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Search of human proteins with 55769541
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|55769541 AHNAK nucleoprotein isoform 2 [Homo sapiens]
(149 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55769541 AHNAK nucleoprotein isoform 2 [Homo sapiens] 301 1e-82
gi|61743954 AHNAK nucleoprotein isoform 1 [Homo sapiens] 234 3e-62
gi|116686120 periaxin isoform 2 [Homo sapiens] 52 2e-07
gi|13491172 periaxin isoform 1 [Homo sapiens] 52 2e-07
gi|156766050 AHNAK nucleoprotein 2 [Homo sapiens] 47 5e-06
gi|55770895 ERBB2 interacting protein isoform 7 [Homo sapiens] 40 0.001
gi|8923909 ERBB2 interacting protein isoform 2 [Homo sapiens] 40 0.001
gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens] 37 0.006
gi|142976783 PDZ domain containing RING finger 4 [Homo sapiens] 36 0.014
gi|55749523 syntenin isoform 3 [Homo sapiens] 35 0.018
gi|55749515 syntenin isoform 3 [Homo sapiens] 35 0.018
gi|55749504 syntenin isoform 2 [Homo sapiens] 35 0.018
gi|55749490 syntenin isoform 1 [Homo sapiens] 35 0.018
gi|56243522 syntenin isoform 1 [Homo sapiens] 35 0.018
gi|148746189 multiple PDZ domain protein [Homo sapiens] 35 0.023
gi|112382257 InaD-like [Homo sapiens] 35 0.023
gi|46559761 PDZ domain containing 4 [Homo sapiens] 34 0.052
gi|45827729 scribble isoform b [Homo sapiens] 33 0.089
gi|45827731 scribble isoform a [Homo sapiens] 33 0.089
gi|116875765 tight junction protein 1 isoform b [Homo sapiens] 33 0.12
gi|116875767 tight junction protein 1 isoform a [Homo sapiens] 33 0.12
gi|10092691 tight junction protein 3 [Homo sapiens] 33 0.12
gi|122937249 glutamate receptor interacting protein 2 [Homo sapi... 33 0.12
gi|95089461 discs large homolog 5 [Homo sapiens] 32 0.15
gi|29826294 golgi reassembly stacking protein 2 [Homo sapiens] 32 0.20
gi|134152672 syndecan binding protein 2 isoform a [Homo sapiens] 32 0.26
gi|38016916 syndecan binding protein 2 isoform b [Homo sapiens] 32 0.26
gi|110346438 FERM and PDZ domain containing 2 isoform 1 [Homo sa... 31 0.34
gi|110346436 FERM and PDZ domain containing 2 isoform 3 [Homo sa... 31 0.34
gi|188497758 ubiquitin associated protein 2-like isoform a [Homo... 31 0.44
>gi|55769541 AHNAK nucleoprotein isoform 2 [Homo sapiens]
Length = 149
Score = 301 bits (772), Expect = 1e-82
Identities = 149/149 (100%), Positives = 149/149 (100%)
Query: 1 MEKEETTRELLLPNWQGSGSHGLTIAQRDDGVFVQEVTQNSPAARTGVVKEGDQIVGATI 60
MEKEETTRELLLPNWQGSGSHGLTIAQRDDGVFVQEVTQNSPAARTGVVKEGDQIVGATI
Sbjct: 1 MEKEETTRELLLPNWQGSGSHGLTIAQRDDGVFVQEVTQNSPAARTGVVKEGDQIVGATI 60
Query: 61 YFDNLQSGEVTQLLNTMGHHTVGLKLHRKGDRSPEPGQTWTREVFSSCSSEVVLNTPQPS 120
YFDNLQSGEVTQLLNTMGHHTVGLKLHRKGDRSPEPGQTWTREVFSSCSSEVVLNTPQPS
Sbjct: 61 YFDNLQSGEVTQLLNTMGHHTVGLKLHRKGDRSPEPGQTWTREVFSSCSSEVVLNTPQPS 120
Query: 121 ALECKDQNKQKEASSQAGAVSVSTPNAGL 149
ALECKDQNKQKEASSQAGAVSVSTPNAGL
Sbjct: 121 ALECKDQNKQKEASSQAGAVSVSTPNAGL 149
>gi|61743954 AHNAK nucleoprotein isoform 1 [Homo sapiens]
Length = 5890
Score = 234 bits (596), Expect = 3e-62
Identities = 114/115 (99%), Positives = 115/115 (100%)
Query: 1 MEKEETTRELLLPNWQGSGSHGLTIAQRDDGVFVQEVTQNSPAARTGVVKEGDQIVGATI 60
MEKEETTRELLLPNWQGSGSHGLTIAQRDDGVFVQEVTQNSPAARTGVVKEGDQIVGATI
Sbjct: 1 MEKEETTRELLLPNWQGSGSHGLTIAQRDDGVFVQEVTQNSPAARTGVVKEGDQIVGATI 60
Query: 61 YFDNLQSGEVTQLLNTMGHHTVGLKLHRKGDRSPEPGQTWTREVFSSCSSEVVLN 115
YFDNLQSGEVTQLLNTMGHHTVGLKLHRKGDRSPEPGQTWTREVFSSCSSEVVL+
Sbjct: 61 YFDNLQSGEVTQLLNTMGHHTVGLKLHRKGDRSPEPGQTWTREVFSSCSSEVVLS 115
>gi|116686120 periaxin isoform 2 [Homo sapiens]
Length = 1461
Score = 52.0 bits (123), Expect = 2e-07
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Query: 9 ELLLPNWQGSGSHGLTIAQRD-DGVFVQEVTQNSPAARTGVVKEGDQIVGATIYFDNLQS 67
E+++ +G G+ +A +G+FV+E+ ++SPAAR+ ++EGDQ++ A ++F+N +
Sbjct: 18 EIIVETEAQTGVSGINVAGGGKEGIFVRELREDSPAARSLSLQEGDQLLSARVFFENFKY 77
Query: 68 GEVTQLLNTMGHHTVGLKLHR---KGDRSPEPGQTWTREVFSSCSSEVVLNTPQPSALEC 124
+ +LL + V L R GD + PG E+ + LN S ++
Sbjct: 78 EDALRLLQCAEPYKVSFCLKRTVPTGDLALRPGTVSGYEIKGPRAKVAKLNIQSLSPVKK 137
Query: 125 K 125
K
Sbjct: 138 K 138
>gi|13491172 periaxin isoform 1 [Homo sapiens]
Length = 147
Score = 51.6 bits (122), Expect = 2e-07
Identities = 36/123 (29%), Positives = 67/123 (54%), Gaps = 8/123 (6%)
Query: 9 ELLLPNWQGSGSHGLTIAQRD-DGVFVQEVTQNSPAARTGVVKEGDQIVGATIYFDNLQS 67
E+++ +G G+ +A +G+FV+E+ ++SPAAR+ ++EGDQ++ A ++F+N +
Sbjct: 18 EIIVETEAQTGVSGINVAGGGKEGIFVRELREDSPAARSLSLQEGDQLLSARVFFENFKY 77
Query: 68 GEVTQLLNTMGHHTVGLKLHR---KGDRSPEPGQTWTREV---FSSCSSEVVLNTPQPSA 121
+ +LL + V L R GD + PG E+ + + V + +P P A
Sbjct: 78 EDALRLLQCAEPYKVSFCLKRTVPTGDLALRPGTVSGYEIKGPRAKVAKLVRVLSPAP-A 136
Query: 122 LEC 124
L+C
Sbjct: 137 LDC 139
>gi|156766050 AHNAK nucleoprotein 2 [Homo sapiens]
Length = 5795
Score = 47.4 bits (111), Expect = 5e-06
Identities = 24/89 (26%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 2 EKEETTRELLLPNWQGSGSHGLTIAQR-DDGVFVQEVTQNSPAARTGVVKEGDQIVGATI 60
E + E+ L +G+ G ++ D G+FV++V ++S AA+ ++EGDQ++ T+
Sbjct: 105 EAVQEATEVTLKTEVEAGASGYSVTGGGDQGIFVKQVLKDSSAAKLFNLREGDQLLSTTV 164
Query: 61 YFDNLQSGEVTQLLNTMGHHTVGLKLHRK 89
+F+N++ + ++L + V K+ R+
Sbjct: 165 FFENIKYEDALKILQYSEPYKVQFKIRRQ 193
>gi|55770895 ERBB2 interacting protein isoform 7 [Homo sapiens]
Length = 1302
Score = 39.7 bits (91), Expect = 0.001
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 17 GSGSHGLTIAQRDDGVFVQEVTQNSPAARTGVVKEGDQIVGATIY-FDNLQSGEVTQLLN 75
G G G DDG+FV V PA++ +++ GD+I+ A Y F N++ G+ LL
Sbjct: 1229 GVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLK 1286
Query: 76 TMGHHTVGLKLHRK 89
T +TV L + R+
Sbjct: 1287 TF-QNTVELIIVRE 1299
>gi|8923909 ERBB2 interacting protein isoform 2 [Homo sapiens]
Length = 1371
Score = 39.7 bits (91), Expect = 0.001
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 17 GSGSHGLTIAQRDDGVFVQEVTQNSPAARTGVVKEGDQIVGATIY-FDNLQSGEVTQLLN 75
G G G DDG+FV V PA++ +++ GD+I+ A Y F N++ G+ LL
Sbjct: 1298 GVGGRGNPFRPDDDGIFVTRVQPEGPASK--LLQPGDKIIQANGYSFINIEHGQAVSLLK 1355
Query: 76 TMGHHTVGLKLHRK 89
T +TV L + R+
Sbjct: 1356 TF-QNTVELIIVRE 1368
>gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens]
Length = 1066
Score = 37.0 bits (84), Expect = 0.006
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 1 MEKEETT-RELLLPNWQGSGSHGLTIAQRDD-----GVFVQEVTQNSPAARTGVVKEGDQ 54
M++EE E+ L GLT+ R D G+++ E+ NS AA+ G ++EGD+
Sbjct: 410 MDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDR 469
Query: 55 IV 56
I+
Sbjct: 470 II 471
Score = 30.8 bits (68), Expect = 0.44
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query: 3 KEETTRELLLPNWQGSGSHGLTI-----------AQRDDGVFVQEVTQNSPAARTGVVKE 51
K E T+ L L + SGS G I +G+FV ++ + PAA+ G ++
Sbjct: 241 KGEETKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQI 300
Query: 52 GDQIV 56
D+I+
Sbjct: 301 HDRII 305
>gi|142976783 PDZ domain containing RING finger 4 [Homo sapiens]
Length = 778
Score = 35.8 bits (81), Expect = 0.014
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 5/40 (12%)
Query: 22 GLTIAQRDD-----GVFVQEVTQNSPAARTGVVKEGDQIV 56
GLT+ R D G++V EV NS AA+ G ++EGD+I+
Sbjct: 157 GLTVCYRTDDEEDTGIYVSEVDPNSIAAKDGRIREGDRIL 196
>gi|55749523 syntenin isoform 3 [Homo sapiens]
Length = 297
Score = 35.4 bits (80), Expect = 0.018
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 2 EKEETTRELLLPNWQGSGSHGLTIAQRDDGVFVQEVTQNSPAARTGVVKEGDQIV 56
E ++ RE++L Q G GL + D+G+FVQ V NSPA+ G ++ GDQ++
Sbjct: 106 EIKQGIREVILCKDQ-DGKIGLRLKSIDNGIFVQLVQANSPASLVG-LRFGDQVL 158
>gi|55749515 syntenin isoform 3 [Homo sapiens]
Length = 297
Score = 35.4 bits (80), Expect = 0.018
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 2 EKEETTRELLLPNWQGSGSHGLTIAQRDDGVFVQEVTQNSPAARTGVVKEGDQIV 56
E ++ RE++L Q G GL + D+G+FVQ V NSPA+ G ++ GDQ++
Sbjct: 106 EIKQGIREVILCKDQ-DGKIGLRLKSIDNGIFVQLVQANSPASLVG-LRFGDQVL 158
>gi|55749504 syntenin isoform 2 [Homo sapiens]
Length = 292
Score = 35.4 bits (80), Expect = 0.018
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 2 EKEETTRELLLPNWQGSGSHGLTIAQRDDGVFVQEVTQNSPAARTGVVKEGDQIV 56
E ++ RE++L Q G GL + D+G+FVQ V NSPA+ G ++ GDQ++
Sbjct: 101 EIKQGIREVILCKDQ-DGKIGLRLKSIDNGIFVQLVQANSPASLVG-LRFGDQVL 153
>gi|55749490 syntenin isoform 1 [Homo sapiens]
Length = 298
Score = 35.4 bits (80), Expect = 0.018
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 2 EKEETTRELLLPNWQGSGSHGLTIAQRDDGVFVQEVTQNSPAARTGVVKEGDQIV 56
E ++ RE++L Q G GL + D+G+FVQ V NSPA+ G ++ GDQ++
Sbjct: 107 EIKQGIREVILCKDQ-DGKIGLRLKSIDNGIFVQLVQANSPASLVG-LRFGDQVL 159
>gi|56243522 syntenin isoform 1 [Homo sapiens]
Length = 298
Score = 35.4 bits (80), Expect = 0.018
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 2 EKEETTRELLLPNWQGSGSHGLTIAQRDDGVFVQEVTQNSPAARTGVVKEGDQIV 56
E ++ RE++L Q G GL + D+G+FVQ V NSPA+ G ++ GDQ++
Sbjct: 107 EIKQGIREVILCKDQ-DGKIGLRLKSIDNGIFVQLVQANSPASLVG-LRFGDQVL 159
>gi|148746189 multiple PDZ domain protein [Homo sapiens]
Length = 2041
Score = 35.0 bits (79), Expect = 0.023
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 2 EKEETTRELLLPNWQGSGSHGLTIAQ-------RDDGVFVQEVTQNSPAARTGVVKEGDQ 54
E+ ET L N QG G +TIA G+FV+ +T++S G ++ GDQ
Sbjct: 371 EESETFDVELTKNVQGLG---ITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQ 427
Query: 55 IVGATIYFDNLQSGEVTQLLNTMGH--HTVGLKLHRKG 90
I+ + NLQ Q + + H TV L L R+G
Sbjct: 428 II--AVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG 463
Score = 33.1 bits (74), Expect = 0.089
Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 9 ELLLPNWQGSGSH--GLTIAQRDD-GVFVQEVTQNSPAARTGVVKEGDQIV 56
ELL P G G GL R + G+FVQE+ + S A R G +KE DQI+
Sbjct: 139 ELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQIL 189
Score = 33.1 bits (74), Expect = 0.089
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 31 GVFVQEVTQNSPAARTGVVKEGDQIV 56
G+F++ V ++SPA + G +K GD+IV
Sbjct: 1184 GIFIKHVLEDSPAGKNGTLKPGDRIV 1209
Score = 31.2 bits (69), Expect = 0.34
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 5 ETTRELLLPNWQGSGSHGLTIAQRD--DGVFVQEVTQNSPAARTGVVKEGDQIV 56
+ + L LP QG G+ I++ D GV ++ +T++ AA G +K GDQI+
Sbjct: 1479 KNVQHLELPKDQGG--LGIAISEEDTLSGVIIKSLTEHGVAATDGRLKVGDQIL 1530
Score = 28.5 bits (62), Expect = 2.2
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 3 KEETTRELLLPNWQGSGSHGLTIA----QRDDGVFVQEVTQNSPAARTGVVKEGDQIV 56
KEE + L Q GL ++ + D GVFV ++ + A G + +GDQI+
Sbjct: 1716 KEEEVCDTLTIELQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQIL 1773
>gi|112382257 InaD-like [Homo sapiens]
Length = 1801
Score = 35.0 bits (79), Expect = 0.023
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 31 GVFVQEVTQNSPAARTGVVKEGDQIVGAT-IYFDNLQSGEVTQLLNTMGHHTV 82
G+F+++V ++SPA +T +K GD+I+ + + N E + + G+ V
Sbjct: 1101 GIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVV 1153
>gi|46559761 PDZ domain containing 4 [Homo sapiens]
Length = 769
Score = 33.9 bits (76), Expect = 0.052
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 22 GLTIAQRDD-----GVFVQEVTQNSPAARTGVVKEGDQIV 56
GL + R D G++V EV NS AA+ G ++EGD+I+
Sbjct: 143 GLMVCYRTDDEEDLGIYVGEVNPNSIAAKDGRIREGDRII 182
>gi|45827729 scribble isoform b [Homo sapiens]
Length = 1630
Score = 33.1 bits (74), Expect = 0.089
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 16/111 (14%)
Query: 1 MEKEETTRELLLPNWQGSGSHGLTIAQR---------DDGVFVQEVTQNSPAARTGVVKE 51
+E+EE T +L + +G G++IA D+G+F+ V++ PAAR G V+
Sbjct: 722 IEEEELTLTIL----RQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRV 776
Query: 52 GDQIVGAT-IYFDNLQSGEVTQLLNTMGHHTVGLKLHRKGDRSPEPGQTWT 101
GD+++ + + E + L G V +++ R+ PE T T
Sbjct: 777 GDKLLEVNGVALQGAEHHEAVEALRGAG-TAVQMRVWRERMVEPENAVTIT 826
Score = 27.7 bits (60), Expect = 3.7
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 29 DDGVFVQEVTQNSPAARTGVVKEGDQIVGAT-IYFDNLQSGEVTQLLNTMGHHTVGLKLH 87
D G+FV + + A R G ++ GD+++ + + LL T T+ L L
Sbjct: 889 DAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLL-TAASPTIALLLE 947
Query: 88 RK--GDRSPEP 96
R+ G P P
Sbjct: 948 REAGGPLPPSP 958
Score = 27.7 bits (60), Expect = 3.7
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 29 DDGVFVQEVTQNSPAARTGVVKEGDQIVGATIY-FDNLQSGEVTQLLNTMG 78
D+G+F+ +V+ A R G ++ G +++ L GE QLL ++G
Sbjct: 1131 DEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVG 1181
>gi|45827731 scribble isoform a [Homo sapiens]
Length = 1655
Score = 33.1 bits (74), Expect = 0.089
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 16/111 (14%)
Query: 1 MEKEETTRELLLPNWQGSGSHGLTIAQR---------DDGVFVQEVTQNSPAARTGVVKE 51
+E+EE T +L + +G G++IA D+G+F+ V++ PAAR G V+
Sbjct: 722 IEEEELTLTIL----RQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRV 776
Query: 52 GDQIVGAT-IYFDNLQSGEVTQLLNTMGHHTVGLKLHRKGDRSPEPGQTWT 101
GD+++ + + E + L G V +++ R+ PE T T
Sbjct: 777 GDKLLEVNGVALQGAEHHEAVEALRGAG-TAVQMRVWRERMVEPENAVTIT 826
Score = 27.7 bits (60), Expect = 3.7
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 29 DDGVFVQEVTQNSPAARTGVVKEGDQIVGAT-IYFDNLQSGEVTQLLNTMGHHTVGLKLH 87
D G+FV + + A R G ++ GD+++ + + LL T T+ L L
Sbjct: 889 DAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLL-TAASPTIALLLE 947
Query: 88 RK--GDRSPEP 96
R+ G P P
Sbjct: 948 REAGGPLPPSP 958
Score = 27.7 bits (60), Expect = 3.7
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 29 DDGVFVQEVTQNSPAARTGVVKEGDQIVGATIY-FDNLQSGEVTQLLNTMG 78
D+G+F+ +V+ A R G ++ G +++ L GE QLL ++G
Sbjct: 1131 DEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVG 1181
>gi|116875765 tight junction protein 1 isoform b [Homo sapiens]
Length = 1668
Score = 32.7 bits (73), Expect = 0.12
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 12 LPNWQGSGSHGLTIAQRDD-GVFVQEVTQNSPAARTGVVKEGDQIV 56
L ++ S GL +A +D G+FV V ++SPAA+ G ++EGDQI+
Sbjct: 424 LVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQIL 468
Score = 32.0 bits (71), Expect = 0.20
Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 3/36 (8%)
Query: 21 HGLTIAQRDDGVFVQEVTQNSPAARTGVVKEGDQIV 56
+GL +A +FV+E++Q+S AAR G ++EGD ++
Sbjct: 198 YGLRLASH---IFVKEISQDSLAARDGNIQEGDVVL 230
>gi|116875767 tight junction protein 1 isoform a [Homo sapiens]
Length = 1748
Score = 32.7 bits (73), Expect = 0.12
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 12 LPNWQGSGSHGLTIAQRDD-GVFVQEVTQNSPAARTGVVKEGDQIV 56
L ++ S GL +A +D G+FV V ++SPAA+ G ++EGDQI+
Sbjct: 424 LVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEG-LEEGDQIL 468
Score = 32.0 bits (71), Expect = 0.20
Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 3/36 (8%)
Query: 21 HGLTIAQRDDGVFVQEVTQNSPAARTGVVKEGDQIV 56
+GL +A +FV+E++Q+S AAR G ++EGD ++
Sbjct: 198 YGLRLASH---IFVKEISQDSLAARDGNIQEGDVVL 230
>gi|10092691 tight junction protein 3 [Homo sapiens]
Length = 952
Score = 32.7 bits (73), Expect = 0.12
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 20 SHGLTIAQRDD-GVFVQEVTQNSPAARTGVVKEGDQIVGAT-IYFDNLQSGEVTQLL 74
S GL +A +D G+FV V SPA G ++EGDQI+ + F NL E Q L
Sbjct: 424 SIGLRLAGGNDVGIFVSGVQAGSPADGQG-IQEGDQILQVNDVPFQNLTREEAVQFL 479
>gi|122937249 glutamate receptor interacting protein 2 [Homo
sapiens]
Length = 1141
Score = 32.7 bits (73), Expect = 0.12
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 22 GLTIA----QRDDGVFVQEVTQNSPAARTGVVKEGDQIVGA-TIYFDNLQSGEVTQLLNT 76
G+TI+ +R + + + ++ + S A RTG ++ GD+++ I DN + Q+L
Sbjct: 667 GITISSASRKRGEPLIISDIKKGSVAHRTGTLEPGDKLLAIDNIRLDNCPMEDAVQILRQ 726
Query: 77 MGHHTVGLKLHRKGDRSPE 95
V LK+ + D S E
Sbjct: 727 C-EDLVKLKIRKDEDNSDE 744
Score = 30.4 bits (67), Expect = 0.58
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 19 GSHGLTIAQRD---DGVFVQEVTQNSPAARTGVVKEGDQIVGA-TIYFDNLQSGEVTQLL 74
G G+TI+ + D + + +T+ A RTG + GD+I+ + E LL
Sbjct: 762 GPLGITISGTEEPFDPIVISGLTKRGLAERTGAIHVGDRILAINNVSLKGRPLSEAIHLL 821
Query: 75 NTMGHHTVGLKLHRKGDR 92
G TV LK+ ++ DR
Sbjct: 822 QVAG-ETVTLKIKKQLDR 838
>gi|95089461 discs large homolog 5 [Homo sapiens]
Length = 1919
Score = 32.3 bits (72), Expect = 0.15
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 14 NWQGSGSHGLTIAQRDDGVFVQEVTQNSPAARTGVVKEGDQIVGAT-IYFDNLQSGEVTQ 72
N G G+++ ++GV+ V SPAA+ G + GD+IV I DN E
Sbjct: 723 NLSGQKDSGISL---ENGVYAAAVLPGSPAAKEGSLAVGDRIVAINGIALDNKSLNECES 779
Query: 73 LLNT 76
LL +
Sbjct: 780 LLRS 783
>gi|29826294 golgi reassembly stacking protein 2 [Homo sapiens]
Length = 452
Score = 32.0 bits (71), Expect = 0.20
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 15 WQGSGSHGLTI------AQRDDGVFVQEVTQNSPAARTGVVKEGDQIVGATIYFDNLQSG 68
W G G G++I ++ V EV NSPAA G+ D I+GA + +S
Sbjct: 90 WGGQGLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTVMN--ESE 147
Query: 69 EVTQLLNTMGHHTVGLKLH 87
++ L+ T H LKL+
Sbjct: 148 DLFSLIET--HEAKPLKLY 164
>gi|134152672 syndecan binding protein 2 isoform a [Homo sapiens]
Length = 292
Score = 31.6 bits (70), Expect = 0.26
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 19 GSHGLTIAQRDDGVFVQEVTQNSPAARTGVVKEGDQIV 56
G GL + + D G+FVQ V N+PA+ G ++ GDQ++
Sbjct: 117 GKTGLRLRKVDQGLFVQLVQANTPASLVG-LRFGDQLL 153
>gi|38016916 syndecan binding protein 2 isoform b [Homo sapiens]
Length = 207
Score = 31.6 bits (70), Expect = 0.26
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 19 GSHGLTIAQRDDGVFVQEVTQNSPAARTGVVKEGDQIV 56
G GL + + D G+FVQ V N+PA+ G ++ GDQ++
Sbjct: 32 GKTGLRLRKVDQGLFVQLVQANTPASLVG-LRFGDQLL 68
>gi|110346438 FERM and PDZ domain containing 2 isoform 1 [Homo
sapiens]
Length = 1287
Score = 31.2 bits (69), Expect = 0.34
Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 3/119 (2%)
Query: 27 QRDDGVFVQEVTQNSPAARTGVVKEGDQIVGAT-IYFDNLQSGEVTQLLNTMGHHTVGLK 85
Q D G+F+ + PA + +K G QI+ I + +++ + +
Sbjct: 776 QADPGIFISSIIPGGPAEKAKTIKPGGQILALNHISLEGFTFNMAVRMIQNSPDNIELII 835
Query: 86 LHRKGDRSPEPGQTWTREVFSSCSSEVVLNTPQPSAL--ECKDQNKQKEASSQAGAVSV 142
KG P + S SS +L+ +L +DQ++ E AG S+
Sbjct: 836 SQSKGVGGNNPDEEKNSTANSGVSSTDILSFGYQGSLLSHTQDQDRNTEELDMAGVQSL 894
Score = 27.3 bits (59), Expect = 4.9
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 31 GVFVQEVTQNSPAARTGVVKEGDQIVGAT-IYFDNLQSGEVTQLLNTMGHHTVGLKLHRK 89
G++V+ + PAA+ G + +GD+++ + L + Q L G L L R+
Sbjct: 954 GIYVKSIVPGGPAAKEGQILQGDRLLQVDGVILCGLTHKQAVQCLTGPG-QVARLVLERR 1012
Query: 90 GDRSPE 95
RS +
Sbjct: 1013 VPRSTQ 1018
>gi|110346436 FERM and PDZ domain containing 2 isoform 3 [Homo
sapiens]
Length = 1309
Score = 31.2 bits (69), Expect = 0.34
Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 3/119 (2%)
Query: 27 QRDDGVFVQEVTQNSPAARTGVVKEGDQIVGAT-IYFDNLQSGEVTQLLNTMGHHTVGLK 85
Q D G+F+ + PA + +K G QI+ I + +++ + +
Sbjct: 798 QADPGIFISSIIPGGPAEKAKTIKPGGQILALNHISLEGFTFNMAVRMIQNSPDNIELII 857
Query: 86 LHRKGDRSPEPGQTWTREVFSSCSSEVVLNTPQPSAL--ECKDQNKQKEASSQAGAVSV 142
KG P + S SS +L+ +L +DQ++ E AG S+
Sbjct: 858 SQSKGVGGNNPDEEKNSTANSGVSSTDILSFGYQGSLLSHTQDQDRNTEELDMAGVQSL 916
Score = 27.3 bits (59), Expect = 4.9
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 31 GVFVQEVTQNSPAARTGVVKEGDQIVGAT-IYFDNLQSGEVTQLLNTMGHHTVGLKLHRK 89
G++V+ + PAA+ G + +GD+++ + L + Q L G L L R+
Sbjct: 976 GIYVKSIVPGGPAAKEGQILQGDRLLQVDGVILCGLTHKQAVQCLTGPG-QVARLVLERR 1034
Query: 90 GDRSPE 95
RS +
Sbjct: 1035 VPRSTQ 1040
>gi|188497758 ubiquitin associated protein 2-like isoform a [Homo
sapiens]
Length = 1087
Score = 30.8 bits (68), Expect = 0.44
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 93 SPEPGQTWTREVFSSCSSEVVLNTPQPSALECKDQNKQKEASSQAGAVSVSTPNA 147
SP P ++ + S SS+ ++PQP+ + K Q K+ +S+ A++V P +
Sbjct: 454 SPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKASLTSKIPALAVEMPGS 508
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.126 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,124,832
Number of Sequences: 37866
Number of extensions: 263460
Number of successful extensions: 654
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 560
Number of HSP's gapped (non-prelim): 136
length of query: 149
length of database: 18,247,518
effective HSP length: 93
effective length of query: 56
effective length of database: 14,725,980
effective search space: 824654880
effective search space used: 824654880
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.