Guide to the Human Genome
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Name: IFRD2 Sequence: fasta or formatted (506aa) NCBI GI: 197333755
Description:

interferon-related developmental regulator 2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         58           3
 C cysteine            2.4         12           1
 D aspartate           4.9         25           2
 E glutamate           7.1         36           3
 F phenylalanine       2.6         13           1
 G glycine             8.1         41           3
 H histidine           2.0         10           3
 I isoleucine          2.0         10           1
 K lysine              4.0         20           2
 L leucine            14.4         73           3
 M methionine          1.0          5           1
 N asparagine          1.4          7           2
 P proline             4.9         25           2
 Q glutamine           3.8         19           2
 R arginine            8.7         44           3
 S serine              9.1         46           2
 T threonine           4.2         21           2
 V valine              5.5         28           2
 W tryptophan          1.0          5           1
 Y tyrosine            1.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   interferon-related developmental regulator 2 
IFRD1                 0.413   interferon-related developmental regulator 1 
IFRD1                 0.413   interferon-related developmental regulator 1 
PER1                  0.015   period 1 
CKAP4                 0.014   cytoskeleton-associated protein 4 
SRRM2                 0.014   splicing coactivator subunit SRm300 
NFKBIE                0.013   nuclear factor of kappa light polypeptide gene enhan...
ARL6IP4               0.012   SRp25 nuclear protein isoform 3 
BPTF                  0.011   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.011   bromodomain PHD finger transcription factor isoform ...
INF2                  0.011   inverted formin 2 isoform 2 
INF2                  0.011   inverted formin 2 isoform 1 
IQSEC2                0.011   IQ motif and Sec7 domain 2 isoform 2 
IQSEC2                0.011   IQ motif and Sec7 domain 2 isoform1 
AMBN                  0.011   ameloblastin precursor 
SIRT1                 0.010   sirtuin 1 isoform a 
KIF21A                0.010   kinesin family member 21A 
LOC643355             0.010   PREDICTED: hypothetical protein 
PHF2                  0.010   PHD finger protein 2 
C17orf59              0.010   hypothetical protein LOC54785 
MLL                   0.009   myeloid/lymphoid or mixed-lineage leukemia protein [...
NKX3-1                0.009   NK3 homeobox 1 
LOC100291828          0.009   PREDICTED: hypothetical protein XP_002344932 
LOC100288926          0.009   PREDICTED: hypothetical protein XP_002343509 
AFF4                  0.009   ALL1 fused gene from 5q31 
SRRM1                 0.009   serine/arginine repetitive matrix 1 
DLAT                  0.009   dihydrolipoamide S-acetyltransferase 
RELL2                 0.009   RELT-like 2 
RELL2                 0.009   RELT-like 2 
ZNF318                0.009   zinc finger protein 318 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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