Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PBX3 Sequence: fasta or formatted (359aa) NCBI GI: 198041755
Description:

pre-B-cell leukemia homeobox 3 isoform 2

Referenced in:

Homeobox and Related Proteins

Other entries for this name:
alt prot [434aa] pre-B-cell leukemia homeobox 3 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         32           9
 C cysteine            1.1          4           1
 D aspartate           3.3         12           1
 E glutamate           6.7         24           2
 F phenylalanine       2.8         10           1
 G glycine             7.5         27           3
 H histidine           2.5          9           1
 I isoleucine          4.5         16           2
 K lysine              5.3         19           2
 L leucine             6.7         24           2
 M methionine          2.8         10           1
 N asparagine          7.2         26           2
 P proline             4.5         16           2
 Q glutamine           5.8         21           1
 R arginine            5.0         18           2
 S serine             11.4         41           2
 T threonine           5.8         21           2
 V valine              4.5         16           1
 W tryptophan          0.6          2           1
 Y tyrosine            3.1         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pre-B-cell leukemia homeobox 3 isoform 2 
PBX3                  1.000   pre-B-cell leukemia homeobox 3 isoform 1 
PBX1                  0.874   pre-B-cell leukemia homeobox 1 
PBX2                  0.773   pre-B-cell leukemia homeobox 2 
PBX4                  0.588   pre-B-cell leukemia homeobox 4 
PKNOX2                0.059   PBX/knotted 1 homeobox 2 
MEIS3                 0.053   Meis1, myeloid ecotropic viral integration site 1 ho...
MEIS2                 0.052   Meis homeobox 2 isoform h 
MEIS2                 0.052   Meis homeobox 2 isoform g 
MEIS2                 0.052   Meis homeobox 2 isoform a 
MEIS2                 0.052   Meis homeobox 2 isoform d 
MEIS2                 0.052   Meis homeobox 2 isoform c 
MEIS2                 0.052   Meis homeobox 2 isoform b 
MEIS2                 0.052   Meis homeobox 2 isoform f 
MEIS1                 0.052   Meis homeobox 1 
PKNOX1                0.052   PBX/knotted 1 homeobox 1 
TGIF2LX               0.045   TGFB-induced factor homeobox 2-like, X-linked 
TGIF1                 0.042   TG-interacting factor isoform a 
TGIF1                 0.042   TG-interacting factor isoform c 
TGIF1                 0.042   TG-interacting factor isoform d 
TGIF1                 0.042   TG-interacting factor isoform d 
TGIF1                 0.042   TG-interacting factor isoform d 
TGIF1                 0.042   TG-interacting factor isoform d 
TGIF1                 0.042   TG-interacting factor isoform c 
TGIF1                 0.042   TG-interacting factor isoform b 
SIX2                  0.040   SIX homeobox 2 
TGIF2                 0.040   TGFB-induced factor homeobox 2 
IRX4                  0.039   iroquois homeobox 4 
TGIF2LY               0.038   TGFB-induced factor homeobox 2-like, Y-linked 
IRX6                  0.036   iroquois homeobox protein 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press