPPASSSAPAPPMRFPYSSSSS-SSAAASSS 388
Query: 234 MMGQVNQGNHMMGQRQIPPYRPPQQGPPQ---QYSGQEDYYGDQ-------YSHGGQGPP 283
+ + + +P Y P PP S Q Y +S G PP
Sbjct: 389 SSSSSSSASPFPASQALPSY--PHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPP 446
Query: 284 EGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQ 343
+ H G PS Q P + H+++ Q QQQ Q
Sbjct: 447 PYGRLLANSNAHP--GPFPPSTGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQQ------ 498
Query: 344 GYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQ-PPQ 402
QQQQ+ G G P P +G G + +P G RP PGP PP
Sbjct: 499 ----QQQQHHGNSGPPPPGAFPHPLEG--GSSHHAHPYAMSPSLGSLRPYPPGPAHLPPP 552
Query: 403 QRPYGYDQ 410
Y Q
Sbjct: 553 HSQVSYSQ 560
Score = 31.2 bits (69), Expect = 1.8
Identities = 51/203 (25%), Positives = 63/203 (31%), Gaps = 55/203 (27%)
Query: 218 PQGGGQHYQGQQPPMGMMGQV-NQGNHMMGQRQIP--PYRPPQQGPPQQYSGQEDYYGDQ 274
P+ Q + P + G V N + G Q P PY PP PP
Sbjct: 121 PRDIDQDNRSTSPSIYSPGSVENDSDSSSGLSQGPARPYHPPPLFPPSPQ---------- 170
Query: 275 YSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQD 334
PP+ +Q P+ + PS GY P E + +
Sbjct: 171 -------PPDSTPRQ--PEASFE---PHPSVTPTGYHAPMEPPTSRMF------------ 206
Query: 335 AYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQ 394
Q PP PP Q YPG G GP GG P G G+Q+ PT
Sbjct: 207 --QAPPGAP--PPHPQLYPGGTGGVLSGPPMGPKGGGAASSVGG-PNG-GKQHP--PPTT 258
Query: 395 P----------GPPQPPQQRPYG 407
P PP P P G
Sbjct: 259 PISVSSSGASGAPPTKPPTTPVG 281
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 73.6 bits (179), Expect = 3e-13
Identities = 96/387 (24%), Positives = 124/387 (32%), Gaps = 62/387 (16%)
Query: 73 SLLPAPPTQNMPMGPGGMNQSGPPPP---PRSHNMPSDGMVGGGP-----PAPHMQNQ-M 123
+L APP N P + + PPPP P ++ S +G P P+PH Q M
Sbjct: 284 NLPSAPPPANFPH----VTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGM 339
Query: 124 NGQMPGPNHMPMQGPGPNQLNMTNSSMNMP----------------SSSHGSMGGYNHSV 167
G PGP P P P+ L +SS P SSS S
Sbjct: 340 GGLPPGPEKGPTLAPSPHSLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSASPF 399
Query: 168 PSSQSMP-VQNQMTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQ 226
P+SQ++P + + N P+ P+Q PP Y +
Sbjct: 400 PASQALPSYPHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPPPYGRLLANSNAHP 459
Query: 227 GQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQG-PPEG 285
G PP G + + + + QQ QQ Q+ Q HG G PP G
Sbjct: 460 GPFPP--STGAQSTAHPPVSTH----HHHHQQQQQQQQQQQQQQQQQQQHHGNSGPPPPG 513
Query: 286 MNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGY 345
G + + + P G RPY H +SQ Q GPP
Sbjct: 514 AFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAH-LPPPHSQVSYSQAGPNGPPVSSS- 571
Query: 346 PPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYP---------------QGQGQQYGGY 390
Q YP PSQG G YP P GY
Sbjct: 572 -SNSSSSTSQGSYPCSHP--SPSQGPQGAPYPFPPVPTVTTSSATLSTVIATVASSPAGY 628
Query: 391 RPTQPGPPQPPQQRPYGYDQGQYGNYQ 417
+ PP PP PYG G Y+
Sbjct: 629 KTA--SPPGPP---PYGKRAPSPGAYK 650
Score = 55.8 bits (133), Expect = 7e-08
Identities = 86/368 (23%), Positives = 115/368 (31%), Gaps = 53/368 (14%)
Query: 76 PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSD-GMVGGG----PPAPHMQNQMNGQMPGP 130
P P Q P G GG+ SGPP P+ S G GG PP + +G P
Sbjct: 213 PPPHPQLYPGGTGGV-LSGPPMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAP 271
Query: 131 NHMPMQGP--------GPNQLNMTNSSMNM-PSSSHGSMGGYNHSVPSSQSMPVQNQMTM 181
P P P N + + N+ P + + + S P + P+ +
Sbjct: 272 PTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPS 331
Query: 182 --SQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQ------YNMPQGGGQHYQGQQPPMG 233
+ GQ MG P P P P H PP+ P
Sbjct: 332 PHAMGQGMGGLPPGPEKG--PTLAPSPHSLPPASSSAPAPPMRFPYSSSSS-SSAAASSS 388
Query: 234 MMGQVNQGNHMMGQRQIPPYRPPQQGPPQ---QYSGQEDYYGDQ-------YSHGGQGPP 283
+ + + +P Y P PP S Q Y +S G PP
Sbjct: 389 SSSSSSSASPFPASQALPSY--PHSFPPPTSLSVSNQPPKYTQPSLPSQAVWSQGPPPPP 446
Query: 284 EGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQ 343
+ H G PS Q P + H+++ Q QQQ Q
Sbjct: 447 PYGRLLANSNAHP--GPFPPSTGAQSTAHPPVSTHHHHHQQQQQQQQQQQQQQQ------ 498
Query: 344 GYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQ-PPQ 402
QQQQ+ G G P P +G G + +P G RP PGP PP
Sbjct: 499 ----QQQQHHGNSGPPPPGAFPHPLEG--GSSHHAHPYAMSPSLGSLRPYPPGPAHLPPP 552
Query: 403 QRPYGYDQ 410
Y Q
Sbjct: 553 HSQVSYSQ 560
Score = 31.2 bits (69), Expect = 1.8
Identities = 51/203 (25%), Positives = 63/203 (31%), Gaps = 55/203 (27%)
Query: 218 PQGGGQHYQGQQPPMGMMGQV-NQGNHMMGQRQIP--PYRPPQQGPPQQYSGQEDYYGDQ 274
P+ Q + P + G V N + G Q P PY PP PP
Sbjct: 121 PRDIDQDNRSTSPSIYSPGSVENDSDSSSGLSQGPARPYHPPPLFPPSPQ---------- 170
Query: 275 YSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQD 334
PP+ +Q P+ + PS GY P E + +
Sbjct: 171 -------PPDSTPRQ--PEASFE---PHPSVTPTGYHAPMEPPTSRMF------------ 206
Query: 335 AYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQ 394
Q PP PP Q YPG G GP GG P G G+Q+ PT
Sbjct: 207 --QAPPGAP--PPHPQLYPGGTGGVLSGPPMGPKGGGAASSVGG-PNG-GKQHP--PPTT 258
Query: 395 P----------GPPQPPQQRPYG 407
P PP P P G
Sbjct: 259 PISVSSSGASGAPPTKPPTTPVG 281
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 72.4 bits (176), Expect = 7e-13
Identities = 103/399 (25%), Positives = 125/399 (31%), Gaps = 73/399 (18%)
Query: 86 GPGGMNQ-SGPPPPPRSHNMPSD-------GMVGGGPPAP-HMQNQMNGQMPGPNHMPMQ 136
G GG+ +GP H P+ PPAP + + G PG
Sbjct: 188 GGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAAAA 247
Query: 137 GPGP---NQLNMTNSSMNMPSSSHGSMGGYNHSV-----PSSQSMPVQNQMTMS------ 182
G P + + ++SS + G+MGG S P + P NQ+ S
Sbjct: 248 GSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARG 307
Query: 183 -QGQPMGNYGPRPNMSMQPNQGPMMHQQ----PPSQQYNMPQGGGQHYQGQQPPMGMMGQ 237
QG P G+Y P M Q + GG + PM G
Sbjct: 308 YQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHAPMSP-GS 366
Query: 238 VNQGNHMMGQRQIPPYRPPQQGP--PQQYSGQEDYY-------GDQYSHGGQGPPEG-MN 287
G + + P Q G PQ Y G Y G Q HG G P G
Sbjct: 367 SGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQT 426
Query: 288 QQYYPD----------GHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQ 337
Q YP G Y Q P Y +QG + YY + QQQ Y
Sbjct: 427 PQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYS 486
Query: 338 GPPPQQ------GYPPQQQQYPGQ----QGYPGQQQGYGPSQGGPGP------------- 374
PP Q Y Q Q P Q Q QQ P Q P P
Sbjct: 487 QQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPAPYPSQQSTTQQHPQ 546
Query: 375 QYPNYPQGQGQQ-YGGYRPTQPGPPQPPQQRPYGYDQGQ 412
P Y Q Q Q Y +P QP P QQ Y Q Q
Sbjct: 547 SQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQ 585
Score = 67.8 bits (164), Expect = 2e-11
Identities = 97/365 (26%), Positives = 116/365 (31%), Gaps = 78/365 (21%)
Query: 71 MQSLLPAPPTQNMPMG-PGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPG 129
+ LL +P + G PGG GP DG G GP M +Q G
Sbjct: 295 LNQLLTSPSSARGYQGYPGGDYSGGP----------QDGGAGKGPA--DMASQCWGAAAA 342
Query: 130 PNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGN 189
G Q S + P S S GG + Q +QM + QP G
Sbjct: 343 AAAAAAASGGAQQ-----RSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGG 397
Query: 190 YGPRPNMSMQPNQGPMMHQQPPSQQYNMP---------QG------GGQHYQGQQPPMGM 234
P + P GP P Q Y QG GG Y Q PP G
Sbjct: 398 TNPY-SQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQ 456
Query: 235 MGQVNQGNHMMG----------QRQIPPY--RPPQQGPPQQYSGQEDYYGDQYSHGGQGP 282
G G Q+Q PPY +PP Q P Q S Q+ P
Sbjct: 457 QGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQ--------P 508
Query: 283 PEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQ 342
P+ + QP Y +Q P++ S Y QQ Q P Q
Sbjct: 509 PQLQS-------------SQPPYSQQPSQPPHQQSPAPY-------PSQQSTTQQHPQSQ 548
Query: 343 QGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQ 402
Y Q Q P QQ P Q SQ PQ PQ Q Q Y + PPQ
Sbjct: 549 PPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQ----PQSQQSQQTAYSQQRFPPPQELS 604
Query: 403 QRPYG 407
Q +G
Sbjct: 605 QDSFG 609
Score = 62.0 bits (149), Expect = 1e-09
Identities = 84/334 (25%), Positives = 120/334 (35%), Gaps = 47/334 (14%)
Query: 65 ADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMN 124
A S + Q+ P P +Q +Q PPP + D AP M +
Sbjct: 569 APSTLSQQAAYPQPQSQQSQQT--AYSQQRFPPP---QELSQDSFGSQASSAPSMTSSKG 623
Query: 125 GQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMG-GYNHSVPSS----QSMPVQNQM 179
GQ ++ +Q + +++ S ++P + G++ G + S SS QS P Q+
Sbjct: 624 GQED--MNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPF 681
Query: 180 TMSQGQPM-GNYGPRPNMSMQP------NQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPM 232
+ + G GP P+ P GP+ P Q GQ P M
Sbjct: 682 SPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPSM 741
Query: 233 GMMGQVNQGNHMMGQRQIPPYRPPQQG---PPQQYSGQEDYYG----DQYSHGGQGPPEG 285
+M Q+P Y PQ G P+Q SG + + G Q S G GP G
Sbjct: 742 NQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPSGGQIHTGMGSYQQNSMGSYGPQGG 801
Query: 286 MNQQYYPDGHNDYGY-QQPSY---PEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPP 341
QY P G GY +QP+Y P Y + G +GQ G PP
Sbjct: 802 ---QYGPQG----GYPRQPNYNALPNANYPSAGMAGGINPMGAGGQMHGQ-----PGIPP 849
Query: 342 QQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQ 375
PP + + P YGP+ PQ
Sbjct: 850 YGTLPPGRMSHASMGNRP-----YGPNMANMPPQ 878
Score = 59.3 bits (142), Expect = 6e-09
Identities = 100/370 (27%), Positives = 127/370 (34%), Gaps = 76/370 (20%)
Query: 65 ADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGG---PPAPHMQN 121
ADS ++ + P P G G M GP P + S M GG PP P +
Sbjct: 1121 ADSKKSQPKIQPPSPA-----GSGSMQ--GPQTPQST----SSSMAEGGDLKPPTP--AS 1167
Query: 122 QMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTM 181
+ Q+P P+ PG ++ N S + N P+ P N M
Sbjct: 1168 TPHSQIP-----PL--PGMSRSNSVGIQDAFNDGSDSTFQKRNSMTPNPGYQPSMNTSDM 1220
Query: 182 SQGQPMGNYGPRPNMSMQPNQGPM--MHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVN 239
MG MS +PN+ P M + P S + M G G + G P
Sbjct: 1221 -----MGR------MSYEPNKDPYGSMRKAPGSDPF-MSSGQGPN-GGMGDPYSRAAGPG 1267
Query: 240 QGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYG 299
GN MG RQ PY P Y + G GP +G+ G
Sbjct: 1268 LGNVAMGPRQHYPYGGP--------------YDRVRTEPGIGP----------EGNMSTG 1303
Query: 300 YQQP----SYPEQGYDRP--YEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQ--QQ 351
QP S P+ G P Y Q + + YG Q QG P +P QQ
Sbjct: 1304 APQPNLMPSNPDSGMYSPSRYPPQQQQQQQQRHDSYGNQFST-QGTPSGSPFPSQQTTMY 1362
Query: 352 YPGQQGYPGQQQG-YGP-SQGGPGPQYP-NYPQGQGQQYGGYRPTQPGPPQPPQQRPYGY 408
QQ Y G YGP ++ G Y Y GQGQ P P PQP Q+
Sbjct: 1363 QQQQQNYKRPMDGTYGPPAKRHEGEMYSVPYSTGQGQPQQQQLP--PAQPQPASQQQAAQ 1420
Query: 409 DQGQYGNYQQ 418
Q Y Q
Sbjct: 1421 PSPQQDVYNQ 1430
Score = 55.5 bits (132), Expect = 9e-08
Identities = 115/448 (25%), Positives = 141/448 (31%), Gaps = 123/448 (27%)
Query: 80 TQNMPMGPGGMNQSGPP----PPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
+ + PM PG G P P P S P D M G P P+ Q GP P
Sbjct: 357 SHHAPMSPGSSGGGGQPLARTPQPSS---PMDQM-GKMRPQPYGGTNPYSQQQGPPSGPQ 412
Query: 136 QGPG-PNQLNMTNSSMNMPSSSHG----SMGG--------------------------YN 164
QG G P Q + + P + G +MGG YN
Sbjct: 413 QGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYN 472
Query: 165 HSVPS-SQSMPVQNQMTMSQ-------------GQPMGNYGPRPNMSMQPNQGPMMHQQP 210
P Q P +Q SQ QP +P S QP+Q P HQQ
Sbjct: 473 QQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPP--HQQS 530
Query: 211 P----SQQ------------YNMPQGGGQHYQGQQP----PMGMMGQVNQGNHMMGQRQI 250
P SQQ Y+ PQ YQ QQP P + Q Q Q
Sbjct: 531 PAPYPSQQSTTQQHPQSQPPYSQPQAQSP-YQQQQPQQPAPSTLSQQAAYPQPQSQQSQQ 589
Query: 251 PPYRPPQQGPPQQYSGQEDYYGDQYSHG-----GQGPPEGMNQ--QYYPDGHNDYGYQQP 303
Y + PPQ+ S +D +G Q S +G E MN Q P D
Sbjct: 590 TAYSQQRFPPPQELS--QDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSID 647
Query: 304 SYP--EQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGP----------------PPQQGY 345
P +G P +S G +S G+Q + Q P P G
Sbjct: 648 DLPMGTEGALSPGVSTS-----GISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGS 702
Query: 346 PPQQQQ----------YPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQ-----QYGGY 390
P Q PG Q P G S P + Q +G Q Y
Sbjct: 703 PASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQY 762
Query: 391 RPTQPGPPQPPQQRPYGYDQGQYGNYQQ 418
QPG P+Q G G+YQQ
Sbjct: 763 SSPQPGSALSPRQPSGGQIHTGMGSYQQ 790
Score = 49.3 bits (116), Expect = 6e-06
Identities = 94/373 (25%), Positives = 111/373 (29%), Gaps = 62/373 (16%)
Query: 78 PPTQNMPMGPGGMNQSGPPPPPRSHNM--PSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
PP P P P P +S P P A Q Q P P+ +
Sbjct: 516 PPYSQQPSQPPHQQSPAPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQ 575
Query: 136 QGPGPNQLNMTN-----SSMNMPSS---SHGSMGGYNHSVPS-SQSMPVQNQMTMS---- 182
Q P + + S P S S G S PS + S Q M +S
Sbjct: 576 QAAYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSR 635
Query: 183 -----------QGQPMGNYGP-RPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQ--HYQGQ 228
PMG G P +S Q P+Q P +G
Sbjct: 636 PSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGP 695
Query: 229 QP-PMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMN 287
P P+G V Q P P Q PP+ SGQ D H MN
Sbjct: 696 SPSPVGSPASVAQSR---SGPLSPAAVPGNQMPPRPPSGQSD----SIMH------PSMN 742
Query: 288 QQYYPDGHNDYGYQQ--PSYPEQGYDRPYEDSSQHYYEGGNSQYGQ---QQDAYQGPPPQ 342
Q D GY Q P P+ +P S GG G QQ++ PQ
Sbjct: 743 QSSIAQ---DRGYMQRNPQMPQYSSPQPGSALSPRQPSGGQIHTGMGSYQQNSMGSYGPQ 799
Query: 343 QGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQ 402
G Q YP Q Y PS G G P G G Q G P PP
Sbjct: 800 GGQYGPQGGYPRQPNYNALPNANYPSAGMAG---GINPMGAGGQMHGQPGIPPYGTLPPG 856
Query: 403 Q--------RPYG 407
+ RPYG
Sbjct: 857 RMSHASMGNRPYG 869
Score = 39.3 bits (90), Expect = 0.007
Identities = 41/150 (27%), Positives = 52/150 (34%), Gaps = 25/150 (16%)
Query: 79 PTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGP 138
P P G S PP NMP M GGP + G M QG
Sbjct: 1451 PQNQFPFQFGRDRVSAPPGTNAQQNMPPQMM--GGPIQASAEVAQQGTM-------WQGR 1501
Query: 139 GPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQ---------PMGN 189
+MT + N S+ G H V + M +Q +G P G
Sbjct: 1502 N----DMTYNYANRQSTGSAPQGPAYHGVNRTDEMLHTDQRANHEGSWPSHGTRQPPYGP 1557
Query: 190 YGPRPNMSMQPNQGPMMHQQPPSQQYNMPQ 219
P P M+ P P +Q PPS Q ++PQ
Sbjct: 1558 SAPVPPMTRPP---PSNYQPPPSMQNHIPQ 1584
Score = 31.2 bits (69), Expect = 1.8
Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 25/136 (18%)
Query: 52 QMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVG 111
+MLHT D N + P+ T+ P GP PPP ++
Sbjct: 1531 EMLHT---------DQRANHEGSWPSHGTRQPPYGPSAPVPPMTRPPPSNYQ-------- 1573
Query: 112 GGPPAPHMQNQM-NGQMPGPNHMPMQG-PGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPS 169
P P MQN + P P PM+ P++ +S M M + G +H P+
Sbjct: 1574 ---PPPSMQNHIPQVSSPAPLPRPMENRTSPSKSPFLHSGMKMQKA--GPPVPASHIAPA 1628
Query: 170 SQSMP-VQNQMTMSQG 184
P ++ +T G
Sbjct: 1629 PVQPPMIRRDITFPPG 1644
Score = 30.8 bits (68), Expect = 2.4
Identities = 29/95 (30%), Positives = 34/95 (35%), Gaps = 19/95 (20%)
Query: 75 LPAPPTQNMPMGPGGMNQSGPPP--------------PPRSHNMPSDGMVGGGPPAPHMQ 120
+P M PGGMN+ PP NM GM+G GPP
Sbjct: 875 MPPQVGSGMCPPPGGMNRKTQETAVAMHVAANSIQNRPPGYPNMNQGGMMGTGPPYGQGI 934
Query: 121 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSS 155
N M G M P P G M N+S M +S
Sbjct: 935 NSMAG-MINPQGPPYSMGG----TMANNSAGMAAS 964
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 72.4 bits (176), Expect = 7e-13
Identities = 103/399 (25%), Positives = 125/399 (31%), Gaps = 73/399 (18%)
Query: 86 GPGGMNQ-SGPPPPPRSHNMPSD-------GMVGGGPPAP-HMQNQMNGQMPGPNHMPMQ 136
G GG+ +GP H P+ PPAP + + G PG
Sbjct: 188 GGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAAAA 247
Query: 137 GPGP---NQLNMTNSSMNMPSSSHGSMGGYNHSV-----PSSQSMPVQNQMTMS------ 182
G P + + ++SS + G+MGG S P + P NQ+ S
Sbjct: 248 GSKPPPSSSASASSSSSSFAQQRFGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARG 307
Query: 183 -QGQPMGNYGPRPNMSMQPNQGPMMHQQ----PPSQQYNMPQGGGQHYQGQQPPMGMMGQ 237
QG P G+Y P M Q + GG + PM G
Sbjct: 308 YQGYPGGDYSGGPQDGGAGKGPADMASQCWGAAAAAAAAAAASGGAQQRSHHAPMSP-GS 366
Query: 238 VNQGNHMMGQRQIPPYRPPQQGP--PQQYSGQEDYY-------GDQYSHGGQGPPEG-MN 287
G + + P Q G PQ Y G Y G Q HG G P G
Sbjct: 367 SGGGGQPLARTPQPSSPMDQMGKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQT 426
Query: 288 QQYYPD----------GHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQ 337
Q YP G Y Q P Y +QG + YY + QQQ Y
Sbjct: 427 PQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYS 486
Query: 338 GPPPQQ------GYPPQQQQYPGQ----QGYPGQQQGYGPSQGGPGP------------- 374
PP Q Y Q Q P Q Q QQ P Q P P
Sbjct: 487 QQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPHQQSPAPYPSQQSTTQQHPQ 546
Query: 375 QYPNYPQGQGQQ-YGGYRPTQPGPPQPPQQRPYGYDQGQ 412
P Y Q Q Q Y +P QP P QQ Y Q Q
Sbjct: 547 SQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQ 585
Score = 67.8 bits (164), Expect = 2e-11
Identities = 97/365 (26%), Positives = 116/365 (31%), Gaps = 78/365 (21%)
Query: 71 MQSLLPAPPTQNMPMG-PGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPG 129
+ LL +P + G PGG GP DG G GP M +Q G
Sbjct: 295 LNQLLTSPSSARGYQGYPGGDYSGGP----------QDGGAGKGPA--DMASQCWGAAAA 342
Query: 130 PNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGN 189
G Q S + P S S GG + Q +QM + QP G
Sbjct: 343 AAAAAAASGGAQQ-----RSHHAPMSPGSSGGGGQPLARTPQPSSPMDQMGKMRPQPYGG 397
Query: 190 YGPRPNMSMQPNQGPMMHQQPPSQQYNMP---------QG------GGQHYQGQQPPMGM 234
P + P GP P Q Y QG GG Y Q PP G
Sbjct: 398 TNPY-SQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQ 456
Query: 235 MGQVNQGNHMMG----------QRQIPPY--RPPQQGPPQQYSGQEDYYGDQYSHGGQGP 282
G G Q+Q PPY +PP Q P Q S Q+ P
Sbjct: 457 QGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQ--------P 508
Query: 283 PEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQ 342
P+ + QP Y +Q P++ S Y QQ Q P Q
Sbjct: 509 PQLQS-------------SQPPYSQQPSQPPHQQSPAPY-------PSQQSTTQQHPQSQ 548
Query: 343 QGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQ 402
Y Q Q P QQ P Q SQ PQ PQ Q Q Y + PPQ
Sbjct: 549 PPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQ----PQSQQSQQTAYSQQRFPPPQELS 604
Query: 403 QRPYG 407
Q +G
Sbjct: 605 QDSFG 609
Score = 62.0 bits (149), Expect = 1e-09
Identities = 84/334 (25%), Positives = 120/334 (35%), Gaps = 47/334 (14%)
Query: 65 ADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMN 124
A S + Q+ P P +Q +Q PPP + D AP M +
Sbjct: 569 APSTLSQQAAYPQPQSQQSQQT--AYSQQRFPPP---QELSQDSFGSQASSAPSMTSSKG 623
Query: 125 GQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMG-GYNHSVPSS----QSMPVQNQM 179
GQ ++ +Q + +++ S ++P + G++ G + S SS QS P Q+
Sbjct: 624 GQED--MNLSLQSRPSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPF 681
Query: 180 TMSQGQPM-GNYGPRPNMSMQP------NQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPM 232
+ + G GP P+ P GP+ P Q GQ P M
Sbjct: 682 SPHTSPHLPGIRGPSPSPVGSPASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPSM 741
Query: 233 GMMGQVNQGNHMMGQRQIPPYRPPQQG---PPQQYSGQEDYYG----DQYSHGGQGPPEG 285
+M Q+P Y PQ G P+Q SG + + G Q S G GP G
Sbjct: 742 NQSSIAQDRGYMQRNPQMPQYSSPQPGSALSPRQPSGGQIHTGMGSYQQNSMGSYGPQGG 801
Query: 286 MNQQYYPDGHNDYGY-QQPSY---PEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPP 341
QY P G GY +QP+Y P Y + G +GQ G PP
Sbjct: 802 ---QYGPQG----GYPRQPNYNALPNANYPSAGMAGGINPMGAGGQMHGQ-----PGIPP 849
Query: 342 QQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQ 375
PP + + P YGP+ PQ
Sbjct: 850 YGTLPPGRMSHASMGNRP-----YGPNMANMPPQ 878
Score = 55.5 bits (132), Expect = 9e-08
Identities = 115/448 (25%), Positives = 141/448 (31%), Gaps = 123/448 (27%)
Query: 80 TQNMPMGPGGMNQSGPP----PPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
+ + PM PG G P P P S P D M G P P+ Q GP P
Sbjct: 357 SHHAPMSPGSSGGGGQPLARTPQPSS---PMDQM-GKMRPQPYGGTNPYSQQQGPPSGPQ 412
Query: 136 QGPG-PNQLNMTNSSMNMPSSSHG----SMGG--------------------------YN 164
QG G P Q + + P + G +MGG YN
Sbjct: 413 QGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYTQQIPPYGQQGPSGYGQQGQTPYYN 472
Query: 165 HSVPS-SQSMPVQNQMTMSQ-------------GQPMGNYGPRPNMSMQPNQGPMMHQQP 210
P Q P +Q SQ QP +P S QP+Q P HQQ
Sbjct: 473 QQSPHPQQQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPP--HQQS 530
Query: 211 P----SQQ------------YNMPQGGGQHYQGQQP----PMGMMGQVNQGNHMMGQRQI 250
P SQQ Y+ PQ YQ QQP P + Q Q Q
Sbjct: 531 PAPYPSQQSTTQQHPQSQPPYSQPQAQSP-YQQQQPQQPAPSTLSQQAAYPQPQSQQSQQ 589
Query: 251 PPYRPPQQGPPQQYSGQEDYYGDQYSHG-----GQGPPEGMNQ--QYYPDGHNDYGYQQP 303
Y + PPQ+ S +D +G Q S +G E MN Q P D
Sbjct: 590 TAYSQQRFPPPQELS--QDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSID 647
Query: 304 SYP--EQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGP----------------PPQQGY 345
P +G P +S G +S G+Q + Q P P G
Sbjct: 648 DLPMGTEGALSPGVSTS-----GISSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGS 702
Query: 346 PPQQQQ----------YPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQ-----QYGGY 390
P Q PG Q P G S P + Q +G Q Y
Sbjct: 703 PASVAQSRSGPLSPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDRGYMQRNPQMPQY 762
Query: 391 RPTQPGPPQPPQQRPYGYDQGQYGNYQQ 418
QPG P+Q G G+YQQ
Sbjct: 763 SSPQPGSALSPRQPSGGQIHTGMGSYQQ 790
Score = 49.3 bits (116), Expect = 6e-06
Identities = 94/373 (25%), Positives = 111/373 (29%), Gaps = 62/373 (16%)
Query: 78 PPTQNMPMGPGGMNQSGPPPPPRSHNM--PSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
PP P P P P +S P P A Q Q P P+ +
Sbjct: 516 PPYSQQPSQPPHQQSPAPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQ 575
Query: 136 QGPGPNQLNMTN-----SSMNMPSS---SHGSMGGYNHSVPS-SQSMPVQNQMTMS---- 182
Q P + + S P S S G S PS + S Q M +S
Sbjct: 576 QAAYPQPQSQQSQQTAYSQQRFPPPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSR 635
Query: 183 -----------QGQPMGNYGP-RPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQ--HYQGQ 228
PMG G P +S Q P+Q P +G
Sbjct: 636 PSSLPDLSGSIDDLPMGTEGALSPGVSTSGISSSQGEQSNPAQSPFSPHTSPHLPGIRGP 695
Query: 229 QP-PMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMN 287
P P+G V Q P P Q PP+ SGQ D H MN
Sbjct: 696 SPSPVGSPASVAQSR---SGPLSPAAVPGNQMPPRPPSGQSD----SIMH------PSMN 742
Query: 288 QQYYPDGHNDYGYQQ--PSYPEQGYDRPYEDSSQHYYEGGNSQYGQ---QQDAYQGPPPQ 342
Q D GY Q P P+ +P S GG G QQ++ PQ
Sbjct: 743 QSSIAQ---DRGYMQRNPQMPQYSSPQPGSALSPRQPSGGQIHTGMGSYQQNSMGSYGPQ 799
Query: 343 QGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQ 402
G Q YP Q Y PS G G P G G Q G P PP
Sbjct: 800 GGQYGPQGGYPRQPNYNALPNANYPSAGMAG---GINPMGAGGQMHGQPGIPPYGTLPPG 856
Query: 403 Q--------RPYG 407
+ RPYG
Sbjct: 857 RMSHASMGNRPYG 869
Score = 44.3 bits (103), Expect = 2e-04
Identities = 89/349 (25%), Positives = 113/349 (32%), Gaps = 97/349 (27%)
Query: 65 ADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGG---PPAPHMQN 121
ADS ++ + P P G G M GP P + S M GG PP P +
Sbjct: 1121 ADSKKSQPKIQPPSPA-----GSGSMQ--GPQTPQST----SSSMAEGGDLKPPTP--AS 1167
Query: 122 QMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTM 181
+ Q+P P+ PG ++ N S + N P+ P N M
Sbjct: 1168 TPHSQIP-----PL--PGMSRSNSVGIQDAFNDGSDSTFQKRNSMTPNPGYQPSMNTSDM 1220
Query: 182 SQGQPMGNYGPRPNMSMQPNQGPM--MHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVN 239
MG MS +PN+ P M + P S + M G G + G P
Sbjct: 1221 -----MGR------MSYEPNKDPYGSMRKAPGSDPF-MSSGQGPN-GGMGDPYSRAAGPG 1267
Query: 240 QGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYG 299
GN MG RQ PY P Y + G GP +G+ G
Sbjct: 1268 LGNVAMGPRQHYPYGGP--------------YDRVRTEPGIGP----------EGNMSTG 1303
Query: 300 YQQP----SYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQ 355
QP S P+ G P S+Y PPQQ QQQQ
Sbjct: 1304 APQPNLMPSNPDSGMYSP-------------SRY----------PPQQ----QQQQQQRH 1336
Query: 356 QGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQR 404
Y Q G G P P Q QQ P P+P + R
Sbjct: 1337 DSYGNQFSTQGTPSGSPFPSQQTTMYQQQQQVSSPAPL----PRPMENR 1381
Score = 30.8 bits (68), Expect = 2.4
Identities = 29/95 (30%), Positives = 34/95 (35%), Gaps = 19/95 (20%)
Query: 75 LPAPPTQNMPMGPGGMNQSGPPP--------------PPRSHNMPSDGMVGGGPPAPHMQ 120
+P M PGGMN+ PP NM GM+G GPP
Sbjct: 875 MPPQVGSGMCPPPGGMNRKTQETAVAMHVAANSIQNRPPGYPNMNQGGMMGTGPPYGQGI 934
Query: 121 NQMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSS 155
N M G M P P G M N+S M +S
Sbjct: 935 NSMAG-MINPQGPPYSMGG----TMANNSAGMAAS 964
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 69.7 bits (169), Expect = 5e-12
Identities = 103/395 (26%), Positives = 122/395 (30%), Gaps = 61/395 (15%)
Query: 69 QNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGG---------------- 112
Q Q L +MP G GM G P S N+P V G
Sbjct: 1929 QQQQHLYRVNINNSMPPGRTGMGTPGSQMAPVSLNVPRPNQVSGPVMPSMPPGQWQQAPL 1988
Query: 113 -------GPPAPHMQNQMNGQMPGPNHMPMQGP---GPNQLNMTNSSMNMPSSSHGSMGG 162
G P P + Q + GP +Q P P+ L ++ PSS
Sbjct: 1989 PQQQPMPGLPRPVISMQAQAAVAGPRMPSVQPPRSISPSALQDLLRTLKSPSSPQQQQQV 2048
Query: 163 YNHSVPSSQSMPVQ-NQMTMSQGQPMGNYGPRPNMSMQPNQGPM--MHQQPPSQQYNMPQ 219
N + Q M Q T P+P + QP P MHQQP Q N Q
Sbjct: 2049 LNILKSNPQLMAAFIKQRTAKYVANQPGMQPQPGLQSQPGMQPQPGMHQQPSLQNLNAMQ 2108
Query: 220 GG--------GQHYQGQQPPMGM-MGQVNQGNHMMGQRQIPPYRPP------QQGPPQQY 264
G Q G P G + +N G++ P YR QQ QQ
Sbjct: 2109 AGVPRPGVPPQQQAMGGLNPQGQALNIMNPGHNPNMASMNPQYREMLRRQLLQQQQQQQQ 2168
Query: 265 SGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEG 324
Q+ Q S G G G Q P G Y P + SS
Sbjct: 2169 QQQQQQQQQQGSAGMAGGMAGHGQFQQPQGPGGYPPAMQQQQRMQQHLPLQGSSMGQMAA 2228
Query: 325 GNSQYGQQQDAYQG----PPPQQGYPP---QQQQYPGQQGYPGQQQGYGPSQG--GPGPQ 375
Q GQ G P QQ QQQQ Q G PGQ P Q PQ
Sbjct: 2229 QMGQLGQMGQPGLGADSTPNIQQALQQRILQQQQMKQQIGSPGQPNPMSPQQHMLSGQPQ 2288
Query: 376 YPNYPQGQGQQYGGYRPTQPGPPQP-----PQQRP 405
+ P GQQ Q P P PQ +P
Sbjct: 2289 ASHLP---GQQIATSLSNQVRSPAPVQSPRPQSQP 2320
Score = 33.9 bits (76), Expect = 0.28
Identities = 39/151 (25%), Positives = 48/151 (31%), Gaps = 36/151 (23%)
Query: 73 SLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNH 132
S LP PP P+ P PPP + MPS + P P
Sbjct: 803 SQLPCPPVTQSPLHP------TPPPASTAAGMPS----------------LQHTTP-PGM 839
Query: 133 MPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMS-QGQPMGNYG 191
P Q P Q PS+ S G P S Q Q T + Q
Sbjct: 840 TPPQPAAPTQ----------PSTPVSSSGQTPTPTPGSVPSATQTQSTPTVQAAAQAQVT 889
Query: 192 PRPNMSMQPNQ--GPMMHQQPPSQQYNMPQG 220
P+P +QP P QQ P+ + P G
Sbjct: 890 PQPQTPVQPPSVATPQSSQQQPTPVHAQPPG 920
Score = 31.6 bits (70), Expect = 1.4
Identities = 38/155 (24%), Positives = 55/155 (35%), Gaps = 24/155 (15%)
Query: 65 ADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMN 124
ADS N+Q L Q M Q G P P P Q+ ++
Sbjct: 2243 ADSTPNIQQALQQRILQQQQM----KQQIGSPGQPN--------------PMSPQQHMLS 2284
Query: 125 GQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQG 184
GQ P +H+P Q + N S + S S ++ P Q P + ++ G
Sbjct: 2285 GQ-PQASHLPGQQIATSLSNQVRSPAPVQSPRPQSQPPHSSPSPRIQPQPSPHHVSPQTG 2343
Query: 185 QPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQ 219
P + G M+ +QG H P Q +PQ
Sbjct: 2344 SP--HPGLAVTMASSIDQG---HLGNPEQSAMLPQ 2373
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 69.7 bits (169), Expect = 5e-12
Identities = 103/395 (26%), Positives = 122/395 (30%), Gaps = 61/395 (15%)
Query: 69 QNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGG---------------- 112
Q Q L +MP G GM G P S N+P V G
Sbjct: 1967 QQQQHLYRVNINNSMPPGRTGMGTPGSQMAPVSLNVPRPNQVSGPVMPSMPPGQWQQAPL 2026
Query: 113 -------GPPAPHMQNQMNGQMPGPNHMPMQGP---GPNQLNMTNSSMNMPSSSHGSMGG 162
G P P + Q + GP +Q P P+ L ++ PSS
Sbjct: 2027 PQQQPMPGLPRPVISMQAQAAVAGPRMPSVQPPRSISPSALQDLLRTLKSPSSPQQQQQV 2086
Query: 163 YNHSVPSSQSMPVQ-NQMTMSQGQPMGNYGPRPNMSMQPNQGPM--MHQQPPSQQYNMPQ 219
N + Q M Q T P+P + QP P MHQQP Q N Q
Sbjct: 2087 LNILKSNPQLMAAFIKQRTAKYVANQPGMQPQPGLQSQPGMQPQPGMHQQPSLQNLNAMQ 2146
Query: 220 GG--------GQHYQGQQPPMGM-MGQVNQGNHMMGQRQIPPYRPP------QQGPPQQY 264
G Q G P G + +N G++ P YR QQ QQ
Sbjct: 2147 AGVPRPGVPPQQQAMGGLNPQGQALNIMNPGHNPNMASMNPQYREMLRRQLLQQQQQQQQ 2206
Query: 265 SGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEG 324
Q+ Q S G G G Q P G Y P + SS
Sbjct: 2207 QQQQQQQQQQGSAGMAGGMAGHGQFQQPQGPGGYPPAMQQQQRMQQHLPLQGSSMGQMAA 2266
Query: 325 GNSQYGQQQDAYQG----PPPQQGYPP---QQQQYPGQQGYPGQQQGYGPSQG--GPGPQ 375
Q GQ G P QQ QQQQ Q G PGQ P Q PQ
Sbjct: 2267 QMGQLGQMGQPGLGADSTPNIQQALQQRILQQQQMKQQIGSPGQPNPMSPQQHMLSGQPQ 2326
Query: 376 YPNYPQGQGQQYGGYRPTQPGPPQP-----PQQRP 405
+ P GQQ Q P P PQ +P
Sbjct: 2327 ASHLP---GQQIATSLSNQVRSPAPVQSPRPQSQP 2358
Score = 33.9 bits (76), Expect = 0.28
Identities = 39/151 (25%), Positives = 48/151 (31%), Gaps = 36/151 (23%)
Query: 73 SLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNH 132
S LP PP P+ P PPP + MPS + P P
Sbjct: 841 SQLPCPPVTQSPLHP------TPPPASTAAGMPS----------------LQHTTP-PGM 877
Query: 133 MPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMS-QGQPMGNYG 191
P Q P Q PS+ S G P S Q Q T + Q
Sbjct: 878 TPPQPAAPTQ----------PSTPVSSSGQTPTPTPGSVPSATQTQSTPTVQAAAQAQVT 927
Query: 192 PRPNMSMQPNQ--GPMMHQQPPSQQYNMPQG 220
P+P +QP P QQ P+ + P G
Sbjct: 928 PQPQTPVQPPSVATPQSSQQQPTPVHAQPPG 958
Score = 31.6 bits (70), Expect = 1.4
Identities = 38/155 (24%), Positives = 55/155 (35%), Gaps = 24/155 (15%)
Query: 65 ADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMN 124
ADS N+Q L Q M Q G P P P Q+ ++
Sbjct: 2281 ADSTPNIQQALQQRILQQQQM----KQQIGSPGQPN--------------PMSPQQHMLS 2322
Query: 125 GQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQG 184
GQ P +H+P Q + N S + S S ++ P Q P + ++ G
Sbjct: 2323 GQ-PQASHLPGQQIATSLSNQVRSPAPVQSPRPQSQPPHSSPSPRIQPQPSPHHVSPQTG 2381
Query: 185 QPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQ 219
P + G M+ +QG H P Q +PQ
Sbjct: 2382 SP--HPGLAVTMASSIDQG---HLGNPEQSAMLPQ 2411
>gi|50345997 E1A binding protein p300 [Homo sapiens]
Length = 2414
Score = 69.3 bits (168), Expect = 6e-12
Identities = 110/439 (25%), Positives = 139/439 (31%), Gaps = 89/439 (20%)
Query: 49 QYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDG 108
Q QML + + Q P P T P G P P + P +
Sbjct: 1823 QQAQMLRRRMASMQRTGVVGQQQGLPSPTPATPTTPTGQQPTTPQTPQPTSQPQPTPPNS 1882
Query: 109 MVGGGP----PAPHMQNQMNGQMPGPN-----HMPMQGPGPNQLNMTNSSMNMPSSSHGS 159
M P P Q + GQ+ P P+ GP P + M +
Sbjct: 1883 MPPYLPRTQAAGPVSQGKAAGQVTPPTPPQTAQPPLPGPPPAAVEMAMQIQRAAETQRQM 1942
Query: 160 MGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPR----PNMSMQPNQGPM-MHQQPPSQQ 214
P MP M PMG P P+ ++P GP M QQPP Q
Sbjct: 1943 AHVQIFQRPIQHQMPPMTPMA-----PMGMNPPPMTRGPSGHLEPGMGPTGMQQQPPWSQ 1997
Query: 215 YNMPQGGGQHYQGQQPPMGMMGQVNQGNHM-------MGQRQIPPYRP------------ 255
+PQ Q Q P MM G + +GQ I P +P
Sbjct: 1998 GGLPQP--QQLQSGMPRPAMMSVAQHGQPLNMAPQPGLGQVGISPLKPGTVSQQALQNLL 2055
Query: 256 --------PQQ---------GPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDY 298
P Q PQ + +Y++ P G Q P G
Sbjct: 2056 RTLRSPSSPLQQQQVLSILHANPQLLAAFIKQRAAKYANSNPQPIPG--QPGMPQGQP-- 2111
Query: 299 GYQQPSYP-EQGYDRPYEDSSQHYYEGGNSQYG--QQQDAYQGPPPQQGYPPQQQQYP-- 353
G Q P+ P +QG + + + G + G QQQ Q PP G PQ QQ
Sbjct: 2112 GLQPPTMPGQQGVHSNPAMQNMNPMQAGVQRAGLPQQQPQQQLQPPMGGMSPQAQQMNMN 2171
Query: 354 --------------GQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQ 399
Q QQQG GP G GP N+ Q Q Q GY PPQ
Sbjct: 2172 HNTMPSQFRDILRRQQMMQQQQQQGAGP---GIGPGMANHNQFQQPQGVGY------PPQ 2222
Query: 400 PPQQRPYGYDQGQYGNYQQ 418
Q+ + Q Q GN Q
Sbjct: 2223 QQQRMQHHMQQMQQGNMGQ 2241
Score = 44.7 bits (104), Expect = 2e-04
Identities = 108/463 (23%), Positives = 150/463 (32%), Gaps = 100/463 (21%)
Query: 6 AAPRQRGK--GEITP-----AAIQKMLDDNNHLIQCIMDSQNKGKT----SECSQYQQML 54
A P +GK G++TP A + ++ M Q +T + +Q+ +
Sbjct: 1893 AGPVSQGKAAGQVTPPTPPQTAQPPLPGPPPAAVEMAMQIQRAAETQRQMAHVQIFQRPI 1952
Query: 55 HTNLVYLATIADSNQNMQSLLPAPPTQNMP-MGPGGMNQSGPPPPPRSHNMPSDGMVGGG 113
+ + +A N + P P MGP GM Q PP +P + G
Sbjct: 1953 QHQMPPMTPMAPMGMNPPPMTRGPSGHLEPGMGPTGMQQQ---PPWSQGGLPQPQQLQSG 2009
Query: 114 PPAPHMQN-QMNGQ------MPGPNHM---PMQGPGPNQLNMTN--SSMNMPSS--SHGS 159
P P M + +GQ PG + P++ +Q + N ++ PSS
Sbjct: 2010 MPRPAMMSVAQHGQPLNMAPQPGLGQVGISPLKPGTVSQQALQNLLRTLRSPSSPLQQQQ 2069
Query: 160 MGGYNHSVP---------------SSQSMPVQNQMTMSQGQP-------MGNYGPRPNMS 197
+ H+ P +S P+ Q M QGQP G G N +
Sbjct: 2070 VLSILHANPQLLAAFIKQRAAKYANSNPQPIPGQPGMPQGQPGLQPPTMPGQQGVHSNPA 2129
Query: 198 MQPNQGPM--------MHQQPPSQQYNMPQGGGQHYQGQQPPMG---------------- 233
MQ N PM + QQ P QQ P GG Q QQ M
Sbjct: 2130 MQ-NMNPMQAGVQRAGLPQQQPQQQLQPPMGG-MSPQAQQMNMNHNTMPSQFRDILRRQQ 2187
Query: 234 -MMGQVNQG----------NHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHG---- 278
M Q QG NH Q+ PPQQ Q+ Q+ G+ G
Sbjct: 2188 MMQQQQQQGAGPGIGPGMANHNQFQQPQGVGYPPQQQQRMQHHMQQMQQGNMGQIGQLPQ 2247
Query: 279 GQGPPEGMNQQYYPDGHNDYGYQQPSYPE----QGYDRPYEDSSQHY--YEGGNSQYGQQ 332
G G + Q Y P P Q + P + S H + NS Q
Sbjct: 2248 ALGAEAGASLQAYQQRLLQQQMGSPVQPNPMSPQQHMLPNQAQSPHLQGQQIPNSLSNQV 2307
Query: 333 QDAYQGPPPQ-QGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGP 374
+ P P+ Q PP P Q P P P P
Sbjct: 2308 RSPQPVPSPRPQSQPPHSSPSPRMQPQPSPHH-VSPQTSSPHP 2349
Score = 39.3 bits (90), Expect = 0.007
Identities = 54/196 (27%), Positives = 73/196 (37%), Gaps = 25/196 (12%)
Query: 79 PTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHM-----QNQMN--GQ--MPG 129
P NM GM +GP P P M+ G P M Q+ +N GQ M
Sbjct: 671 PGPNMGQPQPGMTSNGPLPDP--------SMIRGSVPNQMMPRITPQSGLNQFGQMSMAQ 722
Query: 130 PNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMG-GYNHSVPSSQSMPVQNQMTMSQGQPMG 188
P +P Q P P Q + + P + + MG G PS+Q + SQG +
Sbjct: 723 PPIVPRQTP-PLQ---HHGQLAQPGALNPPMGYGPRMQQPSNQGQFLPQTQFPSQGMNVT 778
Query: 189 NYGPRPNMSMQP-NQGPMMHQQPPSQQYNMPQGG-GQHYQGQQPPMGMMGQVNQGNHMMG 246
N P+ P +Q M P MP G G H Q P + Q N + +
Sbjct: 779 NIPLAPSSGQAPVSQAQMSSSSCPVNSPIMPPGSQGSHIHCPQLPQPALHQ-NSPSPVPS 837
Query: 247 QRQIPPYRPPQQGPPQ 262
+ P + PP G Q
Sbjct: 838 RTPTPHHTPPSIGAQQ 853
Score = 36.6 bits (83), Expect = 0.043
Identities = 64/240 (26%), Positives = 79/240 (32%), Gaps = 50/240 (20%)
Query: 201 NQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVN--QGNHMMGQRQIP-PYRPPQ 257
N GP M Q P N P +G P MM ++ G + GQ + P P+
Sbjct: 670 NPGPNMGQPQPGMTSNGPLPDPSMIRGSVPNQ-MMPRITPQSGLNQFGQMSMAQPPIVPR 728
Query: 258 QGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGY---DRPY 314
Q PP Q+ GQ G PP G + + Q +P QG + P
Sbjct: 729 QTPPLQHHGQ------LAQPGALNPPMGYGPRMQQPSNQGQFLPQTQFPSQGMNVTNIPL 782
Query: 315 EDSSQHYYEGGNSQYGQQQDAYQG--------PPPQQG---YPPQQQQYPGQQGYP---- 359
SS G + Q Q + PP QG + PQ Q Q P
Sbjct: 783 APSS------GQAPVSQAQMSSSSCPVNSPIMPPGSQGSHIHCPQLPQPALHQNSPSPVP 836
Query: 360 -------------GQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQ-PGPP--QPPQQ 403
G QQ + P P P P G Q P Q P PP Q PQQ
Sbjct: 837 SRTPTPHHTPPSIGAQQPPATTIPAPVPTPPAMPPGPQSQALHPPPRQTPTPPTTQLPQQ 896
Score = 30.0 bits (66), Expect = 4.1
Identities = 58/218 (26%), Positives = 81/218 (37%), Gaps = 28/218 (12%)
Query: 9 RQRGKGEITPAAI---QKMLDDNNHLIQCIMDSQNKGKTSECSQYQQML--------HTN 57
R++ GE+ + + M + NH+ C S + + C+ +Q++ H
Sbjct: 354 REQANGEVRQCNLPHCRTMKNVLNHMTHC--QSGKSCQVAHCASSRQIISHWKNCTRHDC 411
Query: 58 LVYLATI-ADSNQNMQSLLP-APPTQNMPMGPGGMNQSGPPPPPRSHNMPSD-GMVGGGP 114
V L A +N Q +L AP P G QS P S PS
Sbjct: 412 PVCLPLKNAGDKRNQQPILTGAPVGLGNPSSLGVGQQSAPNLSTVSQIDPSSIERAYAAL 471
Query: 115 PAPHMQNQM--NGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPS--S 170
P+ NQM Q+ N Q PG + M S NM +S G GG PS S
Sbjct: 472 GLPYQVNQMPTQPQVQAKNQQNQQ-PGQSPQGMRPMS-NMSASPMGVNGGVGVQTPSLLS 529
Query: 171 QSM-----PVQNQMTMSQGQPMGNYGPRPNMSMQPNQG 203
SM QN M MS+ + + GP P + G
Sbjct: 530 DSMLHSAINSQNPM-MSENASVPSLGPMPTAAQPSTTG 566
Score = 30.0 bits (66), Expect = 4.1
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 23/151 (15%)
Query: 67 SNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQ 126
+ Q + +PAP M PG +Q+ PPP ++ PP + Q+
Sbjct: 851 AQQPPATTIPAPVPTPPAMPPGPQSQALHPPPRQTPT----------PPTTQLPQQVQPS 900
Query: 127 MPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQP 186
+P P T +S+ P++ +P + P+ +GQ
Sbjct: 901 LPAAPSADQPQQQPRSQQSTAASVPTPTAP---------LLPPQPATPLSQPAVSIEGQV 951
Query: 187 MGNYGPRPNMSMQPNQGPMMHQQPPSQQYNM 217
P S + N + +Q PSQ+ M
Sbjct: 952 S---NPPSTSSTEVNSQAIAEKQ-PSQEVKM 978
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 67.4 bits (163), Expect = 2e-11
Identities = 101/346 (29%), Positives = 124/346 (35%), Gaps = 81/346 (23%)
Query: 88 GGMNQSGPPPPPRSHNMPSDGMV-GGGP-PAPHMQNQMNGQMPGP----NHMPMQGPGP- 140
GG + GP P P PS G + G P P+P + M G PGP + +P QGPG
Sbjct: 9 GGTPRPGPSPGPG----PSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64
Query: 141 NQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQP 200
Q NM M+ P S G P NQM +G M + G + M P
Sbjct: 65 PQDNM--HQMHKPMESMHEKG--------MSDDPRYNQM---KGMGMRSGG---HAGMGP 108
Query: 201 NQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG--QVNQGNHMMGQRQIPPYRPPQQ 258
PM SQ Y P GG +H P G Q++ G P P
Sbjct: 109 PPSPM---DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSG----------PGGAPLD 155
Query: 259 GPPQQYSGQEDYYGDQYSHGGQGP-PEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDS 317
G Q GQ++ +GP P NQ + Q +Y +P D
Sbjct: 156 GADPQALGQQN----------RGPTPFNQNQLH------QLRAQIMAYKMLARGQPLPDH 199
Query: 318 SQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYP 377
Q +G G QQ PPP PG PG G GP GPGP P
Sbjct: 200 LQMAVQGKRPMPGMQQQMPTLPPPS-----VSATGPG----PGPGPGPGP---GPGPAPP 247
Query: 378 NYPQGQGQQYGGYRPTQPGPP--------QPPQQRPYGYDQGQYGN 415
NY + G GG PGP QPP P + +G N
Sbjct: 248 NYSRPHGM--GGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMAN 291
Score = 43.9 bits (102), Expect = 3e-04
Identities = 64/255 (25%), Positives = 82/255 (32%), Gaps = 57/255 (22%)
Query: 27 DNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMG 86
DN H + M+S ++ S+ +Y QM + M M
Sbjct: 67 DNMHQMHKPMESMHEKGMSDDPRYNQM---------------------------KGMGMR 99
Query: 87 PGGMNQSGPPPPP-----RSHNMPSDGMVGGGPPAPHMQNQMNGQM-PGPNHMPMQGPGP 140
GG GPPP P + + P G P P QM GP P+ G P
Sbjct: 100 SGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADP 159
Query: 141 NQLNMTNS-----SMNMPSSSHGSMGGY-----NHSVPSSQSMPVQNQMTMSQGQPMGNY 190
L N + N + Y +P M VQ + M Q
Sbjct: 160 QALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPT 219
Query: 191 GPRPNMSMQ-----PNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMM 245
P P++S P GP P Y+ P G G PP G G V G M
Sbjct: 220 LPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMG---GPNMPPPGPSG-VPPG--MP 273
Query: 246 GQRQIPPYRPPQQGP 260
GQ PP PP+ P
Sbjct: 274 GQ---PPGGPPKPWP 285
Score = 43.1 bits (100), Expect = 5e-04
Identities = 78/324 (24%), Positives = 98/324 (30%), Gaps = 53/324 (16%)
Query: 67 SNQNMQSLLPAPPTQNMPM---GPGGMNQSGPPPPPRSHNM--PSDGMVGGGPPAPHMQN 121
S +M P PP+ P+ GPGG P H M P + M G N
Sbjct: 38 SAHSMMGPSPGPPSAGHPIPTQGPGGY------PQDNMHQMHKPMESMHEKGMSDDPRYN 91
Query: 122 QMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHS---VPSSQSMPVQNQ 178
QM G G G GP M S PS +GG H+ VP+S
Sbjct: 92 QMKGM--GMRSGGHAGMGPPPSPMDQHSQGYPSP----LGGSEHASSPVPASGPSSGPQM 145
Query: 179 MTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQV 238
+ G P+ G P Q N+GP Q Q + QP +
Sbjct: 146 SSGPGGAPLD--GADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMA 203
Query: 239 NQGNHMMG--QRQIPPYRPPQ-----------QGPPQQYSGQEDYYGDQYSHGGQGPPEG 285
QG M Q+Q+P PP GP Y + GG P
Sbjct: 204 VQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMP-- 261
Query: 286 MNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQ---------YGQQQDAY 336
P G + P P G +P+ + S G+ A
Sbjct: 262 ------PPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAP 315
Query: 337 QGPPPQQG-YPPQQQQYPGQQGYP 359
PP P Q Q PGQ P
Sbjct: 316 PAVPPAASPVMPPQTQSPGQPAQP 339
Score = 42.7 bits (99), Expect = 6e-04
Identities = 40/137 (29%), Positives = 50/137 (36%), Gaps = 23/137 (16%)
Query: 76 PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
PAPP + P G GG N PPP P G GGPP P
Sbjct: 244 PAPPNYSRPHGMGGPNM--PPPGPSGVPPGMPGQPPGGPPKPW----------------P 285
Query: 136 QGPGPNQLNMTNSSMNM-PSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRP 194
+GP N T++ + P G +VP + S PV T S GQP P P
Sbjct: 286 EGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAAS-PVMPPQTQSPGQPA---QPAP 341
Query: 195 NMSMQPNQGPMMHQQPP 211
+ + Q + Q P
Sbjct: 342 MVPLHQKQSRITPIQKP 358
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 67.4 bits (163), Expect = 2e-11
Identities = 101/346 (29%), Positives = 124/346 (35%), Gaps = 81/346 (23%)
Query: 88 GGMNQSGPPPPPRSHNMPSDGMV-GGGP-PAPHMQNQMNGQMPGP----NHMPMQGPGP- 140
GG + GP P P PS G + G P P+P + M G PGP + +P QGPG
Sbjct: 9 GGTPRPGPSPGPG----PSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64
Query: 141 NQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQP 200
Q NM M+ P S G P NQM +G M + G + M P
Sbjct: 65 PQDNM--HQMHKPMESMHEKG--------MSDDPRYNQM---KGMGMRSGG---HAGMGP 108
Query: 201 NQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG--QVNQGNHMMGQRQIPPYRPPQQ 258
PM SQ Y P GG +H P G Q++ G P P
Sbjct: 109 PPSPM---DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSG----------PGGAPLD 155
Query: 259 GPPQQYSGQEDYYGDQYSHGGQGP-PEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDS 317
G Q GQ++ +GP P NQ + Q +Y +P D
Sbjct: 156 GADPQALGQQN----------RGPTPFNQNQLH------QLRAQIMAYKMLARGQPLPDH 199
Query: 318 SQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYP 377
Q +G G QQ PPP PG PG G GP GPGP P
Sbjct: 200 LQMAVQGKRPMPGMQQQMPTLPPPS-----VSATGPG----PGPGPGPGP---GPGPAPP 247
Query: 378 NYPQGQGQQYGGYRPTQPGPP--------QPPQQRPYGYDQGQYGN 415
NY + G GG PGP QPP P + +G N
Sbjct: 248 NYSRPHGM--GGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMAN 291
Score = 43.9 bits (102), Expect = 3e-04
Identities = 64/255 (25%), Positives = 82/255 (32%), Gaps = 57/255 (22%)
Query: 27 DNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMG 86
DN H + M+S ++ S+ +Y QM + M M
Sbjct: 67 DNMHQMHKPMESMHEKGMSDDPRYNQM---------------------------KGMGMR 99
Query: 87 PGGMNQSGPPPPP-----RSHNMPSDGMVGGGPPAPHMQNQMNGQM-PGPNHMPMQGPGP 140
GG GPPP P + + P G P P QM GP P+ G P
Sbjct: 100 SGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADP 159
Query: 141 NQLNMTNS-----SMNMPSSSHGSMGGY-----NHSVPSSQSMPVQNQMTMSQGQPMGNY 190
L N + N + Y +P M VQ + M Q
Sbjct: 160 QALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPT 219
Query: 191 GPRPNMSMQ-----PNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMM 245
P P++S P GP P Y+ P G G PP G G V G M
Sbjct: 220 LPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMG---GPNMPPPGPSG-VPPG--MP 273
Query: 246 GQRQIPPYRPPQQGP 260
GQ PP PP+ P
Sbjct: 274 GQ---PPGGPPKPWP 285
Score = 43.1 bits (100), Expect = 5e-04
Identities = 78/324 (24%), Positives = 98/324 (30%), Gaps = 53/324 (16%)
Query: 67 SNQNMQSLLPAPPTQNMPM---GPGGMNQSGPPPPPRSHNM--PSDGMVGGGPPAPHMQN 121
S +M P PP+ P+ GPGG P H M P + M G N
Sbjct: 38 SAHSMMGPSPGPPSAGHPIPTQGPGGY------PQDNMHQMHKPMESMHEKGMSDDPRYN 91
Query: 122 QMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHS---VPSSQSMPVQNQ 178
QM G G G GP M S PS +GG H+ VP+S
Sbjct: 92 QMKGM--GMRSGGHAGMGPPPSPMDQHSQGYPSP----LGGSEHASSPVPASGPSSGPQM 145
Query: 179 MTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQV 238
+ G P+ G P Q N+GP Q Q + QP +
Sbjct: 146 SSGPGGAPLD--GADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMA 203
Query: 239 NQGNHMMG--QRQIPPYRPPQ-----------QGPPQQYSGQEDYYGDQYSHGGQGPPEG 285
QG M Q+Q+P PP GP Y + GG P
Sbjct: 204 VQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMP-- 261
Query: 286 MNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQ---------YGQQQDAY 336
P G + P P G +P+ + S G+ A
Sbjct: 262 ------PPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAP 315
Query: 337 QGPPPQQG-YPPQQQQYPGQQGYP 359
PP P Q Q PGQ P
Sbjct: 316 PAVPPAASPVMPPQTQSPGQPAQP 339
Score = 42.7 bits (99), Expect = 6e-04
Identities = 40/137 (29%), Positives = 50/137 (36%), Gaps = 23/137 (16%)
Query: 76 PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
PAPP + P G GG N PPP P G GGPP P
Sbjct: 244 PAPPNYSRPHGMGGPNM--PPPGPSGVPPGMPGQPPGGPPKPW----------------P 285
Query: 136 QGPGPNQLNMTNSSMNM-PSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRP 194
+GP N T++ + P G +VP + S PV T S GQP P P
Sbjct: 286 EGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAAS-PVMPPQTQSPGQPA---QPAP 341
Query: 195 NMSMQPNQGPMMHQQPP 211
+ + Q + Q P
Sbjct: 342 MVPLHQKQSRITPIQKP 358
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 67.4 bits (163), Expect = 2e-11
Identities = 101/346 (29%), Positives = 124/346 (35%), Gaps = 81/346 (23%)
Query: 88 GGMNQSGPPPPPRSHNMPSDGMV-GGGP-PAPHMQNQMNGQMPGP----NHMPMQGPGP- 140
GG + GP P P PS G + G P P+P + M G PGP + +P QGPG
Sbjct: 9 GGTPRPGPSPGPG----PSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64
Query: 141 NQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQP 200
Q NM M+ P S G P NQM +G M + G + M P
Sbjct: 65 PQDNM--HQMHKPMESMHEKG--------MSDDPRYNQM---KGMGMRSGG---HAGMGP 108
Query: 201 NQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG--QVNQGNHMMGQRQIPPYRPPQQ 258
PM SQ Y P GG +H P G Q++ G P P
Sbjct: 109 PPSPM---DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSG----------PGGAPLD 155
Query: 259 GPPQQYSGQEDYYGDQYSHGGQGP-PEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDS 317
G Q GQ++ +GP P NQ + Q +Y +P D
Sbjct: 156 GADPQALGQQN----------RGPTPFNQNQLH------QLRAQIMAYKMLARGQPLPDH 199
Query: 318 SQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYP 377
Q +G G QQ PPP PG PG G GP GPGP P
Sbjct: 200 LQMAVQGKRPMPGMQQQMPTLPPPS-----VSATGPG----PGPGPGPGP---GPGPAPP 247
Query: 378 NYPQGQGQQYGGYRPTQPGPP--------QPPQQRPYGYDQGQYGN 415
NY + G GG PGP QPP P + +G N
Sbjct: 248 NYSRPHGM--GGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMAN 291
Score = 43.9 bits (102), Expect = 3e-04
Identities = 64/255 (25%), Positives = 82/255 (32%), Gaps = 57/255 (22%)
Query: 27 DNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMG 86
DN H + M+S ++ S+ +Y QM + M M
Sbjct: 67 DNMHQMHKPMESMHEKGMSDDPRYNQM---------------------------KGMGMR 99
Query: 87 PGGMNQSGPPPPP-----RSHNMPSDGMVGGGPPAPHMQNQMNGQM-PGPNHMPMQGPGP 140
GG GPPP P + + P G P P QM GP P+ G P
Sbjct: 100 SGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADP 159
Query: 141 NQLNMTNS-----SMNMPSSSHGSMGGY-----NHSVPSSQSMPVQNQMTMSQGQPMGNY 190
L N + N + Y +P M VQ + M Q
Sbjct: 160 QALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPT 219
Query: 191 GPRPNMSMQ-----PNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMM 245
P P++S P GP P Y+ P G G PP G G V G M
Sbjct: 220 LPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMG---GPNMPPPGPSG-VPPG--MP 273
Query: 246 GQRQIPPYRPPQQGP 260
GQ PP PP+ P
Sbjct: 274 GQ---PPGGPPKPWP 285
Score = 43.1 bits (100), Expect = 5e-04
Identities = 78/324 (24%), Positives = 98/324 (30%), Gaps = 53/324 (16%)
Query: 67 SNQNMQSLLPAPPTQNMPM---GPGGMNQSGPPPPPRSHNM--PSDGMVGGGPPAPHMQN 121
S +M P PP+ P+ GPGG P H M P + M G N
Sbjct: 38 SAHSMMGPSPGPPSAGHPIPTQGPGGY------PQDNMHQMHKPMESMHEKGMSDDPRYN 91
Query: 122 QMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHS---VPSSQSMPVQNQ 178
QM G G G GP M S PS +GG H+ VP+S
Sbjct: 92 QMKGM--GMRSGGHAGMGPPPSPMDQHSQGYPSP----LGGSEHASSPVPASGPSSGPQM 145
Query: 179 MTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQV 238
+ G P+ G P Q N+GP Q Q + QP +
Sbjct: 146 SSGPGGAPLD--GADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMA 203
Query: 239 NQGNHMMG--QRQIPPYRPPQ-----------QGPPQQYSGQEDYYGDQYSHGGQGPPEG 285
QG M Q+Q+P PP GP Y + GG P
Sbjct: 204 VQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMP-- 261
Query: 286 MNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQ---------YGQQQDAY 336
P G + P P G +P+ + S G+ A
Sbjct: 262 ------PPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAP 315
Query: 337 QGPPPQQG-YPPQQQQYPGQQGYP 359
PP P Q Q PGQ P
Sbjct: 316 PAVPPAASPVMPPQTQSPGQPAQP 339
Score = 42.7 bits (99), Expect = 6e-04
Identities = 40/137 (29%), Positives = 50/137 (36%), Gaps = 23/137 (16%)
Query: 76 PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
PAPP + P G GG N PPP P G GGPP P
Sbjct: 244 PAPPNYSRPHGMGGPNM--PPPGPSGVPPGMPGQPPGGPPKPW----------------P 285
Query: 136 QGPGPNQLNMTNSSMNM-PSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRP 194
+GP N T++ + P G +VP + S PV T S GQP P P
Sbjct: 286 EGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAAS-PVMPPQTQSPGQPA---QPAP 341
Query: 195 NMSMQPNQGPMMHQQPP 211
+ + Q + Q P
Sbjct: 342 MVPLHQKQSRITPIQKP 358
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 67.4 bits (163), Expect = 2e-11
Identities = 101/346 (29%), Positives = 124/346 (35%), Gaps = 81/346 (23%)
Query: 88 GGMNQSGPPPPPRSHNMPSDGMV-GGGP-PAPHMQNQMNGQMPGP----NHMPMQGPGP- 140
GG + GP P P PS G + G P P+P + M G PGP + +P QGPG
Sbjct: 9 GGTPRPGPSPGPG----PSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64
Query: 141 NQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQP 200
Q NM M+ P S G P NQM +G M + G + M P
Sbjct: 65 PQDNM--HQMHKPMESMHEKG--------MSDDPRYNQM---KGMGMRSGG---HAGMGP 108
Query: 201 NQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG--QVNQGNHMMGQRQIPPYRPPQQ 258
PM SQ Y P GG +H P G Q++ G P P
Sbjct: 109 PPSPM---DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSG----------PGGAPLD 155
Query: 259 GPPQQYSGQEDYYGDQYSHGGQGP-PEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDS 317
G Q GQ++ +GP P NQ + Q +Y +P D
Sbjct: 156 GADPQALGQQN----------RGPTPFNQNQLH------QLRAQIMAYKMLARGQPLPDH 199
Query: 318 SQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYP 377
Q +G G QQ PPP PG PG G GP GPGP P
Sbjct: 200 LQMAVQGKRPMPGMQQQMPTLPPPS-----VSATGPG----PGPGPGPGP---GPGPAPP 247
Query: 378 NYPQGQGQQYGGYRPTQPGPP--------QPPQQRPYGYDQGQYGN 415
NY + G GG PGP QPP P + +G N
Sbjct: 248 NYSRPHGM--GGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMAN 291
Score = 43.9 bits (102), Expect = 3e-04
Identities = 64/255 (25%), Positives = 82/255 (32%), Gaps = 57/255 (22%)
Query: 27 DNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMG 86
DN H + M+S ++ S+ +Y QM + M M
Sbjct: 67 DNMHQMHKPMESMHEKGMSDDPRYNQM---------------------------KGMGMR 99
Query: 87 PGGMNQSGPPPPP-----RSHNMPSDGMVGGGPPAPHMQNQMNGQM-PGPNHMPMQGPGP 140
GG GPPP P + + P G P P QM GP P+ G P
Sbjct: 100 SGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADP 159
Query: 141 NQLNMTNS-----SMNMPSSSHGSMGGY-----NHSVPSSQSMPVQNQMTMSQGQPMGNY 190
L N + N + Y +P M VQ + M Q
Sbjct: 160 QALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPT 219
Query: 191 GPRPNMSMQ-----PNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMM 245
P P++S P GP P Y+ P G G PP G G V G M
Sbjct: 220 LPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMG---GPNMPPPGPSG-VPPG--MP 273
Query: 246 GQRQIPPYRPPQQGP 260
GQ PP PP+ P
Sbjct: 274 GQ---PPGGPPKPWP 285
Score = 43.1 bits (100), Expect = 5e-04
Identities = 78/324 (24%), Positives = 98/324 (30%), Gaps = 53/324 (16%)
Query: 67 SNQNMQSLLPAPPTQNMPM---GPGGMNQSGPPPPPRSHNM--PSDGMVGGGPPAPHMQN 121
S +M P PP+ P+ GPGG P H M P + M G N
Sbjct: 38 SAHSMMGPSPGPPSAGHPIPTQGPGGY------PQDNMHQMHKPMESMHEKGMSDDPRYN 91
Query: 122 QMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHS---VPSSQSMPVQNQ 178
QM G G G GP M S PS +GG H+ VP+S
Sbjct: 92 QMKGM--GMRSGGHAGMGPPPSPMDQHSQGYPSP----LGGSEHASSPVPASGPSSGPQM 145
Query: 179 MTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQV 238
+ G P+ G P Q N+GP Q Q + QP +
Sbjct: 146 SSGPGGAPLD--GADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMA 203
Query: 239 NQGNHMMG--QRQIPPYRPPQ-----------QGPPQQYSGQEDYYGDQYSHGGQGPPEG 285
QG M Q+Q+P PP GP Y + GG P
Sbjct: 204 VQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMP-- 261
Query: 286 MNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQ---------YGQQQDAY 336
P G + P P G +P+ + S G+ A
Sbjct: 262 ------PPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAP 315
Query: 337 QGPPPQQG-YPPQQQQYPGQQGYP 359
PP P Q Q PGQ P
Sbjct: 316 PAVPPAASPVMPPQTQSPGQPAQP 339
Score = 42.7 bits (99), Expect = 6e-04
Identities = 40/137 (29%), Positives = 50/137 (36%), Gaps = 23/137 (16%)
Query: 76 PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
PAPP + P G GG N PPP P G GGPP P
Sbjct: 244 PAPPNYSRPHGMGGPNM--PPPGPSGVPPGMPGQPPGGPPKPW----------------P 285
Query: 136 QGPGPNQLNMTNSSMNM-PSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRP 194
+GP N T++ + P G +VP + S PV T S GQP P P
Sbjct: 286 EGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAAS-PVMPPQTQSPGQPA---QPAP 341
Query: 195 NMSMQPNQGPMMHQQPP 211
+ + Q + Q P
Sbjct: 342 MVPLHQKQSRITPIQKP 358
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 67.4 bits (163), Expect = 2e-11
Identities = 101/346 (29%), Positives = 124/346 (35%), Gaps = 81/346 (23%)
Query: 88 GGMNQSGPPPPPRSHNMPSDGMV-GGGP-PAPHMQNQMNGQMPGP----NHMPMQGPGP- 140
GG + GP P P PS G + G P P+P + M G PGP + +P QGPG
Sbjct: 9 GGTPRPGPSPGPG----PSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64
Query: 141 NQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQP 200
Q NM M+ P S G P NQM +G M + G + M P
Sbjct: 65 PQDNM--HQMHKPMESMHEKG--------MSDDPRYNQM---KGMGMRSGG---HAGMGP 108
Query: 201 NQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG--QVNQGNHMMGQRQIPPYRPPQQ 258
PM SQ Y P GG +H P G Q++ G P P
Sbjct: 109 PPSPM---DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSG----------PGGAPLD 155
Query: 259 GPPQQYSGQEDYYGDQYSHGGQGP-PEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDS 317
G Q GQ++ +GP P NQ + Q +Y +P D
Sbjct: 156 GADPQALGQQN----------RGPTPFNQNQLH------QLRAQIMAYKMLARGQPLPDH 199
Query: 318 SQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYP 377
Q +G G QQ PPP PG PG G GP GPGP P
Sbjct: 200 LQMAVQGKRPMPGMQQQMPTLPPPS-----VSATGPG----PGPGPGPGP---GPGPAPP 247
Query: 378 NYPQGQGQQYGGYRPTQPGPP--------QPPQQRPYGYDQGQYGN 415
NY + G GG PGP QPP P + +G N
Sbjct: 248 NYSRPHGM--GGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMAN 291
Score = 43.9 bits (102), Expect = 3e-04
Identities = 64/255 (25%), Positives = 82/255 (32%), Gaps = 57/255 (22%)
Query: 27 DNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMG 86
DN H + M+S ++ S+ +Y QM + M M
Sbjct: 67 DNMHQMHKPMESMHEKGMSDDPRYNQM---------------------------KGMGMR 99
Query: 87 PGGMNQSGPPPPP-----RSHNMPSDGMVGGGPPAPHMQNQMNGQM-PGPNHMPMQGPGP 140
GG GPPP P + + P G P P QM GP P+ G P
Sbjct: 100 SGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADP 159
Query: 141 NQLNMTNS-----SMNMPSSSHGSMGGY-----NHSVPSSQSMPVQNQMTMSQGQPMGNY 190
L N + N + Y +P M VQ + M Q
Sbjct: 160 QALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPT 219
Query: 191 GPRPNMSMQ-----PNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMM 245
P P++S P GP P Y+ P G G PP G G V G M
Sbjct: 220 LPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMG---GPNMPPPGPSG-VPPG--MP 273
Query: 246 GQRQIPPYRPPQQGP 260
GQ PP PP+ P
Sbjct: 274 GQ---PPGGPPKPWP 285
Score = 43.1 bits (100), Expect = 5e-04
Identities = 78/324 (24%), Positives = 98/324 (30%), Gaps = 53/324 (16%)
Query: 67 SNQNMQSLLPAPPTQNMPM---GPGGMNQSGPPPPPRSHNM--PSDGMVGGGPPAPHMQN 121
S +M P PP+ P+ GPGG P H M P + M G N
Sbjct: 38 SAHSMMGPSPGPPSAGHPIPTQGPGGY------PQDNMHQMHKPMESMHEKGMSDDPRYN 91
Query: 122 QMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHS---VPSSQSMPVQNQ 178
QM G G G GP M S PS +GG H+ VP+S
Sbjct: 92 QMKGM--GMRSGGHAGMGPPPSPMDQHSQGYPSP----LGGSEHASSPVPASGPSSGPQM 145
Query: 179 MTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQV 238
+ G P+ G P Q N+GP Q Q + QP +
Sbjct: 146 SSGPGGAPLD--GADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMA 203
Query: 239 NQGNHMMG--QRQIPPYRPPQ-----------QGPPQQYSGQEDYYGDQYSHGGQGPPEG 285
QG M Q+Q+P PP GP Y + GG P
Sbjct: 204 VQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMP-- 261
Query: 286 MNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQ---------YGQQQDAY 336
P G + P P G +P+ + S G+ A
Sbjct: 262 ------PPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAP 315
Query: 337 QGPPPQQG-YPPQQQQYPGQQGYP 359
PP P Q Q PGQ P
Sbjct: 316 PAVPPAASPVMPPQTQSPGQPAQP 339
Score = 42.7 bits (99), Expect = 6e-04
Identities = 40/137 (29%), Positives = 50/137 (36%), Gaps = 23/137 (16%)
Query: 76 PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
PAPP + P G GG N PPP P G GGPP P
Sbjct: 244 PAPPNYSRPHGMGGPNM--PPPGPSGVPPGMPGQPPGGPPKPW----------------P 285
Query: 136 QGPGPNQLNMTNSSMNM-PSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRP 194
+GP N T++ + P G +VP + S PV T S GQP P P
Sbjct: 286 EGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAAS-PVMPPQTQSPGQPA---QPAP 341
Query: 195 NMSMQPNQGPMMHQQPP 211
+ + Q + Q P
Sbjct: 342 MVPLHQKQSRITPIQKP 358
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 67.4 bits (163), Expect = 2e-11
Identities = 101/346 (29%), Positives = 124/346 (35%), Gaps = 81/346 (23%)
Query: 88 GGMNQSGPPPPPRSHNMPSDGMV-GGGP-PAPHMQNQMNGQMPGP----NHMPMQGPGP- 140
GG + GP P P PS G + G P P+P + M G PGP + +P QGPG
Sbjct: 9 GGTPRPGPSPGPG----PSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64
Query: 141 NQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQP 200
Q NM M+ P S G P NQM +G M + G + M P
Sbjct: 65 PQDNM--HQMHKPMESMHEKG--------MSDDPRYNQM---KGMGMRSGG---HAGMGP 108
Query: 201 NQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG--QVNQGNHMMGQRQIPPYRPPQQ 258
PM SQ Y P GG +H P G Q++ G P P
Sbjct: 109 PPSPM---DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSG----------PGGAPLD 155
Query: 259 GPPQQYSGQEDYYGDQYSHGGQGP-PEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDS 317
G Q GQ++ +GP P NQ + Q +Y +P D
Sbjct: 156 GADPQALGQQN----------RGPTPFNQNQLH------QLRAQIMAYKMLARGQPLPDH 199
Query: 318 SQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYP 377
Q +G G QQ PPP PG PG G GP GPGP P
Sbjct: 200 LQMAVQGKRPMPGMQQQMPTLPPPS-----VSATGPG----PGPGPGPGP---GPGPAPP 247
Query: 378 NYPQGQGQQYGGYRPTQPGPP--------QPPQQRPYGYDQGQYGN 415
NY + G GG PGP QPP P + +G N
Sbjct: 248 NYSRPHGM--GGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMAN 291
Score = 43.9 bits (102), Expect = 3e-04
Identities = 64/255 (25%), Positives = 82/255 (32%), Gaps = 57/255 (22%)
Query: 27 DNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMG 86
DN H + M+S ++ S+ +Y QM + M M
Sbjct: 67 DNMHQMHKPMESMHEKGMSDDPRYNQM---------------------------KGMGMR 99
Query: 87 PGGMNQSGPPPPP-----RSHNMPSDGMVGGGPPAPHMQNQMNGQM-PGPNHMPMQGPGP 140
GG GPPP P + + P G P P QM GP P+ G P
Sbjct: 100 SGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADP 159
Query: 141 NQLNMTNS-----SMNMPSSSHGSMGGY-----NHSVPSSQSMPVQNQMTMSQGQPMGNY 190
L N + N + Y +P M VQ + M Q
Sbjct: 160 QALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPT 219
Query: 191 GPRPNMSMQ-----PNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMM 245
P P++S P GP P Y+ P G G PP G G V G M
Sbjct: 220 LPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMG---GPNMPPPGPSG-VPPG--MP 273
Query: 246 GQRQIPPYRPPQQGP 260
GQ PP PP+ P
Sbjct: 274 GQ---PPGGPPKPWP 285
Score = 43.1 bits (100), Expect = 5e-04
Identities = 78/324 (24%), Positives = 98/324 (30%), Gaps = 53/324 (16%)
Query: 67 SNQNMQSLLPAPPTQNMPM---GPGGMNQSGPPPPPRSHNM--PSDGMVGGGPPAPHMQN 121
S +M P PP+ P+ GPGG P H M P + M G N
Sbjct: 38 SAHSMMGPSPGPPSAGHPIPTQGPGGY------PQDNMHQMHKPMESMHEKGMSDDPRYN 91
Query: 122 QMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHS---VPSSQSMPVQNQ 178
QM G G G GP M S PS +GG H+ VP+S
Sbjct: 92 QMKGM--GMRSGGHAGMGPPPSPMDQHSQGYPSP----LGGSEHASSPVPASGPSSGPQM 145
Query: 179 MTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQV 238
+ G P+ G P Q N+GP Q Q + QP +
Sbjct: 146 SSGPGGAPLD--GADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMA 203
Query: 239 NQGNHMMG--QRQIPPYRPPQ-----------QGPPQQYSGQEDYYGDQYSHGGQGPPEG 285
QG M Q+Q+P PP GP Y + GG P
Sbjct: 204 VQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMP-- 261
Query: 286 MNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQ---------YGQQQDAY 336
P G + P P G +P+ + S G+ A
Sbjct: 262 ------PPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAP 315
Query: 337 QGPPPQQG-YPPQQQQYPGQQGYP 359
PP P Q Q PGQ P
Sbjct: 316 PAVPPAASPVMPPQTQSPGQPAQP 339
Score = 42.7 bits (99), Expect = 6e-04
Identities = 40/137 (29%), Positives = 50/137 (36%), Gaps = 23/137 (16%)
Query: 76 PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
PAPP + P G GG N PPP P G GGPP P
Sbjct: 244 PAPPNYSRPHGMGGPNM--PPPGPSGVPPGMPGQPPGGPPKPW----------------P 285
Query: 136 QGPGPNQLNMTNSSMNM-PSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRP 194
+GP N T++ + P G +VP + S PV T S GQP P P
Sbjct: 286 EGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAAS-PVMPPQTQSPGQPA---QPAP 341
Query: 195 NMSMQPNQGPMMHQQPP 211
+ + Q + Q P
Sbjct: 342 MVPLHQKQSRITPIQKP 358
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 67.4 bits (163), Expect = 2e-11
Identities = 101/346 (29%), Positives = 124/346 (35%), Gaps = 81/346 (23%)
Query: 88 GGMNQSGPPPPPRSHNMPSDGMV-GGGP-PAPHMQNQMNGQMPGP----NHMPMQGPGP- 140
GG + GP P P PS G + G P P+P + M G PGP + +P QGPG
Sbjct: 9 GGTPRPGPSPGPG----PSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPIPTQGPGGY 64
Query: 141 NQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQP 200
Q NM M+ P S G P NQM +G M + G + M P
Sbjct: 65 PQDNM--HQMHKPMESMHEKG--------MSDDPRYNQM---KGMGMRSGG---HAGMGP 108
Query: 201 NQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG--QVNQGNHMMGQRQIPPYRPPQQ 258
PM SQ Y P GG +H P G Q++ G P P
Sbjct: 109 PPSPM---DQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSG----------PGGAPLD 155
Query: 259 GPPQQYSGQEDYYGDQYSHGGQGP-PEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDS 317
G Q GQ++ +GP P NQ + Q +Y +P D
Sbjct: 156 GADPQALGQQN----------RGPTPFNQNQLH------QLRAQIMAYKMLARGQPLPDH 199
Query: 318 SQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYP 377
Q +G G QQ PPP PG PG G GP GPGP P
Sbjct: 200 LQMAVQGKRPMPGMQQQMPTLPPPS-----VSATGPG----PGPGPGPGP---GPGPAPP 247
Query: 378 NYPQGQGQQYGGYRPTQPGPP--------QPPQQRPYGYDQGQYGN 415
NY + G GG PGP QPP P + +G N
Sbjct: 248 NYSRPHGM--GGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMAN 291
Score = 43.9 bits (102), Expect = 3e-04
Identities = 64/255 (25%), Positives = 82/255 (32%), Gaps = 57/255 (22%)
Query: 27 DNNHLIQCIMDSQNKGKTSECSQYQQMLHTNLVYLATIADSNQNMQSLLPAPPTQNMPMG 86
DN H + M+S ++ S+ +Y QM + M M
Sbjct: 67 DNMHQMHKPMESMHEKGMSDDPRYNQM---------------------------KGMGMR 99
Query: 87 PGGMNQSGPPPPP-----RSHNMPSDGMVGGGPPAPHMQNQMNGQM-PGPNHMPMQGPGP 140
GG GPPP P + + P G P P QM GP P+ G P
Sbjct: 100 SGGHAGMGPPPSPMDQHSQGYPSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGADP 159
Query: 141 NQLNMTNS-----SMNMPSSSHGSMGGY-----NHSVPSSQSMPVQNQMTMSQGQPMGNY 190
L N + N + Y +P M VQ + M Q
Sbjct: 160 QALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPT 219
Query: 191 GPRPNMSMQ-----PNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMM 245
P P++S P GP P Y+ P G G PP G G V G M
Sbjct: 220 LPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMG---GPNMPPPGPSG-VPPG--MP 273
Query: 246 GQRQIPPYRPPQQGP 260
GQ PP PP+ P
Sbjct: 274 GQ---PPGGPPKPWP 285
Score = 43.1 bits (100), Expect = 5e-04
Identities = 78/324 (24%), Positives = 98/324 (30%), Gaps = 53/324 (16%)
Query: 67 SNQNMQSLLPAPPTQNMPM---GPGGMNQSGPPPPPRSHNM--PSDGMVGGGPPAPHMQN 121
S +M P PP+ P+ GPGG P H M P + M G N
Sbjct: 38 SAHSMMGPSPGPPSAGHPIPTQGPGGY------PQDNMHQMHKPMESMHEKGMSDDPRYN 91
Query: 122 QMNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHS---VPSSQSMPVQNQ 178
QM G G G GP M S PS +GG H+ VP+S
Sbjct: 92 QMKGM--GMRSGGHAGMGPPPSPMDQHSQGYPSP----LGGSEHASSPVPASGPSSGPQM 145
Query: 179 MTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQV 238
+ G P+ G P Q N+GP Q Q + QP +
Sbjct: 146 SSGPGGAPLD--GADPQALGQQNRGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMA 203
Query: 239 NQGNHMMG--QRQIPPYRPPQ-----------QGPPQQYSGQEDYYGDQYSHGGQGPPEG 285
QG M Q+Q+P PP GP Y + GG P
Sbjct: 204 VQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGPGPGPAPPNYSRPHGMGGPNMP-- 261
Query: 286 MNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQ---------YGQQQDAY 336
P G + P P G +P+ + S G+ A
Sbjct: 262 ------PPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQPTGRPSPAP 315
Query: 337 QGPPPQQG-YPPQQQQYPGQQGYP 359
PP P Q Q PGQ P
Sbjct: 316 PAVPPAASPVMPPQTQSPGQPAQP 339
Score = 42.7 bits (99), Expect = 6e-04
Identities = 40/137 (29%), Positives = 50/137 (36%), Gaps = 23/137 (16%)
Query: 76 PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
PAPP + P G GG N PPP P G GGPP P
Sbjct: 244 PAPPNYSRPHGMGGPNM--PPPGPSGVPPGMPGQPPGGPPKPW----------------P 285
Query: 136 QGPGPNQLNMTNSSMNM-PSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRP 194
+GP N T++ + P G +VP + S PV T S GQP P P
Sbjct: 286 EGPMANAAAPTSTPQKLIPPQPTGRPSPAPPAVPPAAS-PVMPPQTQSPGQPA---QPAP 341
Query: 195 NMSMQPNQGPMMHQQPP 211
+ + Q + Q P
Sbjct: 342 MVPLHQKQSRITPIQKP 358
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 65.9 bits (159), Expect = 7e-11
Identities = 91/333 (27%), Positives = 116/333 (34%), Gaps = 53/333 (15%)
Query: 84 PMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQL 143
P PG M GP P P PS G + G P P G PG H M GP P
Sbjct: 4 PTDPGAMPHPGPSPGPG----PSPGPILGPSPGP-------GPSPGSVH-SMMGPSPGPP 51
Query: 144 NMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQG 203
++++ M S+ G + P + G G P+ M P Q
Sbjct: 52 SVSHPMPTMGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQS 111
Query: 204 PM-MHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQ 262
PM H Q + P G +H + M G PP PP Q P
Sbjct: 112 PMDQHSQGYMSPHPSPLGAPEHV---------------SSPMSGGGPTPPQMPPSQ-PGA 155
Query: 263 QYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYY 322
G S +GP + P + Q +Y +P ++ Q
Sbjct: 156 LIPGDP----QAMSQPNRGP-----SPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAV 206
Query: 323 EGGNSQYG--QQQDAYQGPPPQQGYPPQQQQYPGQQ-GYPGQQQGYGPS------QGGPG 373
+G + G QQQ Q QQ QQQQ P QQ P QQ P+ GPG
Sbjct: 207 QGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPG 266
Query: 374 PQY--PNYPQGQGQQYGGYRPTQPGPP---QPP 401
P+ P+ PQ G RP+ P PP QPP
Sbjct: 267 PELSGPSTPQKLPVPAPGGRPS-PAPPAAAQPP 298
Score = 52.4 bits (124), Expect = 8e-07
Identities = 90/365 (24%), Positives = 112/365 (30%), Gaps = 92/365 (25%)
Query: 76 PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQ------------- 122
P+P + + MGP P PP SH MP+ G H ++
Sbjct: 35 PSPGSVHSMMGPS------PGPPSVSHPMPTMGSTDFPQEGMHQMHKPIDGIHDKGIVED 88
Query: 123 -MNGQMPGPN-HMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNH-SVPSSQSMPVQNQM 179
G M G P G GP Q M S S +G H S P S P QM
Sbjct: 89 IHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQM 148
Query: 180 TMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVN 239
S QP P QPN+GP P + Q Q + G
Sbjct: 149 PPS--QPGALIPGDPQAMSQPNRGP-----SPFSPVQLHQLRAQILAYKMLARGQPLPET 201
Query: 240 QGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYG 299
+ G+R +P + QQ QQ Q+ Q Q PP+ QQ
Sbjct: 202 LQLAVQGKRTLPGLQQQQQ-QQQQQQQQQQQQQQQQQQPQQQPPQPQTQQ---------- 250
Query: 300 YQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYP 359
QQP+ Y+RP GP P+ P Q+ P
Sbjct: 251 QQQPAL--VNYNRP-----------------------SGPGPELSGPSTPQKLP------ 279
Query: 360 GQQQGYGPSQGG-PGPQYPNYPQGQGQQYGGYRPTQPGPPQP--------------PQQR 404
P+ GG P P P Q G QP P QP P Q+
Sbjct: 280 ------VPAPGGRPSPAPPAAAQPPAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQK 333
Query: 405 PYGYD 409
P G D
Sbjct: 334 PQGLD 338
Score = 40.0 bits (92), Expect = 0.004
Identities = 39/165 (23%), Positives = 50/165 (30%), Gaps = 21/165 (12%)
Query: 73 SLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMV------GGGPPAPHMQNQMNGQ 126
S L AP + PM GG PP +P D G P +P +Q+ Q
Sbjct: 126 SPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRGPSPFSPVQLHQLRAQ 185
Query: 127 MPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQP 186
+ + P P L + ++ G Q Q Q Q Q
Sbjct: 186 ILAYKMLARGQPLPETLQLAVQGKR-------TLPGLQQQQQQQQQQQQQQQQQQQQQQQ 238
Query: 187 MGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPP 231
P+P Q QQP YN P G G G P
Sbjct: 239 PQQQPPQPQTQQQ--------QQPALVNYNRPSGPGPELSGPSTP 275
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 65.9 bits (159), Expect = 7e-11
Identities = 91/333 (27%), Positives = 116/333 (34%), Gaps = 53/333 (15%)
Query: 84 PMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPMQGPGPNQL 143
P PG M GP P P PS G + G P P G PG H M GP P
Sbjct: 4 PTDPGAMPHPGPSPGPG----PSPGPILGPSPGP-------GPSPGSVH-SMMGPSPGPP 51
Query: 144 NMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQG 203
++++ M S+ G + P + G G P+ M P Q
Sbjct: 52 SVSHPMPTMGSTDFPQEGMHQMHKPIDGIHDKGIVEDIHCGSMKGTGMRPPHPGMGPPQS 111
Query: 204 PM-MHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQ 262
PM H Q + P G +H + M G PP PP Q P
Sbjct: 112 PMDQHSQGYMSPHPSPLGAPEHV---------------SSPMSGGGPTPPQMPPSQ-PGA 155
Query: 263 QYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYY 322
G S +GP + P + Q +Y +P ++ Q
Sbjct: 156 LIPGDP----QAMSQPNRGP-----SPFSPVQLHQLRAQILAYKMLARGQPLPETLQLAV 206
Query: 323 EGGNSQYG--QQQDAYQGPPPQQGYPPQQQQYPGQQ-GYPGQQQGYGPS------QGGPG 373
+G + G QQQ Q QQ QQQQ P QQ P QQ P+ GPG
Sbjct: 207 QGKRTLPGLQQQQQQQQQQQQQQQQQQQQQQQPQQQPPQPQTQQQQQPALVNYNRPSGPG 266
Query: 374 PQY--PNYPQGQGQQYGGYRPTQPGPP---QPP 401
P+ P+ PQ G RP+ P PP QPP
Sbjct: 267 PELSGPSTPQKLPVPAPGGRPS-PAPPAAAQPP 298
Score = 52.4 bits (124), Expect = 8e-07
Identities = 90/365 (24%), Positives = 112/365 (30%), Gaps = 92/365 (25%)
Query: 76 PAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQ------------- 122
P+P + + MGP P PP SH MP+ G H ++
Sbjct: 35 PSPGSVHSMMGPS------PGPPSVSHPMPTMGSTDFPQEGMHQMHKPIDGIHDKGIVED 88
Query: 123 -MNGQMPGPN-HMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNH-SVPSSQSMPVQNQM 179
G M G P G GP Q M S S +G H S P S P QM
Sbjct: 89 IHCGSMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGGPTPPQM 148
Query: 180 TMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVN 239
S QP P QPN+GP P + Q Q + G
Sbjct: 149 PPS--QPGALIPGDPQAMSQPNRGP-----SPFSPVQLHQLRAQILAYKMLARGQPLPET 201
Query: 240 QGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYG 299
+ G+R +P + QQ QQ Q+ Q Q PP+ QQ
Sbjct: 202 LQLAVQGKRTLPGLQQQQQ-QQQQQQQQQQQQQQQQQQPQQQPPQPQTQQ---------- 250
Query: 300 YQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYP 359
QQP+ Y+RP GP P+ P Q+ P
Sbjct: 251 QQQPAL--VNYNRP-----------------------SGPGPELSGPSTPQKLP------ 279
Query: 360 GQQQGYGPSQGG-PGPQYPNYPQGQGQQYGGYRPTQPGPPQP--------------PQQR 404
P+ GG P P P Q G QP P QP P Q+
Sbjct: 280 ------VPAPGGRPSPAPPAAAQPPAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQK 333
Query: 405 PYGYD 409
P G D
Sbjct: 334 PQGLD 338
Score = 40.0 bits (92), Expect = 0.004
Identities = 39/165 (23%), Positives = 50/165 (30%), Gaps = 21/165 (12%)
Query: 73 SLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMV------GGGPPAPHMQNQMNGQ 126
S L AP + PM GG PP +P D G P +P +Q+ Q
Sbjct: 126 SPLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRGPSPFSPVQLHQLRAQ 185
Query: 127 MPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQP 186
+ + P P L + ++ G Q Q Q Q Q
Sbjct: 186 ILAYKMLARGQPLPETLQLAVQGKR-------TLPGLQQQQQQQQQQQQQQQQQQQQQQQ 238
Query: 187 MGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPP 231
P+P Q QQP YN P G G G P
Sbjct: 239 PQQQPPQPQTQQQ--------QQPALVNYNRPSGPGPELSGPSTP 275
>gi|151301053 RNA binding motif protein 33 [Homo sapiens]
Length = 1170
Score = 65.9 bits (159), Expect = 7e-11
Identities = 89/360 (24%), Positives = 126/360 (35%), Gaps = 44/360 (12%)
Query: 83 MPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHM--QNQMNGQMPGPNHMPMQGPGP 140
+P P + Q+ PPPPP P + P P + Q+ + P HMP Q P
Sbjct: 309 LPTQPPVVPQAPPPPPPPPQQQPIRSLFQPQPLQPLLPVQHPHHPSPPQGMHMPPQLETP 368
Query: 141 NQLNMTNSSMN--MPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSM 198
+ MT + P + H N + PVQ + QP GP+
Sbjct: 369 RMM-MTPPPVTPQQPKNIH-----INPHFKGTVVTPVQVPLLPVPSQPRPAVGPQRFPG- 421
Query: 199 QPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPP---------MGMMGQVNQGNHMMGQRQ 249
P + P P ++ P Q + PP +G+ G+ +H+ +++
Sbjct: 422 -PPEFPQHTPGPVPNSFSQPPRLPLQDQWRAPPPPQDRDPFFLGVSGEPRFPSHLFLEQR 480
Query: 250 IPPYRPP-------QQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYP--DGHNDYGY 300
PP PP P Q G ++ GQ P + P G
Sbjct: 481 SPPPPPPPPTLLNSSHPVPTQSPLPFTQPGPAFNQQGQQPVFPRERPVRPALQPPGPVGI 540
Query: 301 QQPSYPEQGYDRPYEDSSQHYYEGGNSQY--GQQQDAYQGP------PPQQGYPPQQQQY 352
S P RP+ Q + G + Q QGP PP Q P Q QQ
Sbjct: 541 LHFSQPGSATTRPFIPPRQPFLPGPGQPFLPTHTQPNLQGPLHPPLPPPHQPQPQQPQQQ 600
Query: 353 PGQQGYPGQQQGYGPS-QGGPGPQYP--NYPQGQGQQYGGYRPTQPGPPQP---PQQRPY 406
P Q P Q + P Q P PQ+P + PQ Q + + P P P PQ RP+
Sbjct: 601 PPPQHQPPHQPPHQPPPQHQPPPQHPPQHPPQHQHHHHHHHLSVPPPPLMPMSQPQFRPH 660
Score = 32.3 bits (72), Expect = 0.82
Identities = 33/143 (23%), Positives = 50/143 (34%), Gaps = 17/143 (11%)
Query: 72 QSLLPAP-----PTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQ 126
Q LP P PT P G ++ PPP P PP H
Sbjct: 559 QPFLPGPGQPFLPTHTQPNLQGPLHPPLPPPHQPQPQQPQQQ-----PPPQHQPPHQPPH 613
Query: 127 MPGPNHM-----PMQGPGPNQLNMTNSSMNMPSSSHGSMG--GYNHSVPSSQSMPVQNQM 179
P P H P Q P +Q + + +++P M + V ++Q ++M
Sbjct: 614 QPPPQHQPPPQHPPQHPPQHQHHHHHHHLSVPPPPLMPMSQPQFRPHVQTAQPQASSSRM 673
Query: 180 TMSQGQPMGNYGPRPNMSMQPNQ 202
Q Q + + N+S +P Q
Sbjct: 674 QCPQRQGLRHNTTSQNVSKRPMQ 696
>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
[Homo sapiens]
Length = 526
Score = 65.1 bits (157), Expect = 1e-10
Identities = 76/285 (26%), Positives = 96/285 (33%), Gaps = 36/285 (12%)
Query: 146 TNSSMNMPSSSHGS---MGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPNQ 202
+N + S+G+ G +S SSQ Q+ SQ YG S +Q
Sbjct: 3 SNDYTQQATQSYGAYPTQPGQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQSQ 62
Query: 203 GPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQ 262
Q Q Y G Y Q GQ Q P Y QQ P
Sbjct: 63 NTGYGTQSTPQGYGSTGG----YGSSQSSQSSYGQ---------QSSYPGYG--QQPAPS 107
Query: 263 QYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSY-PEQGYDRPYEDSSQHY 321
SG YG G P+ + P YG QQ SY +Q Y+ P Q+
Sbjct: 108 STSGS---YGSSSQSSSYGQPQSGSYSQQPS----YGGQQQSYGQQQSYNPPQGYGQQNQ 160
Query: 322 YE---------GGNSQYGQQQDAYQ-GPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGG 371
Y GG YGQ Q + G GY Q Q G G GQQ G +GG
Sbjct: 161 YNSSSGGGGGGGGGGNYGQDQSSMSSGGGSGGGYGNQDQSGGGGSGGYGQQDRGGRGRGG 220
Query: 372 PGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNY 416
G G + GGY P G + + G D+G + +
Sbjct: 221 SGGGGGGGGGGYNRSSGGYEPRGRGGGRGGRGGMGGSDRGGFNKF 265
Score = 61.2 bits (147), Expect = 2e-09
Identities = 72/236 (30%), Positives = 77/236 (32%), Gaps = 47/236 (19%)
Query: 185 QPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNHM 244
Q +YG P QP QG + Q SQ Y G Q Y G G
Sbjct: 9 QATQSYGAYPT---QPGQG---YSQQSSQPY-----GQQSYSGYSQSTDTSGYGQSSYSS 57
Query: 245 MGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPS 304
GQ Q Y Q PQ Y Y Q S G QQ S
Sbjct: 58 YGQSQNTGYGT--QSTPQGYGSTGGYGSSQSSQSSYG-------------------QQSS 96
Query: 305 YPEQGYD-RPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQ 363
YP G P S + +S YGQ PQ G QQ Y GQQ GQQQ
Sbjct: 97 YPGYGQQPAPSSTSGSYGSSSQSSSYGQ---------PQSGSYSQQPSYGGQQQSYGQQQ 147
Query: 364 GYGPSQG-GPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYGNYQQ 418
Y P QG G QY + G G GG Q G G YGN Q
Sbjct: 148 SYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQ----DQSSMSSGGGSGGGYGNQDQ 199
Score = 41.6 bits (96), Expect = 0.001
Identities = 62/221 (28%), Positives = 74/221 (33%), Gaps = 26/221 (11%)
Query: 66 DSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHN--MPSDGMVGGGPPAPHMQNQM 123
D Q A PTQ G G QS P +S++ S G G + Q
Sbjct: 5 DYTQQATQSYGAYPTQP---GQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQS 61
Query: 124 NGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHS-VPSSQSMPV-QNQMTM 181
G P QG G ++ S S GY PSS S + +
Sbjct: 62 QNTGYGTQSTP-QGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSS 120
Query: 182 SQGQPM-GNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQ 240
S GQP G+Y S QP+ G Q YN PQG GQ Q G G
Sbjct: 121 SYGQPQSGSY------SQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGG 174
Query: 241 GNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQG 281
GN+ GQ Q G YG+Q GG G
Sbjct: 175 GNY--GQ---------DQSSMSSGGGSGGGYGNQDQSGGGG 204
>gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens]
Length = 166
Score = 64.7 bits (156), Expect = 1e-10
Identities = 63/145 (43%), Positives = 67/145 (46%), Gaps = 40/145 (27%)
Query: 280 QGPPEGMNQQYYP---DGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAY 336
QGPP G QQ P DG+ D G QQ P+QG GQQQ
Sbjct: 47 QGPPLG-GQQSQPSAGDGNQDDGPQQGP-PQQG--------------------GQQQ--- 81
Query: 337 QGPPPQQGYPPQQQQYPGQQGYPGQQQG--YGPSQGGPGPQYP-NYPQGQGQQYG---GY 390
QGPPP QG P Q P Q G+P QG GP Q G P+ P PQG QQ G G
Sbjct: 82 QGPPPPQGKP---QGPPQQGGHPPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGP 138
Query: 391 RPTQPGPPQ-PPQQ--RPYGYDQGQ 412
P PG PQ PP Q RP G QGQ
Sbjct: 139 PPPPPGKPQGPPPQGGRPQGPPQGQ 163
Score = 52.4 bits (124), Expect = 8e-07
Identities = 48/142 (33%), Positives = 54/142 (38%), Gaps = 39/142 (27%)
Query: 183 QGQPMGNYGPRP-----NMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGM-MG 236
QG P+G +P N P QGP PQ GGQ QG PP G G
Sbjct: 47 QGPPLGGQQSQPSAGDGNQDDGPQQGP-------------PQQGGQQQQGPPPPQGKPQG 93
Query: 237 QVNQGNH---MMGQRQIPPY-----RPPQ---QGPPQQYSGQEDYYGDQYSHGGQGPPEG 285
QG H G+ Q PP RPP+ QGPPQQ Q+ G PP G
Sbjct: 94 PPQQGGHPPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQ---------GPPPPPPG 144
Query: 286 MNQQYYPDGHNDYGYQQPSYPE 307
Q P G G Q P+
Sbjct: 145 KPQGPPPQGGRPQGPPQGQSPQ 166
Score = 34.7 bits (78), Expect = 0.17
Identities = 26/71 (36%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Query: 78 PPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQN-----QMNGQMPGPNH 132
PP Q P GP Q G PPPP+ P GG P P Q G GP
Sbjct: 85 PPPQGKPQGP--PQQGGHPPPPQGR--PQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPP 140
Query: 133 MP---MQGPGP 140
P QGP P
Sbjct: 141 PPPGKPQGPPP 151
Score = 32.7 bits (73), Expect = 0.63
Identities = 25/67 (37%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
Query: 78 PPTQNMPMGPGGMNQSGPPPPPRS--HNMPSDGMVGGGPPAPHMQNQMNGQMPGPNHMPM 135
PP Q P GP Q G P PPR P G GPP P Q P P
Sbjct: 102 PPPQGRPQGP--PQQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKP---QGPPPQGGRP 156
Query: 136 QGPGPNQ 142
QGP Q
Sbjct: 157 QGPPQGQ 163
Score = 32.3 bits (72), Expect = 0.82
Identities = 28/99 (28%), Positives = 31/99 (31%), Gaps = 8/99 (8%)
Query: 79 PTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQ---MNGQMPGPNHMPM 135
P Q P G Q PPP + P GG PP P + Q G P P
Sbjct: 69 PQQGPPQQGGQQQQGPPPPQGKPQGPPQQ---GGHPPPPQGRPQGPPQQGGHPRPPRGRP 125
Query: 136 QGPGPNQLNMTNSSMNMPSSSHG--SMGGYNHSVPSSQS 172
QGP + P G GG P QS
Sbjct: 126 QGPPQQGGHQQGPPPPPPGKPQGPPPQGGRPQGPPQGQS 164
Score = 32.0 bits (71), Expect = 1.1
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 76 PAPPTQNMPMGPG--GMNQSGPPPPP--RSHNMPSDGMVGGGPP 115
P PP + P GP G +Q GPPPPP + P G GPP
Sbjct: 118 PRPP-RGRPQGPPQQGGHQQGPPPPPPGKPQGPPPQGGRPQGPP 160
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 62.8 bits (151), Expect = 6e-10
Identities = 105/395 (26%), Positives = 142/395 (35%), Gaps = 68/395 (17%)
Query: 76 PAPPTQNMPMG----PGGMNQSGPPPP-----PRSHNMPSD--GMVG-GGPPAPHMQNQM 123
P PP ++ G PG Q+G P P PR P+ G+ G G P
Sbjct: 574 PGPPGEDGERGAEGPPGPTGQAGEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGAKGNVGP 633
Query: 124 NGQMPGP-----NHMPMQGPGPNQLNMTNSSMNMPSS--------SHGSMGGYNHSVPSS 170
G+ PGP NH PGP L T P + S G +G H P+
Sbjct: 634 PGE-PGPPGQQGNHGSQGLPGPQGLIGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTG 692
Query: 171 QSMPVQNQMTMSQGQPMGNYGPRP------NMSMQPNQGPMMHQQPPSQQYNMPQGGGQH 224
+ Q P G GPR N +Q +G P + ++ G Q
Sbjct: 693 EKGA---QGPPGSAGPPGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGFKGDVGLKGDQG 749
Query: 225 Y------QGQQPPMGMMGQVNQGNH-----------MMGQRQIPPYRPPQQGPPQQ--YS 265
+G+ P G GQ Q +G +P Y P + GP +
Sbjct: 750 KPGAPGPRGEDGPEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLPGY-PGRPGPKGSIGFP 808
Query: 266 GQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGG 325
G G++ G G P ++ P + G QP G P D Q G
Sbjct: 809 GPLGPIGEKGKSGKTGQPGLEGERGPPGSRGERG--QPG--ATGQPGPKGDVGQDGAPGI 864
Query: 326 NSQYGQQQDAYQGPP--PQQGYPPQQQQYPGQQGYPGQ--QQGYGPSQGGPGPQYPNYPQ 381
+ G QGPP P PP Q G+ G+PGQ + G+ G PGP PQ
Sbjct: 865 PGEKGLP--GLQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQ 922
Query: 382 GQGQQYG--GYRPTQPGPPQPPQQRPYGYDQGQYG 414
G+ + G G R PGPP PP ++ +G+ G
Sbjct: 923 GKTGEVGPLGER-GPPGPPGPPGEQGLPGLEGREG 956
Score = 56.2 bits (134), Expect = 5e-08
Identities = 96/350 (27%), Positives = 125/350 (35%), Gaps = 69/350 (19%)
Query: 75 LPAPPTQNMPMGP-GGMNQSGPPPPPRSHNMPSDGMVGG-GPPAPHMQNQMNGQMPGPNH 132
LP P + G G + Q GPP DG G GPP P Q PGP
Sbjct: 555 LPGLPGEKGQRGDFGHVGQPGPPG--------EDGERGAEGPPGPTGQ----AGEPGPRG 602
Query: 133 M--PMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNY 190
+ P PGP P + G++G P P Q SQG P
Sbjct: 603 LLGPRGSPGPTGRPGVTGIDGAPGAK-GNVGP-----PGEPGPPGQQGNHGSQGLP---- 652
Query: 191 GPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQ-HYQGQQPPMGMMGQVNQGNHMMGQRQ 249
GP+ + +GP + P +P G + G + P G G QG
Sbjct: 653 GPQGLIGTPGEKGPPGNPGIPG----LPGSDGPLGHPGHEGPTGEKGA--QG-------- 698
Query: 250 IPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQ----QPSY 305
PP P Y G G + G QG + +P D G + +P
Sbjct: 699 -----PPGSAGPPGYPGPRGVKGTSGNRGLQGEKGEKGEDGFPGFKGDVGLKGDQGKPGA 753
Query: 306 P-EQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQG 364
P +G D P EG Q GQ + +GPP G + PG GYPG+
Sbjct: 754 PGPRGEDGP---------EGPKGQAGQAGE--EGPPGSAG-EKGKLGVPGLPGYPGRPGP 801
Query: 365 YGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQGQYG 414
G S G PGP P +G+ + G +P G PP R ++GQ G
Sbjct: 802 KG-SIGFPGPLGPIGEKGKSGKTG--QPGLEGERGPPGSRG---ERGQPG 845
Score = 53.1 bits (126), Expect = 4e-07
Identities = 95/352 (26%), Positives = 120/352 (34%), Gaps = 64/352 (18%)
Query: 84 PMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMPG-PNHMPMQGPGPNQ 142
P PG GP PP P D GPP P +PG P ++GP P
Sbjct: 394 PGAPGPQGVVGPSGPPGPPGFPGDP----GPPGP-------AGLPGIPGIDGIRGP-PGT 441
Query: 143 LNMTNSSMNMPSS-SHGSMGGYNHSVPSSQSMPVQNQMTMSQGQPMGNYGPRPNMSMQPN 201
+ M MP + GS G S +Q+ V Q +S P G G +
Sbjct: 442 VIM------MPFQFAGGSFKGPPVSFQQAQAQAVLQQTQLSMKGPPGPVG------LTGR 489
Query: 202 QGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMGQVNQGNH--MMGQRQIP-------- 251
GP+ P + G Q +G Q P G G+V + G R +P
Sbjct: 490 PGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGD 549
Query: 252 ------PYRPPQQGPPQQYS--GQEDYYGDQYSHGGQGPPEGMNQQYYPDGHNDYGYQQP 303
P P ++G + GQ G+ G +GPP Q P G
Sbjct: 550 RGFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGERGAEGPPGPTGQAGEPGPRGLLG---- 605
Query: 304 SYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQ 363
+G P +G G GPP + G PP QQ G QG PG Q
Sbjct: 606 ---PRGSPGPTGRPGVTGIDGAPGAKGNV-----GPPGEPG-PPGQQGNHGSQGLPGPQG 656
Query: 364 GYG-PSQGGP--GPQYPNYPQGQGQ--QYGGYRPT-QPGPPQPP-QQRPYGY 408
G P + GP P P P G G PT + G PP P GY
Sbjct: 657 LIGTPGEKGPPGNPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGSAGPPGY 708
Score = 48.1 bits (113), Expect = 1e-05
Identities = 91/370 (24%), Positives = 118/370 (31%), Gaps = 53/370 (14%)
Query: 76 PAPPTQNMPMGPGGMN-QSGPPPPPRSHNMPSD----GMVGG----------GPPAPHMQ 120
P P GP G+ GPP P ++ P + G GG GP P +
Sbjct: 979 PGPKGGPGDPGPTGLKGDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGK 1038
Query: 121 NQMNGQMPGPNHMPMQG-PGP-NQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQ 178
G+ P G PGP L ++ PS G G P +
Sbjct: 1039 KGSRGERGPPGPTGKDGIPGPLGPLGPPGAAG--PSGEEGDKGDVG--APGHKGSKGDKG 1094
Query: 179 MTMSQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHY---------QGQQ 229
GQP G GP + G + PP G + + QG
Sbjct: 1095 DAGPPGQP-GIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRGFVGVIGPPGLQGLP 1153
Query: 230 PPMGMMGQVNQGNHMMGQRQIPPYRPPQ-----QGPPQQYSG--QEDYYGDQYSHGGQGP 282
P G G+V M G P R PQ +G P G Q G++ G G
Sbjct: 1154 GPPGEKGEVGDVGSM-GPHGAPGPRGPQGPTGSEGTPGLPGGVGQPGAVGEKGERGDAGD 1212
Query: 283 PEGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDS--SQHYYEGGNSQYGQQQDAYQGPP 340
P P D G + S P P + + +G G D GPP
Sbjct: 1213 PGPPGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVGPTGLPGDL--GPP 1270
Query: 341 PQQGYPPQQQQYPGQQGYPGQQQGYGP-----SQGGPGPQYPNYPQG----QGQQYGGYR 391
G PG++G PG G GP G PGP P G +G++
Sbjct: 1271 GDPGVSGIDGS-PGEKGDPGDVGGPGPPGASGEPGAPGPPGKRGPSGHMGREGREGEKGA 1329
Query: 392 PTQPGPPQPP 401
+PGP PP
Sbjct: 1330 KGEPGPDGPP 1339
Score = 40.4 bits (93), Expect = 0.003
Identities = 85/365 (23%), Positives = 120/365 (32%), Gaps = 54/365 (14%)
Query: 76 PAPP-------TQNMPMGPGGM----NQSGPPPPPRSHNMP-SDGMVGGGPPAPHMQNQM 123
P PP +Q +P GP G+ + GPP P +P SDG +G P +
Sbjct: 637 PGPPGQQGNHGSQGLP-GPQGLIGTPGEKGPPGNPGIPGLPGSDGPLGH-PGHEGPTGEK 694
Query: 124 NGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQ 183
Q P + P PGP + T+ + + G G +Q
Sbjct: 695 GAQGPPGSAGPPGYPGPRGVKGTSGNRGLQGEK-GEKGEDGFPGFKGDVGLKGDQGKPGA 753
Query: 184 GQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQPPMGMMG------- 236
P G GP G ++ + G Y G+ P G +G
Sbjct: 754 PGPRGEDGPEGPKGQAGQAGEEGPPGSAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGP 813
Query: 237 ------QVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGG----------- 279
G + + PP ++G P +GQ GD G
Sbjct: 814 IGEKGKSGKTGQPGLEGERGPPGSRGERGQPGA-TGQPGPKGDVGQDGAPGIPGEKGLPG 872
Query: 280 -QGPP-----EGMNQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQ 333
QGPP +G DG + Q+ QG P + +G + G
Sbjct: 873 LQGPPGFPGPKGPPGHQGKDGRPGHPGQRGELGFQGQTGPPGPAGVLGPQGKTGEVGPLG 932
Query: 334 DAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQG-QGQQYGGYRP 392
+ +GPP G PP +Q PG +G G + GP PGP P G +G P
Sbjct: 933 E--RGPPGPPG-PPGEQGLPGLEGREGAKGELGP----PGPLGKEGPAGLRGFPGPKGGP 985
Query: 393 TQPGP 397
PGP
Sbjct: 986 GDPGP 990
Score = 40.4 bits (93), Expect = 0.003
Identities = 91/367 (24%), Positives = 116/367 (31%), Gaps = 72/367 (19%)
Query: 75 LPAPPTQNMP------MGP-GGMNQSGPPPPPRSHNMPSDGMVGG-GPPAPHMQNQMNGQ 126
LP PP + MGP G GP P S P G+ GG G P + G
Sbjct: 1152 LPGPPGEKGEVGDVGSMGPHGAPGPRGPQGPTGSEGTP--GLPGGVGQPGAVGEKGERGD 1209
Query: 127 M--PGPNHMPMQGPGPNQLNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQNQMTMSQG 184
PGP P PGP G +G S PS + P + +
Sbjct: 1210 AGDPGPPGAPGI-PGPK----------------GDIGEKGDSGPSGAAGPPGKKGPPGED 1252
Query: 185 QPMGNYGPR-----------PNMS-------MQPNQGPMMHQQPPSQQYNMPQGGGQHYQ 226
G+ GP P +S + + G + PP + G
Sbjct: 1253 GAKGSVGPTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDVGGPGPPGAS---GEPGAPGPP 1309
Query: 227 GQQPPMGMMGQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGM 286
G++ P G MG+ + + + P PP + P G G + G GP
Sbjct: 1310 GKRGPSGHMGREGREGEKGAKGEPGPDGPPGRTGPMGARGPPGRVGPEGLRGIPGPVGEP 1369
Query: 287 NQQYYPDGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAYQGPPPQQGYP 346
P G PS G D+ +G G GPP + G
Sbjct: 1370 GLLGAPGQMGPPGPLGPS----GLPGLKGDTGPKGEKGHIGLIG-----LIGPPGEAG-E 1419
Query: 347 PQQQQYPGQQGYPGQQQGYGP-----SQGGPGPQYPNYPQGQGQQYGGYRPTQP------ 395
Q PG QG PG + GP S G PGP P GQ G P
Sbjct: 1420 KGDQGLPGVQGPPGPKGDPGPPGPIGSLGHPGPPGVAGPLGQKGSKGSPGSMGPRGDTGP 1479
Query: 396 -GPPQPP 401
GPP PP
Sbjct: 1480 AGPPGPP 1486
Score = 32.7 bits (73), Expect = 0.63
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 350 QQYPGQQGYPGQQQGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQP------GPPQPPQQ 403
QQ+ G G PG Q GPS G PGP P +P G P P GPP
Sbjct: 388 QQFEGPPGAPGPQGVVGPS-GPPGP--PGFPGDPGPPGPAGLPGIPGIDGIRGPPGTVIM 444
Query: 404 RPYGYDQGQY 413
P+ + G +
Sbjct: 445 MPFQFAGGSF 454
>gi|158966674 proline-rich protein HaeIII subfamily 2 [Homo sapiens]
Length = 166
Score = 62.8 bits (151), Expect = 6e-10
Identities = 62/145 (42%), Positives = 67/145 (46%), Gaps = 40/145 (27%)
Query: 280 QGPPEGMNQQYYP---DGHNDYGYQQPSYPEQGYDRPYEDSSQHYYEGGNSQYGQQQDAY 336
QGPP G QQ P DG+ + G QQ P+QG GQQQ
Sbjct: 47 QGPPLG-GQQSQPSAGDGNQNDGPQQGP-PQQG--------------------GQQQ--- 81
Query: 337 QGPPPQQGYPPQQQQYPGQQGYPGQQQG--YGPSQGGPGPQYP-NYPQGQGQQYG---GY 390
QGPPP QG P Q P Q G+P QG GP Q G P+ P PQG QQ G G
Sbjct: 82 QGPPPPQGKP---QGPPQQGGHPPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQGP 138
Query: 391 RPTQPGPPQ-PPQQ--RPYGYDQGQ 412
P PG PQ PP Q RP G QGQ
Sbjct: 139 PPPPPGKPQGPPPQGGRPQGPPQGQ 163
Score = 45.8 bits (107), Expect = 7e-05
Identities = 49/150 (32%), Positives = 56/150 (37%), Gaps = 43/150 (28%)
Query: 171 QSMPVQNQMTM-SQGQPMGNYGPRPNMSMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQ 229
Q P+ Q + S G N GP+ QGP PQ GGQ QG
Sbjct: 47 QGPPLGGQQSQPSAGDGNQNDGPQ--------QGP-------------PQQGGQQQQGPP 85
Query: 230 PPMGM-MGQVNQGNH---MMGQRQIPPY-----RPPQ---QGPPQQYSGQEDYYGDQYSH 277
PP G G QG H G+ Q PP RPP+ QGPPQQ Q+
Sbjct: 86 PPQGKPQGPPQQGGHPPPPQGRPQGPPQQGGHPRPPRGRPQGPPQQGGHQQ--------- 136
Query: 278 GGQGPPEGMNQQYYPDGHNDYGYQQPSYPE 307
G PP G Q P G G Q P+
Sbjct: 137 GPPPPPPGKPQGPPPQGGRPQGPPQGQSPQ 166
Score = 34.7 bits (78), Expect = 0.17
Identities = 26/71 (36%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Query: 78 PPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQN-----QMNGQMPGPNH 132
PP Q P GP Q G PPPP+ P GG P P Q G GP
Sbjct: 85 PPPQGKPQGP--PQQGGHPPPPQGR--PQGPPQQGGHPRPPRGRPQGPPQQGGHQQGPPP 140
Query: 133 MP---MQGPGP 140
P QGP P
Sbjct: 141 PPPGKPQGPPP 151
Score = 33.1 bits (74), Expect = 0.48
Identities = 32/112 (28%), Positives = 35/112 (31%), Gaps = 14/112 (12%)
Query: 66 DSNQNMQSLLPAPPTQNMPMGPGGMNQSGPPPPPRSHNMPSDGMVGGGPPAPHMQNQ--- 122
D NQN P Q P G Q PPP + P GG PP P + Q
Sbjct: 62 DGNQN------DGPQQGPPQQGGQQQQGPPPPQGKPQGPPQQ---GGHPPPPQGRPQGPP 112
Query: 123 MNGQMPGPNHMPMQGPGPNQLNMTNSSMNMPSSSHG--SMGGYNHSVPSSQS 172
G P P QGP + P G GG P QS
Sbjct: 113 QQGGHPRPPRGRPQGPPQQGGHQQGPPPPPPGKPQGPPPQGGRPQGPPQGQS 164
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.132 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,683,351
Number of Sequences: 37866
Number of extensions: 1966380
Number of successful extensions: 17397
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 908
Number of HSP's that attempted gapping in prelim test: 7905
Number of HSP's gapped (non-prelim): 5354
length of query: 418
length of database: 18,247,518
effective HSP length: 105
effective length of query: 313
effective length of database: 14,271,588
effective search space: 4467007044
effective search space used: 4467007044
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.