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Search of human proteins with 55953131
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55953131 interferon-related developmental regulator 1 [Homo
sapiens]
(451 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55953131 interferon-related developmental regulator 1 [Homo s... 900 0.0
gi|55953129 interferon-related developmental regulator 1 [Homo s... 900 0.0
gi|197333755 interferon-related developmental regulator 2 [Homo ... 426 e-119
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 36 0.062
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 36 0.062
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 34 0.24
gi|119395716 forkhead box C1 [Homo sapiens] 33 0.40
gi|4504849 potassium channel, subfamily K, member 3 [Homo sapiens] 33 0.40
gi|27886561 nuclear factor of activated T-cells, cytoplasmic, ca... 33 0.69
gi|27886559 nuclear factor of activated T-cells, cytoplasmic, ca... 33 0.69
gi|27886555 nuclear factor of activated T-cells, cytoplasmic, ca... 33 0.69
gi|4758804 nuclear factor of activated T-cells, cytoplasmic, cal... 33 0.69
gi|4759276 RNA, U3 small nucleolar interacting protein 2 [Homo s... 32 1.2
gi|13786123 HMG-box transcription factor TCF-3 [Homo sapiens] 32 1.2
gi|13994190 frizzled 8 [Homo sapiens] 32 1.2
gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [... 32 1.5
gi|224458284 Rho GTPase activating protein 23 [Homo sapiens] 31 2.0
gi|24432032 zinc finger protein 503 [Homo sapiens] 31 2.6
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 31 2.6
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 31 2.6
gi|194294523 intersectin 2 isoform 3 [Homo sapiens] 31 2.6
gi|194294521 intersectin 2 isoform 1 [Homo sapiens] 31 2.6
gi|189011568 adenomatous polyposis coli [Homo sapiens] 30 3.4
gi|189011566 adenomatous polyposis coli [Homo sapiens] 30 3.4
gi|53759122 adenomatous polyposis coli [Homo sapiens] 30 3.4
gi|198041755 pre-B-cell leukemia homeobox 3 isoform 2 [Homo sapi... 30 3.4
gi|5453852 pre-B-cell leukemia homeobox 3 isoform 1 [Homo sapiens] 30 3.4
gi|31652242 transcription factor 20 isoform 2 [Homo sapiens] 30 3.4
gi|31652244 transcription factor 20 isoform 1 [Homo sapiens] 30 3.4
gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens] 30 3.4
>gi|55953131 interferon-related developmental regulator 1 [Homo
sapiens]
Length = 451
Score = 900 bits (2326), Expect = 0.0
Identities = 451/451 (100%), Positives = 451/451 (100%)
Query: 1 MPKNKKRNTPHRGSSAGGGGSGAAAATAATAGGQHRNVQPFSDEDASIETMSHCSGYSDP 60
MPKNKKRNTPHRGSSAGGGGSGAAAATAATAGGQHRNVQPFSDEDASIETMSHCSGYSDP
Sbjct: 1 MPKNKKRNTPHRGSSAGGGGSGAAAATAATAGGQHRNVQPFSDEDASIETMSHCSGYSDP 60
Query: 61 SSFAEDGPEVLDEEGTQEDLEYKLKGLIDLTLDKSAKTRQAALEGIKNALASKMLYEFIL 120
SSFAEDGPEVLDEEGTQEDLEYKLKGLIDLTLDKSAKTRQAALEGIKNALASKMLYEFIL
Sbjct: 61 SSFAEDGPEVLDEEGTQEDLEYKLKGLIDLTLDKSAKTRQAALEGIKNALASKMLYEFIL 120
Query: 121 ERRMTLTDSIERCLKKGKSDEQRAAAALASVLCIQLGPGIESEEILKTLGPILKKIICDG 180
ERRMTLTDSIERCLKKGKSDEQRAAAALASVLCIQLGPGIESEEILKTLGPILKKIICDG
Sbjct: 121 ERRMTLTDSIERCLKKGKSDEQRAAAALASVLCIQLGPGIESEEILKTLGPILKKIICDG 180
Query: 181 SASMQARQTCATCFGVCCFIATDDITELYSTLECLENIFTKSYLKEKDTTVICSTPNTVL 240
SASMQARQTCATCFGVCCFIATDDITELYSTLECLENIFTKSYLKEKDTTVICSTPNTVL
Sbjct: 181 SASMQARQTCATCFGVCCFIATDDITELYSTLECLENIFTKSYLKEKDTTVICSTPNTVL 240
Query: 241 HISSLLAWTLLLTICPINEVKKKLEMHFHKLPSLLSCDDVNMRIAAGESLALLFELARGI 300
HISSLLAWTLLLTICPINEVKKKLEMHFHKLPSLLSCDDVNMRIAAGESLALLFELARGI
Sbjct: 241 HISSLLAWTLLLTICPINEVKKKLEMHFHKLPSLLSCDDVNMRIAAGESLALLFELARGI 300
Query: 301 ESDFFYEDMESLTQMLRALATDGNKHRAKVDKRKQRSVFRDVLRAVEERDFPTETIKFGP 360
ESDFFYEDMESLTQMLRALATDGNKHRAKVDKRKQRSVFRDVLRAVEERDFPTETIKFGP
Sbjct: 301 ESDFFYEDMESLTQMLRALATDGNKHRAKVDKRKQRSVFRDVLRAVEERDFPTETIKFGP 360
Query: 361 ERMYIDCWVKKHTYDTFKEVLGSGMQYHLQSNEFLRNVFELGPPVMLDAATLKTMKISRF 420
ERMYIDCWVKKHTYDTFKEVLGSGMQYHLQSNEFLRNVFELGPPVMLDAATLKTMKISRF
Sbjct: 361 ERMYIDCWVKKHTYDTFKEVLGSGMQYHLQSNEFLRNVFELGPPVMLDAATLKTMKISRF 420
Query: 421 ERHLYNSAAFKARTKARSKCRDKRADVGEFF 451
ERHLYNSAAFKARTKARSKCRDKRADVGEFF
Sbjct: 421 ERHLYNSAAFKARTKARSKCRDKRADVGEFF 451
>gi|55953129 interferon-related developmental regulator 1 [Homo
sapiens]
Length = 451
Score = 900 bits (2326), Expect = 0.0
Identities = 451/451 (100%), Positives = 451/451 (100%)
Query: 1 MPKNKKRNTPHRGSSAGGGGSGAAAATAATAGGQHRNVQPFSDEDASIETMSHCSGYSDP 60
MPKNKKRNTPHRGSSAGGGGSGAAAATAATAGGQHRNVQPFSDEDASIETMSHCSGYSDP
Sbjct: 1 MPKNKKRNTPHRGSSAGGGGSGAAAATAATAGGQHRNVQPFSDEDASIETMSHCSGYSDP 60
Query: 61 SSFAEDGPEVLDEEGTQEDLEYKLKGLIDLTLDKSAKTRQAALEGIKNALASKMLYEFIL 120
SSFAEDGPEVLDEEGTQEDLEYKLKGLIDLTLDKSAKTRQAALEGIKNALASKMLYEFIL
Sbjct: 61 SSFAEDGPEVLDEEGTQEDLEYKLKGLIDLTLDKSAKTRQAALEGIKNALASKMLYEFIL 120
Query: 121 ERRMTLTDSIERCLKKGKSDEQRAAAALASVLCIQLGPGIESEEILKTLGPILKKIICDG 180
ERRMTLTDSIERCLKKGKSDEQRAAAALASVLCIQLGPGIESEEILKTLGPILKKIICDG
Sbjct: 121 ERRMTLTDSIERCLKKGKSDEQRAAAALASVLCIQLGPGIESEEILKTLGPILKKIICDG 180
Query: 181 SASMQARQTCATCFGVCCFIATDDITELYSTLECLENIFTKSYLKEKDTTVICSTPNTVL 240
SASMQARQTCATCFGVCCFIATDDITELYSTLECLENIFTKSYLKEKDTTVICSTPNTVL
Sbjct: 181 SASMQARQTCATCFGVCCFIATDDITELYSTLECLENIFTKSYLKEKDTTVICSTPNTVL 240
Query: 241 HISSLLAWTLLLTICPINEVKKKLEMHFHKLPSLLSCDDVNMRIAAGESLALLFELARGI 300
HISSLLAWTLLLTICPINEVKKKLEMHFHKLPSLLSCDDVNMRIAAGESLALLFELARGI
Sbjct: 241 HISSLLAWTLLLTICPINEVKKKLEMHFHKLPSLLSCDDVNMRIAAGESLALLFELARGI 300
Query: 301 ESDFFYEDMESLTQMLRALATDGNKHRAKVDKRKQRSVFRDVLRAVEERDFPTETIKFGP 360
ESDFFYEDMESLTQMLRALATDGNKHRAKVDKRKQRSVFRDVLRAVEERDFPTETIKFGP
Sbjct: 301 ESDFFYEDMESLTQMLRALATDGNKHRAKVDKRKQRSVFRDVLRAVEERDFPTETIKFGP 360
Query: 361 ERMYIDCWVKKHTYDTFKEVLGSGMQYHLQSNEFLRNVFELGPPVMLDAATLKTMKISRF 420
ERMYIDCWVKKHTYDTFKEVLGSGMQYHLQSNEFLRNVFELGPPVMLDAATLKTMKISRF
Sbjct: 361 ERMYIDCWVKKHTYDTFKEVLGSGMQYHLQSNEFLRNVFELGPPVMLDAATLKTMKISRF 420
Query: 421 ERHLYNSAAFKARTKARSKCRDKRADVGEFF 451
ERHLYNSAAFKARTKARSKCRDKRADVGEFF
Sbjct: 421 ERHLYNSAAFKARTKARSKCRDKRADVGEFF 451
>gi|197333755 interferon-related developmental regulator 2 [Homo
sapiens]
Length = 506
Score = 426 bits (1095), Expect = e-119
Identities = 228/451 (50%), Positives = 310/451 (68%), Gaps = 14/451 (3%)
Query: 1 MPKNKKRNTPHRGSSAGGGGSGAAAATAATAGGQHRNVQPFSDEDASIETMSHCSGY-SD 59
MP+ +K NT +G GGG+ ++A A +G SD++A+ E S S S
Sbjct: 65 MPRARKGNTLRKGGQRRGGGARSSAQ--ADSGS--------SDDEAASEARSTASECPSL 114
Query: 60 PSSFAED--GPEVLDEEGTQEDLEYKLKGLIDLTLDKSAKTRQAALEGIKNALASKMLYE 117
S+ AED G +V+DE+G QEDLE KLK +D DKSAKTRQ ALE ++ ALAS++L +
Sbjct: 115 LSTTAEDSLGGDVVDEQGQQEDLEEKLKEYVDCLTDKSAKTRQGALESLRLALASRLLPD 174
Query: 118 FILERRMTLTDSIERCLKKGKSDEQRAAAALASVLCIQLGPGIESEEILKTLGPILKKII 177
F+LERR+TL D++E+CLKKGK +EQ AAA+ +LC+QLGPG + EE+ +L P+L ++
Sbjct: 175 FLLERRLTLADALEKCLKKGKGEEQALAAAVLGLLCVQLGPGPKGEELFHSLQPLLVSVL 234
Query: 178 CDGSASMQARQTCATCFGVCCFIATDDITELYSTLECLENIFTKSY-LKEKDTTVICSTP 236
D +AS AR CA+ G+ C++A DI +L S L CLE++F++ Y L T+ +
Sbjct: 235 SDSTASPAARLHCASALGLGCYVAAADIQDLVSCLACLESVFSRFYGLGGSSTSPVVPAS 294
Query: 237 NTVLHISSLLAWTLLLTICPINEVKKKLEMHFHKLPSLLSCDDVNMRIAAGESLALLFEL 296
L ++L AW LLLTICP ++ L+ +LP LLS + VN+RIAAGE++ALLFEL
Sbjct: 295 LHGLLSAALQAWALLLTICPSTQISHILDRQLPRLPQLLSSESVNLRIAAGETIALLFEL 354
Query: 297 ARGIESDFFYEDMESLTQMLRALATDGNKHRAKVDKRKQRSVFRDVLRAVEERDFPTETI 356
AR +E +F YEDME+L +LR LATD NK+RAK D+R+QRS FR VL +VE + E +
Sbjct: 355 ARDLEEEFVYEDMEALCSVLRTLATDSNKYRAKADRRRQRSTFRAVLHSVEGGECEEEIV 414
Query: 357 KFGPERMYIDCWVKKHTYDTFKEVLGSGMQYHLQSNEFLRNVFELGPPVMLDAATLKTMK 416
+FG E +Y+D W + Y FKEVLGSGM +HLQ+NE LR++F LGP ++LDA LK K
Sbjct: 415 RFGFEVLYMDSWARHRIYAAFKEVLGSGMHHHLQNNELLRDIFGLGPVLLLDATALKACK 474
Query: 417 ISRFERHLYNSAAFKARTKARSKCRDKRADV 447
+ RFE+HLYN+AAFKARTKARS+ RDKRAD+
Sbjct: 475 VPRFEKHLYNAAAFKARTKARSRVRDKRADI 505
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 36.2 bits (82), Expect = 0.062
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 12 RGSSAGGGGSGAAAATAATAGGQHRNVQPFSDEDASI-ETMSHCSGYSDPSSFAEDGPEV 70
R + AG GG GAA A AG PF +A +T + SG S A+ G EV
Sbjct: 503 RRALAGAGGVGAAGAEPPNAG------DPFKAGEAETNDTNGYSSGGGGHSPSADSGDEV 556
Query: 71 LDEEGTQED 79
D+E ED
Sbjct: 557 PDDEDDDED 565
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 36.2 bits (82), Expect = 0.062
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 12 RGSSAGGGGSGAAAATAATAGGQHRNVQPFSDEDASI-ETMSHCSGYSDPSSFAEDGPEV 70
R + AG GG GAA A AG PF +A +T + SG S A+ G EV
Sbjct: 100 RRALAGAGGVGAAGAEPPNAG------DPFKAGEAETNDTNGYSSGGGGHSPSADSGDEV 153
Query: 71 LDEEGTQED 79
D+E ED
Sbjct: 154 PDDEDDDED 162
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein
[Homo sapiens]
Length = 3969
Score = 34.3 bits (77), Expect = 0.24
Identities = 25/64 (39%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 13 GSSAGGGGSGA-----AAATAATAGGQHRNVQPFSDEDASIETMSHCSGYSDPSSFAEDG 67
G GGGG GA A A AA A G P AS + S S S SS A G
Sbjct: 43 GPPVGGGGPGAPPSPPAVAAAAAAAGSSGAGVPGGAAAASAASSSSASSSSSSSSSASSG 102
Query: 68 PEVL 71
P +L
Sbjct: 103 PALL 106
>gi|119395716 forkhead box C1 [Homo sapiens]
Length = 553
Score = 33.5 bits (75), Expect = 0.40
Identities = 17/34 (50%), Positives = 18/34 (52%)
Query: 9 TPHRGSSAGGGGSGAAAATAATAGGQHRNVQPFS 42
T GSS GGGG AA A AG H N+Q S
Sbjct: 368 TSSAGSSGGGGGGAGAAGGAGGAGTYHCNLQAMS 401
>gi|4504849 potassium channel, subfamily K, member 3 [Homo sapiens]
Length = 394
Score = 33.5 bits (75), Expect = 0.40
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 15/89 (16%)
Query: 3 KNKKRNTPHRG-----SSAGGGGSG-------AAAATAATAGGQHRNVQPFSDEDASIET 50
+++KR+ HR AGGGG G A++TAA GG RNV E ++
Sbjct: 252 EDEKRDAEHRALLTRNGQAGGGGGGGSAHTTDTASSTAAAGGGGFRNVYA---EVLHFQS 308
Query: 51 MSHCSGYSDPSSFAEDGPEVLDEEGTQED 79
M C Y P ++ + + D
Sbjct: 309 MCSCLWYKSREKLQYSIPMIIPRDLSTSD 337
>gi|27886561 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 1 [Homo sapiens]
Length = 1075
Score = 32.7 bits (73), Expect = 0.69
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 14 SSAGGGGSGAAAATAATAGGQHRNVQPFSDEDASIETMSHCSGYSDPSSFAEDGPEV-LD 72
S + G S + AT +G Q S + C DP+SF DG V +
Sbjct: 954 SPSSGTASSPSPATRMHSGQHSTQAQSTGQGGLSAPSSLICHSLCDPASFPPDGATVSIK 1013
Query: 73 EEGTQEDLEYKLKGLIDLTLD 93
E + + GL D+TLD
Sbjct: 1014 PEPEDREPNFATIGLQDITLD 1034
>gi|27886559 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 4 [Homo sapiens]
Length = 1045
Score = 32.7 bits (73), Expect = 0.69
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 14 SSAGGGGSGAAAATAATAGGQHRNVQPFSDEDASIETMSHCSGYSDPSSFAEDGPEV-LD 72
S + G S + AT +G Q S + C DP+SF DG V +
Sbjct: 954 SPSSGTASSPSPATRMHSGQHSTQAQSTGQGGLSAPSSLICHSLCDPASFPPDGATVSIK 1013
Query: 73 EEGTQEDLEYKLKGLIDLTLD 93
E + + GL D+TLD
Sbjct: 1014 PEPEDREPNFATIGLQDITLD 1034
>gi|27886555 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 3 [Homo sapiens]
Length = 1065
Score = 32.7 bits (73), Expect = 0.69
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 14 SSAGGGGSGAAAATAATAGGQHRNVQPFSDEDASIETMSHCSGYSDPSSFAEDGPEV-LD 72
S + G S + AT +G Q S + C DP+SF DG V +
Sbjct: 954 SPSSGTASSPSPATRMHSGQHSTQAQSTGQGGLSAPSSLICHSLCDPASFPPDGATVSIK 1013
Query: 73 EEGTQEDLEYKLKGLIDLTLD 93
E + + GL D+TLD
Sbjct: 1014 PEPEDREPNFATIGLQDITLD 1034
>gi|4758804 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 2 [Homo sapiens]
Length = 1068
Score = 32.7 bits (73), Expect = 0.69
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 14 SSAGGGGSGAAAATAATAGGQHRNVQPFSDEDASIETMSHCSGYSDPSSFAEDGPEV-LD 72
S + G S + AT +G Q S + C DP+SF DG V +
Sbjct: 954 SPSSGTASSPSPATRMHSGQHSTQAQSTGQGGLSAPSSLICHSLCDPASFPPDGATVSIK 1013
Query: 73 EEGTQEDLEYKLKGLIDLTLD 93
E + + GL D+TLD
Sbjct: 1014 PEPEDREPNFATIGLQDITLD 1034
>gi|4759276 RNA, U3 small nucleolar interacting protein 2 [Homo
sapiens]
Length = 475
Score = 32.0 bits (71), Expect = 1.2
Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 12/153 (7%)
Query: 12 RGSSAGGGGSGAAAATAATAGGQHRNVQPFSDEDASI---ETMSHCSGYSDPSSFAEDGP 68
RG A G G+GA AG + R D S + S S+ S A P
Sbjct: 10 RGKPASGAGAGAG------AGKRRRKADSAGDRGKSKGGGKMNEEISSDSESESLAPRKP 63
Query: 69 EVLDEEGTQEDLEYKLKGLIDLTLD--KSAKTRQAALEGIKNALASKMLYEFILERRMTL 126
E +EE +E + K L L L+ + + +A + + L E +LE+R L
Sbjct: 64 EEEEEEELEETAQEKKLRLAKLYLEQLRQQEEEKAEARAFEEDQVAGRLKEDVLEQRGRL 123
Query: 127 TDSIERCLKKGKSDEQRAAAA-LASVLCIQLGP 158
+ + ++ S + R S+ C+ + P
Sbjct: 124 QKLVAKEIQAPASADIRVLRGHQLSITCLVVTP 156
>gi|13786123 HMG-box transcription factor TCF-3 [Homo sapiens]
Length = 588
Score = 32.0 bits (71), Expect = 1.2
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 13 GSSAGGGGSGAAAATAATAGGQHRNVQPFSDEDASIETMSHCSGYSDPSSFAEDGPEV 70
G S GGGGS A AA G + + PF DE + S SD +S D EV
Sbjct: 13 GGSGGGGGSSAGAAGGGDDLGANDELIPFQDEGGEEQEPS-----SDSASAQRDLDEV 65
>gi|13994190 frizzled 8 [Homo sapiens]
Length = 694
Score = 32.0 bits (71), Expect = 1.2
Identities = 14/24 (58%), Positives = 14/24 (58%)
Query: 10 PHRGSSAGGGGSGAAAATAATAGG 33
PHRG GGGG AAA A GG
Sbjct: 191 PHRGGGRGGGGGDAAAPPARGGGG 214
>gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1
[Homo sapiens]
Length = 2564
Score = 31.6 bits (70), Expect = 1.5
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 15 SAGGGGSGAAAATAATAGGQH 35
+AGGGG+ AA A TAGG H
Sbjct: 669 AAGGGGAAGAAGAAGTAGGAH 689
>gi|224458284 Rho GTPase activating protein 23 [Homo sapiens]
Length = 1397
Score = 31.2 bits (69), Expect = 2.0
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 11/116 (9%)
Query: 257 INEVKKKLEMHFHKLPSLLSCDD-------VNMRIAAGESLALLFELARGIESDFFYEDM 309
+N + L+ F KLP L DD N A E + L +L R + +YE +
Sbjct: 880 LNVISSLLKSFFRKLPEPLFTDDKYNDFIEANRIEDARERMRTLRKLIRDLPG-HYYETL 938
Query: 310 ESLTQMLRALATDGNKHRAKVDKRKQRSVFRDVLRAVEERDFPTETIKFGPERMYI 365
+ L L+ +A K+ K++ R VF L E D T+ + P+R I
Sbjct: 939 KFLVGHLKTIADHSEKN--KMEPRNLALVFGPTLVRTSE-DNMTDMVTHMPDRYKI 991
>gi|24432032 zinc finger protein 503 [Homo sapiens]
Length = 646
Score = 30.8 bits (68), Expect = 2.6
Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 2 PKNKKRNTPHRGSSAGGGGSGAAAATAATAGGQHRNVQPFSDEDASIETMSHCSGYSDPS 61
P +K + G AGG G GAA +G P D +E S YS P
Sbjct: 130 PSSKLSSVASNGGGAGGAGGGAAGDKDTKSG-------PLKLSDIGVEDKSSFKPYSKPG 182
Query: 62 S 62
S
Sbjct: 183 S 183
Score = 29.3 bits (64), Expect = 7.6
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 7 RNTPHRGSSAGG-GGSGAAAATAATAGGQHRNVQPFSDEDASIETMSHCSGYSDP 60
R++ H G GG GG GA A + G P S S + H SDP
Sbjct: 11 RSSKHSGGGGGGGGGGGADPAWTSALSGNSSGPGPGSSPAGSTKPFVHAVPPSDP 65
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 30.8 bits (68), Expect = 2.6
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
Query: 11 HRGSSAGGGGSGAAAATAATAGGQHRNV 38
H GSS+GGGGSG TA+T G Q +V
Sbjct: 484 HGGSSSGGGGSG----TASTGGSQAASV 507
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 30.8 bits (68), Expect = 2.6
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
Query: 11 HRGSSAGGGGSGAAAATAATAGGQHRNV 38
H GSS+GGGGSG TA+T G Q +V
Sbjct: 484 HGGSSSGGGGSG----TASTGGSQAASV 507
>gi|194294523 intersectin 2 isoform 3 [Homo sapiens]
Length = 1670
Score = 30.8 bits (68), Expect = 2.6
Identities = 41/168 (24%), Positives = 62/168 (36%), Gaps = 18/168 (10%)
Query: 32 GGQHRNVQPFSDEDASIETMSHCSGYSDPSSFAEDGPEVLDEEGTQEDLEYK--LKGLID 89
GG+ VQ D A+ +SH Y S +G +L ++ T ED ++K LK L
Sbjct: 1251 GGEKMPVQMIGDILAA--ELSHMQAYIRFCSCQLNGAALLQQK-TDEDTDFKEFLKKLAS 1307
Query: 90 LTLDKSAKTRQAALEGIKNALASKMLYEFILERRMTLTDSIERCLKKGKSDEQRAAAAL- 148
K L+ ++ +L ILE + +D AL
Sbjct: 1308 DPRCKGMPLSSFLLKPMQRITRYPLLIRSILENT-----------PESHADHSSLKLALE 1356
Query: 149 -ASVLCIQLGPGIESEEILKTLGPILKKIICDGSASMQARQTCATCFG 195
A LC Q+ G+ +E L I + C+G A + C G
Sbjct: 1357 RAEELCSQVNEGVREKENSDRLEWIQAHVQCEGLAEQLIFNSLTNCLG 1404
>gi|194294521 intersectin 2 isoform 1 [Homo sapiens]
Length = 1697
Score = 30.8 bits (68), Expect = 2.6
Identities = 41/168 (24%), Positives = 62/168 (36%), Gaps = 18/168 (10%)
Query: 32 GGQHRNVQPFSDEDASIETMSHCSGYSDPSSFAEDGPEVLDEEGTQEDLEYK--LKGLID 89
GG+ VQ D A+ +SH Y S +G +L ++ T ED ++K LK L
Sbjct: 1278 GGEKMPVQMIGDILAA--ELSHMQAYIRFCSCQLNGAALLQQK-TDEDTDFKEFLKKLAS 1334
Query: 90 LTLDKSAKTRQAALEGIKNALASKMLYEFILERRMTLTDSIERCLKKGKSDEQRAAAAL- 148
K L+ ++ +L ILE + +D AL
Sbjct: 1335 DPRCKGMPLSSFLLKPMQRITRYPLLIRSILENT-----------PESHADHSSLKLALE 1383
Query: 149 -ASVLCIQLGPGIESEEILKTLGPILKKIICDGSASMQARQTCATCFG 195
A LC Q+ G+ +E L I + C+G A + C G
Sbjct: 1384 RAEELCSQVNEGVREKENSDRLEWIQAHVQCEGLAEQLIFNSLTNCLG 1431
>gi|189011568 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 30.4 bits (67), Expect = 3.4
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 5 KKRNTPHRGSSAGGGGSGAAAATAATAGGQHRNVQPFSDEDASIETMSHCSGYSDPSSFA 64
K++N H S+ G AAT + +Q + ED I S CS S SS A
Sbjct: 1226 KRQNQLHPSSAQSRSGQPQKAATCKVSSINQETIQTYCVEDTPI-CFSRCSSLSSLSS-A 1283
Query: 65 EDGPEVLDEEGTQE 78
ED E+ + TQE
Sbjct: 1284 ED--EIGCNQTTQE 1295
>gi|189011566 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 30.4 bits (67), Expect = 3.4
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 5 KKRNTPHRGSSAGGGGSGAAAATAATAGGQHRNVQPFSDEDASIETMSHCSGYSDPSSFA 64
K++N H S+ G AAT + +Q + ED I S CS S SS A
Sbjct: 1226 KRQNQLHPSSAQSRSGQPQKAATCKVSSINQETIQTYCVEDTPI-CFSRCSSLSSLSS-A 1283
Query: 65 EDGPEVLDEEGTQE 78
ED E+ + TQE
Sbjct: 1284 ED--EIGCNQTTQE 1295
>gi|53759122 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 30.4 bits (67), Expect = 3.4
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 5 KKRNTPHRGSSAGGGGSGAAAATAATAGGQHRNVQPFSDEDASIETMSHCSGYSDPSSFA 64
K++N H S+ G AAT + +Q + ED I S CS S SS A
Sbjct: 1226 KRQNQLHPSSAQSRSGQPQKAATCKVSSINQETIQTYCVEDTPI-CFSRCSSLSSLSS-A 1283
Query: 65 EDGPEVLDEEGTQE 78
ED E+ + TQE
Sbjct: 1284 ED--EIGCNQTTQE 1295
>gi|198041755 pre-B-cell leukemia homeobox 3 isoform 2 [Homo
sapiens]
Length = 359
Score = 30.4 bits (67), Expect = 3.4
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 18 GGGSGAAAATAATAGGQHRNVQPFSDEDASI 48
GGGS AAAA AA +GG N SD A +
Sbjct: 51 GGGSAAAAAAAAASGGSSDNSIEHSDYRAKL 81
>gi|5453852 pre-B-cell leukemia homeobox 3 isoform 1 [Homo sapiens]
Length = 434
Score = 30.4 bits (67), Expect = 3.4
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 18 GGGSGAAAATAATAGGQHRNVQPFSDEDASI 48
GGGS AAAA AA +GG N SD A +
Sbjct: 126 GGGSAAAAAAAAASGGSSDNSIEHSDYRAKL 156
>gi|31652242 transcription factor 20 isoform 2 [Homo sapiens]
Length = 1938
Score = 30.4 bits (67), Expect = 3.4
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 13 GSSAGGGGSGAAAATAATAG--GQHRNVQPFSDEDASIETMSHCSGYSDP 60
GS +GGG GAAAA AA A H+ Q F E M +G DP
Sbjct: 52 GSGSGGGRRGAAAAAAAMASETSGHQGYQGFRKEAGDFYYM---AGNKDP 98
>gi|31652244 transcription factor 20 isoform 1 [Homo sapiens]
Length = 1960
Score = 30.4 bits (67), Expect = 3.4
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 13 GSSAGGGGSGAAAATAATAG--GQHRNVQPFSDEDASIETMSHCSGYSDP 60
GS +GGG GAAAA AA A H+ Q F E M +G DP
Sbjct: 52 GSGSGGGRRGAAAAAAAMASETSGHQGYQGFRKEAGDFYYM---AGNKDP 98
>gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens]
Length = 689
Score = 30.4 bits (67), Expect = 3.4
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 9/72 (12%)
Query: 3 KNKKRNTPHRGSSAGGGGSGAAAATAATAGGQHRNVQP-----FSDEDASIETMSHCS-- 55
+ ++R + + A GGG G+ + GG+H + P F + + ++C
Sbjct: 363 RKRRRTSSKSEAGARGGGQGSKEKGRGSWGGRHHHHHPLPAAGFKKQQRKFQYGNYCKYY 422
Query: 56 GYSDPSSFAEDG 67
GY +PS EDG
Sbjct: 423 GYRNPS--CEDG 432
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,321,983
Number of Sequences: 37866
Number of extensions: 697309
Number of successful extensions: 4258
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 4078
Number of HSP's gapped (non-prelim): 186
length of query: 451
length of database: 18,247,518
effective HSP length: 106
effective length of query: 345
effective length of database: 14,233,722
effective search space: 4910634090
effective search space used: 4910634090
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.