Guide to the Human Genome
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Name: ODF2L Sequence: fasta or formatted (644aa) NCBI GI: 55749696
Description:

outer dense fiber of sperm tails 2-like isoform a

Referenced in:

Testes and Sperm

Other entries for this name:
alt prot [513aa] outer dense fiber of sperm tails 2-like isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         36           2
 C cysteine            2.5         16           2
 D aspartate           3.0         19           1
 E glutamate          14.9         96           3
 F phenylalanine       1.7         11           1
 G glycine             1.4          9           1
 H histidine           3.0         19           1
 I isoleucine          4.8         31           2
 K lysine             13.0         84           3
 L leucine            13.0         84           3
 M methionine          2.0         13           1
 N asparagine          6.7         43           2
 P proline             0.3          2           1
 Q glutamine           6.5         42           2
 R arginine            3.3         21           2
 S serine              7.0         45           2
 T threonine           5.1         33           2
 V valine              4.5         29           2
 W tryptophan          0.3          2           1
 Y tyrosine            1.4          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   outer dense fiber of sperm tails 2-like isoform a [H... 
ODF2L                 0.793   outer dense fiber of sperm tails 2-like isoform b [H...
ODF2                  0.222   outer dense fiber of sperm tails 2 isoform 1 
ODF2                  0.139   outer dense fiber of sperm tails 2 isoform 2 
CENPF                 0.077   centromere protein F 
MYH13                 0.073   myosin, heavy polypeptide 13, skeletal muscle [Homo...
MYH11                 0.065   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.065   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.065   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.065   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
CENPE                 0.064   centromere protein E 
GOLGA4                0.064   golgi autoantigen, golgin subfamily a, 4 
MYH9                  0.063   myosin, heavy polypeptide 9, non-muscle 
LOC440243             0.063   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC727832             0.061   golgi autoantigen, golgin subfamily a-like 
CCDC88A               0.061   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.061   coiled-coil domain containing 88A isoform 1 
TRIP11                0.061   thyroid hormone receptor interactor 11 
MYH15                 0.060   myosin, heavy polypeptide 15 
MYH10                 0.060   myosin, heavy polypeptide 10, non-muscle 
MYH7                  0.060   myosin, heavy chain 7, cardiac muscle, beta 
EEA1                  0.060   early endosome antigen 1, 162kD 
KIF20B                0.060   M-phase phosphoprotein 1 
GOLGB1                0.059   golgi autoantigen, golgin subfamily b, macrogolgin ...
LOC283767             0.059   golgi autoantigen, golgin subfamily a-like 
GCC2                  0.059   GRIP and coiled-coil domain-containing 2 
MYH3                  0.059   myosin, heavy chain 3, skeletal muscle, embryonic [H...
CCDC18                0.058   sarcoma antigen NY-SAR-41 
KIF5C                 0.056   kinesin family member 5C 
MYH1                  0.056   myosin, heavy chain 1, skeletal muscle, adult [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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