Guide to the Human Genome
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Name: ODF2 Sequence: fasta or formatted (805aa) NCBI GI: 24430181
Description:

outer dense fiber of sperm tails 2 isoform 1

Referenced in:

Testes and Sperm

Other entries for this name:
alt prot [638aa] outer dense fiber of sperm tails 2 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         59           4
 C cysteine            1.4         11           1
 D aspartate           5.8         47           3
 E glutamate          12.4        100           2
 F phenylalanine       1.2         10           1
 G glycine             2.2         18           1
 H histidine           2.6         21           1
 I isoleucine          3.5         28           2
 K lysine             10.2         82           2
 L leucine            11.7         94           5
 M methionine          3.0         24           1
 N asparagine          3.5         28           1
 P proline             1.9         15           2
 Q glutamine           7.8         63           3
 R arginine            7.6         61           2
 S serine              7.3         59           2
 T threonine           4.6         37           1
 V valine              4.3         35           2
 W tryptophan          0.1          1           1
 Y tyrosine            1.5         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   outer dense fiber of sperm tails 2 isoform 1 
ODF2                  0.714   outer dense fiber of sperm tails 2 isoform 2 
ODF2L                 0.178   outer dense fiber of sperm tails 2-like isoform a [H...
ODF2L                 0.156   outer dense fiber of sperm tails 2-like isoform b [H...
MYH11                 0.069   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.069   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.069   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.069   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH9                  0.069   myosin, heavy polypeptide 9, non-muscle 
CCDC88A               0.064   coiled-coil domain containing 88A isoform 1 
MYH10                 0.063   myosin, heavy polypeptide 10, non-muscle 
MYH7                  0.063   myosin, heavy chain 7, cardiac muscle, beta 
MYH3                  0.063   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH7B                 0.063   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
EEA1                  0.062   early endosome antigen 1, 162kD 
MYH4                  0.062   myosin, heavy polypeptide 4, skeletal muscle 
CCDC88A               0.062   coiled-coil domain containing 88A isoform 2 
PLEC1                 0.062   plectin 1 isoform 11 
PLEC1                 0.062   plectin 1 isoform 10 
PLEC1                 0.062   plectin 1 isoform 8 
PLEC1                 0.062   plectin 1 isoform 7 
PLEC1                 0.062   plectin 1 isoform 6 
PLEC1                 0.062   plectin 1 isoform 3 
PLEC1                 0.062   plectin 1 isoform 2 
PLEC1                 0.062   plectin 1 isoform 1 
CENPE                 0.061   centromere protein E 
MYH6                  0.061   myosin heavy chain 6 
NUMA1                 0.060   nuclear mitotic apparatus protein 1 
CEP250                0.060   centrosomal protein 2 
AKAP9                 0.060   A-kinase anchor protein 9 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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