Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ODF2L Sequence: fasta or formatted (513aa) NCBI GI: 55749708
Description:

outer dense fiber of sperm tails 2-like isoform b

Referenced in:

Testes and Sperm

Other entries for this name:
alt prot [644aa] outer dense fiber of sperm tails 2-like isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         30           2
 C cysteine            2.5         13           2
 D aspartate           2.3         12           1
 E glutamate          15.2         78           3
 F phenylalanine       1.4          7           1
 G glycine             1.4          7           1
 H histidine           2.7         14           1
 I isoleucine          4.7         24           2
 K lysine             13.5         69           3
 L leucine            11.9         61           2
 M methionine          2.3         12           1
 N asparagine          7.0         36           2
 P proline             0.0          0           0
 Q glutamine           7.6         39           2
 R arginine            3.5         18           2
 S serine              6.4         33           2
 T threonine           4.9         25           2
 V valine              4.9         25           2
 W tryptophan          0.4          2           1
 Y tyrosine            1.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   outer dense fiber of sperm tails 2-like isoform b [H... 
ODF2L                 1.000   outer dense fiber of sperm tails 2-like isoform a [H...
ODF2                  0.246   outer dense fiber of sperm tails 2 isoform 1 
ODF2                  0.141   outer dense fiber of sperm tails 2 isoform 2 
CENPF                 0.082   centromere protein F 
MYH13                 0.077   myosin, heavy polypeptide 13, skeletal muscle [Homo...
LOC440243             0.076   PREDICTED: Putative golgin subfamily A member 6-lik...
KIF20B                0.073   M-phase phosphoprotein 1 
MYH11                 0.073   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.073   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.073   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.073   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
LOC727832             0.073   golgi autoantigen, golgin subfamily a-like 
KIF5C                 0.071   kinesin family member 5C 
EEA1                  0.071   early endosome antigen 1, 162kD 
LOC283767             0.071   golgi autoantigen, golgin subfamily a-like 
TRIP11                0.069   thyroid hormone receptor interactor 11 
CCDC46                0.069   coiled-coil domain containing 46 isoform a 
CCDC88A               0.069   coiled-coil domain containing 88A isoform 2 
GOLGA4                0.069   golgi autoantigen, golgin subfamily a, 4 
CCDC88A               0.068   coiled-coil domain containing 88A isoform 1 
MYH7                  0.068   myosin, heavy chain 7, cardiac muscle, beta 
MYH3                  0.067   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH7B                 0.066   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
MYH9                  0.065   myosin, heavy polypeptide 9, non-muscle 
C14orf145             0.065   hypothetical protein LOC145508 
MYH8                  0.064   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH10                 0.064   myosin, heavy polypeptide 10, non-muscle 
MYO18A                0.064   myosin 18A isoform b 
MYO18A                0.064   myosin 18A isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press