Guide to the Human Genome
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Name: IFRD1 Sequence: fasta or formatted (451aa) NCBI GI: 55953129
Description:

interferon-related developmental regulator 1

Not currently referenced in the text

Other entries for this name:
alt mRNA {451aa} interferon-related developmental regulator 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         40           4
 C cysteine            3.1         14           2
 D aspartate           6.0         27           2
 E glutamate           8.0         36           2
 F phenylalanine       4.4         20           2
 G glycine             6.0         27           4
 H histidine           2.2         10           1
 I isoleucine          5.1         23           2
 K lysine              8.0         36           3
 L leucine            10.4         47           3
 M methionine          2.9         13           1
 N asparagine          2.7         12           1
 P proline             3.1         14           2
 Q glutamine           2.7         12           1
 R arginine            5.8         26           2
 S serine              7.5         34           2
 T threonine           6.9         31           2
 V valine              3.8         17           1
 W tryptophan          0.4          2           1
 Y tyrosine            2.2         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   interferon-related developmental regulator 1 
IFRD1                 1.000   interferon-related developmental regulator 1 
IFRD2                 0.458   interferon-related developmental regulator 2 
NKX1-1                0.013   PREDICTED: NK1 homeobox 1 
NKX1-1                0.013   PREDICTED: HPX-153 homeobox 
MLL                   0.010   myeloid/lymphoid or mixed-lineage leukemia protein [...
FOXC1                 0.009   forkhead box C1 
KCNK3                 0.009   potassium channel, subfamily K, member 3 
NFATC3                0.009   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.009   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.009   nuclear factor of activated T-cells, cytoplasmic, ca...
NFATC3                0.009   nuclear factor of activated T-cells, cytoplasmic, cal...
RRP9                  0.008   RNA, U3 small nucleolar interacting protein 2 
TCF7L1                0.008   HMG-box transcription factor TCF-3 
FZD8                  0.008   frizzled 8 
SPTBN4                0.008   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
ARHGAP23              0.007   Rho GTPase activating protein 23 
ZNF503                0.007   zinc finger protein 503 
ZBTB4                 0.007   zinc finger and BTB domain containing 4 
ZBTB4                 0.007   zinc finger and BTB domain containing 4 
ITSN2                 0.007   intersectin 2 isoform 3 
ITSN2                 0.007   intersectin 2 isoform 1 
APC                   0.006   adenomatous polyposis coli 
APC                   0.006   adenomatous polyposis coli 
APC                   0.006   adenomatous polyposis coli 
PBX3                  0.006   pre-B-cell leukemia homeobox 3 isoform 2 
PBX3                  0.006   pre-B-cell leukemia homeobox 3 isoform 1 
TCF20                 0.006   transcription factor 20 isoform 2 
TCF20                 0.006   transcription factor 20 isoform 1 
MEPCE                 0.006   bin3, bicoid-interacting 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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