Guide to the Human Genome
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Name: MYO18A Sequence: fasta or formatted (2039aa) NCBI GI: 42794779
Description:

myosin 18A isoform b

Referenced in:

Myosin
PDZ Domain

Other entries for this name:
alt prot [2054aa] myosin 18A isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2        168           3
 C cysteine            1.0         21           2
 D aspartate           5.8        119           4
 E glutamate          11.1        227           3
 F phenylalanine       2.7         55           2
 G glycine             5.1        104           2
 H histidine           2.3         46           2
 I isoleucine          2.9         59           2
 K lysine              7.5        153           3
 L leucine            12.1        246           2
 M methionine          2.3         46           2
 N asparagine          2.8         58           2
 P proline             3.0         62           3
 Q glutamine           6.4        130           2
 R arginine            7.7        157           3
 S serine              8.4        172           4
 T threonine           3.9         79           2
 V valine              4.5         92           2
 W tryptophan          0.8         16           2
 Y tyrosine            1.4         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   myosin 18A isoform b 
MYO18A                0.997   myosin 18A isoform a 
MYO18B                0.345   myosin XVIIIB 
MYH11                 0.146   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.145   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH11                 0.145   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.145   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH9                  0.143   myosin, heavy polypeptide 9, non-muscle 
MYH10                 0.141   myosin, heavy polypeptide 10, non-muscle 
MYH14                 0.128   myosin, heavy chain 14 isoform 2 
MYH14                 0.128   myosin, heavy chain 14 isoform 1 
MYH14                 0.127   myosin, heavy chain 14 isoform 3 
MYH7                  0.124   myosin, heavy chain 7, cardiac muscle, beta 
MYH6                  0.124   myosin heavy chain 6 
MYH1                  0.123   myosin, heavy chain 1, skeletal muscle, adult [Homo...
MYH13                 0.122   myosin, heavy polypeptide 13, skeletal muscle [Homo...
MYH2                  0.122   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.122   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH7B                 0.122   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
MYH8                  0.121   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH3                  0.121   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH4                  0.121   myosin, heavy polypeptide 4, skeletal muscle 
MYH15                 0.119   myosin, heavy polypeptide 15 
MYO5C                 0.070   myosin VC 
MYO5A                 0.068   myosin VA isoform 2 
MYO5A                 0.068   myosin VA isoform 1 
MYO5B                 0.066   myosin VB 
MYO10                 0.051   myosin X 
MYO7A                 0.051   myosin VIIA isoform 2 
MYO7A                 0.051   myosin VIIA isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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