Guide to the Human Genome
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Name: TCF20 Sequence: fasta or formatted (1960aa) NCBI GI: 31652244
Description:

transcription factor 20 isoform 1

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [1938aa] transcription factor 20 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3        124           7
 C cysteine            1.3         26           2
 D aspartate           3.6         70           2
 E glutamate           6.1        119           5
 F phenylalanine       2.1         42           1
 G glycine             9.7        190           4
 H histidine           3.1         60           3
 I isoleucine          2.1         42           2
 K lysine              6.1        119           3
 L leucine             5.9        115           2
 M methionine          2.0         40           2
 N asparagine          3.8         75           2
 P proline             9.6        188           6
 Q glutamine           8.5        167           6
 R arginine            5.5        108           3
 S serine             12.9        253           7
 T threonine           4.5         88           2
 V valine              3.8         74           2
 W tryptophan          0.4          8           1
 Y tyrosine            2.7         52           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transcription factor 20 isoform 1 
TCF20                 0.986   transcription factor 20 isoform 2 
RAI1                  0.056   retinoic acid induced 1 
ARID1A                0.017   AT rich interactive domain 1A isoform a 
HRNR                  0.016   hornerin 
ARID1A                0.015   AT rich interactive domain 1A isoform b 
FLG                   0.015   filaggrin 
ARID1B                0.014   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.014   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
FLG2                  0.014   filaggrin family member 2 
MLL3                  0.013   myeloid/lymphoid or mixed-lineage leukemia 3 
ARID1B                0.013   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
MLL2                  0.011   myeloid/lymphoid or mixed-lineage leukemia 2 
MED15                 0.010   mediator complex subunit 15 isoform a 
MED15                 0.010   mediator complex subunit 15 isoform b 
PCLO                  0.010   piccolo isoform 2 
PCLO                  0.010   piccolo isoform 1 
SRRM2                 0.010   splicing coactivator subunit SRm300 
CHD7                  0.009   chromodomain helicase DNA binding protein 7 
NOLC1                 0.009   nucleolar and coiled-body phosphoprotein 1 
PAXIP1                0.009   PAX interacting protein 1 
SUPT5H                0.009   suppressor of Ty 5 homolog isoform b 
SUPT5H                0.009   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.009   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.009   suppressor of Ty 5 homolog isoform a 
NCOA6                 0.009   nuclear receptor coactivator 6 
MAML2                 0.008   mastermind-like 2 
MAPT                  0.008   microtubule-associated protein tau isoform 6 
MAPT                  0.008   microtubule-associated protein tau isoform 1 
BASP1                 0.008   brain abundant, membrane attached signal protein 1 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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