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Search of human proteins with 54607137
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|54607137 T-cell receptor interacting molecule [Homo sapiens]
(186 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|54607137 T-cell receptor interacting molecule [Homo sapiens] 379 e-106
gi|226246554 hypothetical protein LOC643677 [Homo sapiens] 33 0.11
gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sap... 33 0.11
gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sap... 33 0.11
gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sap... 33 0.11
gi|51093863 hypothetical protein LOC64855 isoform 1 [Homo sapiens] 32 0.32
gi|79750824 hypothetical protein LOC64855 isoform 2 [Homo sapiens] 32 0.32
gi|152963644 paired-like homeodomain transcription factor 1 [Hom... 30 0.92
gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens] 30 0.92
gi|24234711 paired-like homeodomain transcription factor 2 isofo... 30 1.2
gi|7657577 SHP2-interacting transmembrane adaptor protein [Homo ... 30 1.2
gi|13376840 WD repeat domain 61 [Homo sapiens] 30 1.2
gi|21361183 paired-like homeodomain transcription factor 2 isofo... 30 1.6
gi|24234708 paired-like homeodomain transcription factor 2 isofo... 30 1.6
gi|151301098 zinc finger, DBF-type containing 2 [Homo sapiens] 30 1.6
gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [... 29 2.0
gi|119395734 breast cancer 2, early onset [Homo sapiens] 29 2.0
gi|4826912 paired-like homeodomain 3 [Homo sapiens] 29 2.7
gi|157412255 praja 2, RING-H2 motif containing [Homo sapiens] 29 2.7
gi|71274148 pleckstrin homology domain containing, family G (wit... 28 3.5
gi|24415404 MDN1, midasin homolog [Homo sapiens] 28 3.5
gi|46397375 ring finger protein 220 [Homo sapiens] 28 4.6
gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens] 28 5.9
gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapi... 28 5.9
gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sap... 28 5.9
gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapi... 28 5.9
gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapi... 28 5.9
gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapi... 28 5.9
gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapi... 28 5.9
gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapi... 28 5.9
>gi|54607137 T-cell receptor interacting molecule [Homo sapiens]
Length = 186
Score = 379 bits (974), Expect = e-106
Identities = 186/186 (100%), Positives = 186/186 (100%)
Query: 1 MSGISGCPFFLWGLLALLGLALVISLIFNISHYVEKQRQDKMYSYSSDHTRVDEYYIEDT 60
MSGISGCPFFLWGLLALLGLALVISLIFNISHYVEKQRQDKMYSYSSDHTRVDEYYIEDT
Sbjct: 1 MSGISGCPFFLWGLLALLGLALVISLIFNISHYVEKQRQDKMYSYSSDHTRVDEYYIEDT 60
Query: 61 PIYGNLDDMISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSVKGK 120
PIYGNLDDMISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSVKGK
Sbjct: 61 PIYGNLDDMISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSVKGK 120
Query: 121 RRKPRKQNTHFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLFGLIRA 180
RRKPRKQNTHFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLFGLIRA
Sbjct: 121 RRKPRKQNTHFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLFGLIRA 180
Query: 181 KREPIN 186
KREPIN
Sbjct: 181 KREPIN 186
>gi|226246554 hypothetical protein LOC643677 [Homo sapiens]
Length = 7081
Score = 33.5 bits (75), Expect = 0.11
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 58 EDTPIYGNLDDMISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSV 117
+D+P+ N+ +I +D + + +S+NK++ T + + +E + + +HSV
Sbjct: 6487 KDSPLASNMKTLI---VDVSSDSEETITKLQSINKLENGTSAVTSASEMLLPHTLQNHSV 6543
Query: 118 KGKRRKPRKQNTHFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIH 168
K K K HFS K + Q+ A V ++ + S + + IH
Sbjct: 6544 KEK----GKLLMHFSVKTLEIQMKAFPRIVRESYAMTSAHERKKPLSNCIH 6590
>gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 33.5 bits (75), Expect = 0.11
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 58 EDTPIYGNLDDMISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSV 117
+D+P+ N+ +I +D + + +S+NK++ T + + +E + + +HSV
Sbjct: 6335 KDSPLASNMKTLI---VDVSSDSEETITKLQSINKLENGTSAVTSASEMLLPHTLQNHSV 6391
Query: 118 KGKRRKPRKQNTHFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIH 168
K K K HFS K + Q+ A V ++ + S + + IH
Sbjct: 6392 KEK----GKLLMHFSVKTLEIQMKAFPRIVRESYAMTSAHERKKPLSNCIH 6438
>gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 33.5 bits (75), Expect = 0.11
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 58 EDTPIYGNLDDMISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSV 117
+D+P+ N+ +I +D + + +S+NK++ T + + +E + + +HSV
Sbjct: 6335 KDSPLASNMKTLI---VDVSSDSEETITKLQSINKLENGTSAVTSASEMLLPHTLQNHSV 6391
Query: 118 KGKRRKPRKQNTHFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIH 168
K K K HFS K + Q+ A V ++ + S + + IH
Sbjct: 6392 KEK----GKLLMHFSVKTLEIQMKAFPRIVRESYAMTSAHERKKPLSNCIH 6438
>gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 33.5 bits (75), Expect = 0.11
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 58 EDTPIYGNLDDMISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSV 117
+D+P+ N+ +I +D + + +S+NK++ T + + +E + + +HSV
Sbjct: 6335 KDSPLASNMKTLI---VDVSSDSEETITKLQSINKLENGTSAVTSASEMLLPHTLQNHSV 6391
Query: 118 KGKRRKPRKQNTHFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIH 168
K K K HFS K + Q+ A V ++ + S + + IH
Sbjct: 6392 KEK----GKLLMHFSVKTLEIQMKAFPRIVRESYAMTSAHERKKPLSNCIH 6438
>gi|51093863 hypothetical protein LOC64855 isoform 1 [Homo sapiens]
Length = 746
Score = 32.0 bits (71), Expect = 0.32
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 70 ISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQM 108
IS+ + YEQ KAR E+ ++K+Q+ P+ QA T M
Sbjct: 271 ISDAVYHMVYEQAKARFEEVLSKVQQVQPAMQAVIRTDM 309
>gi|79750824 hypothetical protein LOC64855 isoform 2 [Homo sapiens]
Length = 733
Score = 32.0 bits (71), Expect = 0.32
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 70 ISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQM 108
IS+ + YEQ KAR E+ ++K+Q+ P+ QA T M
Sbjct: 258 ISDAVYHMVYEQAKARFEEVLSKVQQVQPAMQAVIRTDM 296
>gi|152963644 paired-like homeodomain transcription factor 1 [Homo
sapiens]
Length = 314
Score = 30.4 bits (67), Expect = 0.92
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 120 KRRKPRKQNTHFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLF 175
K++K R+Q THF+ +QL ++A+ + D E AV N+ + +R++
Sbjct: 85 KKKKQRRQRTHFT----SQQLQELEATFQRNRYPDMSMREEIAVWTNLTEPRVRVW 136
>gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens]
Length = 1495
Score = 30.4 bits (67), Expect = 0.92
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 9/112 (8%)
Query: 75 DENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSVKGKRRKPRKQNTHFSDK 134
+E+ Y R ++V ++ ++ T + + + + RKPRK +++
Sbjct: 136 NEDGYRWQDTRGCRTVRRLFHKDLTSLETTSEMEAGSPENKKQRSRPRKPRKTRNEENEQ 195
Query: 135 DGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLFGLIRAKREPIN 186
DGD + ID SV T + Q EE + D I R KR P N
Sbjct: 196 DGDLEGPVIDESVLSTKELLGL----QQAEERLKRDCID-----RLKRRPRN 238
>gi|24234711 paired-like homeodomain transcription factor 2 isoform
a [Homo sapiens]
Length = 271
Score = 30.0 bits (66), Expect = 1.2
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 16/102 (15%)
Query: 74 MDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLDHSVKGKRRKPRKQNTHFSD 133
M+ NC + + A + +K Q Q NE + K+++ R+Q THF+
Sbjct: 1 METNCRKLVSACVQLEKDKSQ------QGKNE------DVGAEDPSKKKRQRRQRTHFT- 47
Query: 134 KDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLF 175
+QL ++A+ + D + E AV N+ + +R++
Sbjct: 48 ---SQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVW 86
>gi|7657577 SHP2-interacting transmembrane adaptor protein [Homo
sapiens]
Length = 196
Score = 30.0 bits (66), Expect = 1.2
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 13/102 (12%)
Query: 12 WGLLALLGLALVISLIFNISHYVEKQRQDKMYSYSSDHTRVDEYYIEDTPIYGNLDDMIS 71
WGL LLG ++L+F IS + + S S +E+ P+YGNL + +
Sbjct: 42 WGLWVLLG---AVTLLFLISLAAHLSQWTRGRSRSHPGQGRSGESVEEVPLYGNLHYLQT 98
Query: 72 EPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASL 113
+ ++ PE P+ A E MCY SL
Sbjct: 99 GRLSQD--------PEPDQQDPTLGGPARAA--EEVMCYTSL 130
>gi|13376840 WD repeat domain 61 [Homo sapiens]
Length = 305
Score = 30.0 bits (66), Expect = 1.2
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 133 DKDGDEQLHAIDAS-VSKTTLVDSFSPESQAVEENIHDDPIRLFGLIRAKRE 183
D + +Q+ +IDA V TL +FSP+SQ + H + +FG+ K+E
Sbjct: 92 DLENGKQIKSIDAGPVDAWTL--AFSPDSQYLATGTHVGKVNIFGVESGKKE 141
>gi|21361183 paired-like homeodomain transcription factor 2 isoform
c [Homo sapiens]
Length = 324
Score = 29.6 bits (65), Expect = 1.6
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 120 KRRKPRKQNTHFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLF 175
K+++ R+Q THF+ +QL ++A+ + D + E AV N+ + +R++
Sbjct: 88 KKKRQRRQRTHFT----SQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVW 139
>gi|24234708 paired-like homeodomain transcription factor 2 isoform
b [Homo sapiens]
Length = 317
Score = 29.6 bits (65), Expect = 1.6
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 120 KRRKPRKQNTHFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLF 175
K+++ R+Q THF+ +QL ++A+ + D + E AV N+ + +R++
Sbjct: 81 KKKRQRRQRTHFT----SQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVW 132
>gi|151301098 zinc finger, DBF-type containing 2 [Homo sapiens]
Length = 2354
Score = 29.6 bits (65), Expect = 1.6
Identities = 31/108 (28%), Positives = 42/108 (38%), Gaps = 28/108 (25%)
Query: 47 SDHTRVDEYYIEDTPIYGNLDDMISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNET 106
S+ DE +ED +SEP++E + +RP KS QE
Sbjct: 87 SEEEEEDEDKVEDEDATEERPSEVSEPIEE-----LHSRPHKSQEGTQEV---------- 131
Query: 107 QMCYASLDHSVKGKRRKPRKQNTHFSDKDGDEQLHAIDASVSKTTLVD 154
S+ SV K K ++Q F +H I ASV K LVD
Sbjct: 132 -----SVRPSVIQKLEKGQQQPLEF--------VHKIGASVRKCNLVD 166
>gi|56550039 myeloid/lymphoid or mixed-lineage leukemia protein [Homo
sapiens]
Length = 3969
Score = 29.3 bits (64), Expect = 2.0
Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 22 LVISLIFNISHYVEKQRQDKMYSYSSDHT---RVDEYYIEDTPIYGNLDDMISEPMDENC 78
+VI N+ ++ +++K Y R+D+ + D ++GN I+ + NC
Sbjct: 3854 MVIEYAGNVIRSIQTDKREKYYDSKGIGCYMFRIDDSEVVDATMHGNAARFINHSCEPNC 3913
Query: 79 YEQM 82
Y ++
Sbjct: 3914 YSRV 3917
>gi|119395734 breast cancer 2, early onset [Homo sapiens]
Length = 3418
Score = 29.3 bits (64), Expect = 2.0
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 33 YVEKQRQDKMYSYSSDHTRVDEYYIEDTPIYGNLDDMISEPMDENCYEQMKARPEKSVNK 92
Y+ YSY SD D Y+ + + EP+ +N +Q K ++
Sbjct: 1739 YLSNSSMSNSYSYHSDEVYNDSGYLSKNKLDSGI-----EPVLKNVEDQKNTSFSKVISN 1793
Query: 93 MQEATPSAQATNE 105
+++A Q NE
Sbjct: 1794 VKDANAYPQTVNE 1806
>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
Length = 302
Score = 28.9 bits (63), Expect = 2.7
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 121 RRKPRKQNTHFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHDDPIRLF 175
++K R+Q THF+ +QL ++A+ + D + E AV N+ + +R++
Sbjct: 59 KKKQRRQRTHFT----SQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVW 109
>gi|157412255 praja 2, RING-H2 motif containing [Homo sapiens]
Length = 708
Score = 28.9 bits (63), Expect = 2.7
Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 71 SEPMDENCYEQMKARP--EKSVNKMQEATPSAQATNETQMCYASLDHSVKGKRRKPRKQN 128
S P+D+ + + P EKS ++ + T E+ + ++ HS +G+ N
Sbjct: 79 SSPLDQ-VDSSLPSEPIFEKSETEIPTCGSALNQTTESSQSFVAVHHSEEGRDTLGSSTN 137
Query: 129 THFSDKDGDEQLHAIDASVSKTTL----VDSFSPESQAVEENIH 168
H + +G+ A AS + + DS+ P+ + E+N H
Sbjct: 138 LH-NHSEGEYIPGACSASSVQNGIALVHTDSYDPDGKHGEDNDH 180
>gi|71274148 pleckstrin homology domain containing, family G (with
RhoGef domain) member 1 [Homo sapiens]
Length = 1385
Score = 28.5 bits (62), Expect = 3.5
Identities = 40/137 (29%), Positives = 56/137 (40%), Gaps = 25/137 (18%)
Query: 58 EDTPIYGNLD---DMISEPMDENCYEQMKARPEKSVNKMQEATPSAQATNETQMCYASLD 114
E TP +++ D I D YE +K K + E+TPS A + + S
Sbjct: 642 EMTPFGSSIELTIDDIDHVYDNISYEDLKLMVAK--REEAESTPSKSARDSVRP--KSTP 697
Query: 115 HSVKGKRRKPRKQNTHFSDKDGDEQLHAIDASVSKTTLVDSFSPESQAVEENIHD----- 169
KR+ + + ++ DG L +AS T E QAVEENI+D
Sbjct: 698 ELAFTKRQAGHSKGSLYAQTDGT--LSGGEASSQSTH-------ELQAVEENIYDTIGLP 748
Query: 170 DP----IRLFGLIRAKR 182
DP + L RAKR
Sbjct: 749 DPPSLGFKCSSLKRAKR 765
>gi|24415404 MDN1, midasin homolog [Homo sapiens]
Length = 5596
Score = 28.5 bits (62), Expect = 3.5
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 11/142 (7%)
Query: 39 QDKMYSYSSDHTRVDEYYIEDTPIYGNLD--------DMISEPMDENCYEQMKARPEKSV 90
++++ Y + +V E D P NLD D +E +E ++K +PE++
Sbjct: 4860 ENEVDPYHGNQEKVPEPEALDLPDDLNLDSEDKNGGEDTDNEEGEEENPLEIKEKPEEAG 4919
Query: 91 NKMQEATPSAQATNETQMCYASLD-HSVKGKRRKPRKQNTHFSDKDGDEQLHAIDASVSK 149
++ +E + NE+Q + S K + +T D+DGD H + S +
Sbjct: 4920 HEAEERGETETDQNESQSPQEPEEGPSEDDKAEGEEEMDTGADDQDGDAAQHPEEHSEEQ 4979
Query: 150 TTLVDSFSPESQAVEENIHDDP 171
V+ + +A EE + P
Sbjct: 4980 QQSVE--EKDKEADEEGGENGP 4999
>gi|46397375 ring finger protein 220 [Homo sapiens]
Length = 566
Score = 28.1 bits (61), Expect = 4.6
Identities = 26/142 (18%), Positives = 54/142 (38%), Gaps = 2/142 (1%)
Query: 44 SYSSDHTRVDEYYIEDTPIYGNLDDMISEPMDENCYEQMKARPEKSVNKMQEATPSAQAT 103
S S +VD+ + + G + D + E+ ++ K + + P Q
Sbjct: 171 SSSPGSLKVDDTGKKIFAVSGLISDREASSSPEDRNDRCKKKAAALFDSQAPICPICQVL 230
Query: 104 NETQMCYASLDHSVKGKRRKPRKQNTHFSDK--DGDEQLHAIDASVSKTTLVDSFSPESQ 161
++ ++ + P +N+ D G + + AS+ + + SP S
Sbjct: 231 LRPSELQEHMEQELEQLAQLPSSKNSLLKDAMAPGTPKSLLLSASIKREGESPTASPHSS 290
Query: 162 AVEENIHDDPIRLFGLIRAKRE 183
A ++ H D + F +RA R+
Sbjct: 291 ATDDLHHSDRYQTFLRVRANRQ 312
>gi|4507321 suppressor of variegation 3-9 homolog 1 [Homo sapiens]
Length = 412
Score = 27.7 bits (60), Expect = 5.9
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 12 WGLLALLGL---ALVISLIFNISHYVEKQRQDKMY-----SYSSDHTRVDEYYIEDTPIY 63
WG+ L + + V+ + I E +R+ ++Y +Y D V++ Y D Y
Sbjct: 256 WGVRTLEKIRKNSFVMEYVGEIITSEEAERRGQIYDRQGATYLFDLDYVEDVYTVDAAYY 315
Query: 64 GNLDDMISEPMDEN 77
GN+ ++ D N
Sbjct: 316 GNISHFVNHSCDPN 329
>gi|115387123 protocadherin 15 isoform CD1-4 precursor [Homo sapiens]
Length = 1955
Score = 27.7 bits (60), Expect = 5.9
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 18/105 (17%)
Query: 79 YEQMKARPEKSVNK----MQEATPSAQATNETQMCYASLDHSVKGKRRKPRKQNTHFSDK 134
Y ++R SV++ Q P + T E A +D S+K + K ++ T SD+
Sbjct: 1461 YHFQQSRGNNSVSEDRKHQQVVMPFSSNTIEAHKS-AHVDGSLKSNKLKSARKFTFLSDE 1519
Query: 135 DGDEQLH-----------AIDASVS-KTTLVDSFSPESQAVEENI 167
D D H + ++ +S +T VD FSP+ QA +++
Sbjct: 1520 D-DLSAHNPLYKENISQVSTNSDISQRTDFVDPFSPKIQAKSKSL 1563
>gi|218505798 protocadherin 15 isoform CD1-10 precursor [Homo sapiens]
Length = 1932
Score = 27.7 bits (60), Expect = 5.9
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 18/105 (17%)
Query: 79 YEQMKARPEKSVNK----MQEATPSAQATNETQMCYASLDHSVKGKRRKPRKQNTHFSDK 134
Y ++R SV++ Q P + T E A +D S+K + K ++ T SD+
Sbjct: 1438 YHFQQSRGNNSVSEDRKHQQVVMPFSSNTIEAHKS-AHVDGSLKSNKLKSARKFTFLSDE 1496
Query: 135 DGDEQLH-----------AIDASVS-KTTLVDSFSPESQAVEENI 167
D D H + ++ +S +T VD FSP+ QA +++
Sbjct: 1497 D-DLSAHNPLYKENISQVSTNSDISQRTDFVDPFSPKIQAKSKSL 1540
>gi|218505785 protocadherin 15 isoform CD1-9 precursor [Homo sapiens]
Length = 1935
Score = 27.7 bits (60), Expect = 5.9
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 18/105 (17%)
Query: 79 YEQMKARPEKSVNK----MQEATPSAQATNETQMCYASLDHSVKGKRRKPRKQNTHFSDK 134
Y ++R SV++ Q P + T E A +D S+K + K ++ T SD+
Sbjct: 1441 YHFQQSRGNNSVSEDRKHQQVVMPFSSNTIEAHKS-AHVDGSLKSNKLKSARKFTFLSDE 1499
Query: 135 DGDEQLH-----------AIDASVS-KTTLVDSFSPESQAVEENI 167
D D H + ++ +S +T VD FSP+ QA +++
Sbjct: 1500 D-DLSAHNPLYKENISQVSTNSDISQRTDFVDPFSPKIQAKSKSL 1543
>gi|218505783 protocadherin 15 isoform CD1-8 precursor [Homo sapiens]
Length = 1915
Score = 27.7 bits (60), Expect = 5.9
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 18/105 (17%)
Query: 79 YEQMKARPEKSVNK----MQEATPSAQATNETQMCYASLDHSVKGKRRKPRKQNTHFSDK 134
Y ++R SV++ Q P + T E A +D S+K + K ++ T SD+
Sbjct: 1421 YHFQQSRGNNSVSEDRKHQQVVMPFSSNTIEAHKS-AHVDGSLKSNKLKSARKFTFLSDE 1479
Query: 135 DGDEQLH-----------AIDASVS-KTTLVDSFSPESQAVEENI 167
D D H + ++ +S +T VD FSP+ QA +++
Sbjct: 1480 D-DLSAHNPLYKENISQVSTNSDISQRTDFVDPFSPKIQAKSKSL 1523
>gi|218505781 protocadherin 15 isoform CD1-7 precursor [Homo sapiens]
Length = 1952
Score = 27.7 bits (60), Expect = 5.9
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 18/105 (17%)
Query: 79 YEQMKARPEKSVNK----MQEATPSAQATNETQMCYASLDHSVKGKRRKPRKQNTHFSDK 134
Y ++R SV++ Q P + T E A +D S+K + K ++ T SD+
Sbjct: 1458 YHFQQSRGNNSVSEDRKHQQVVMPFSSNTIEAHKS-AHVDGSLKSNKLKSARKFTFLSDE 1516
Query: 135 DGDEQLH-----------AIDASVS-KTTLVDSFSPESQAVEENI 167
D D H + ++ +S +T VD FSP+ QA +++
Sbjct: 1517 D-DLSAHNPLYKENISQVSTNSDISQRTDFVDPFSPKIQAKSKSL 1560
>gi|218505779 protocadherin 15 isoform CD1-6 precursor [Homo sapiens]
Length = 1886
Score = 27.7 bits (60), Expect = 5.9
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 18/105 (17%)
Query: 79 YEQMKARPEKSVNK----MQEATPSAQATNETQMCYASLDHSVKGKRRKPRKQNTHFSDK 134
Y ++R SV++ Q P + T E A +D S+K + K ++ T SD+
Sbjct: 1392 YHFQQSRGNNSVSEDRKHQQVVMPFSSNTIEAHKS-AHVDGSLKSNKLKSARKFTFLSDE 1450
Query: 135 DGDEQLH-----------AIDASVS-KTTLVDSFSPESQAVEENI 167
D D H + ++ +S +T VD FSP+ QA +++
Sbjct: 1451 D-DLSAHNPLYKENISQVSTNSDISQRTDFVDPFSPKIQAKSKSL 1494
>gi|218505777 protocadherin 15 isoform CD1-2 precursor [Homo sapiens]
Length = 1957
Score = 27.7 bits (60), Expect = 5.9
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 18/105 (17%)
Query: 79 YEQMKARPEKSVNK----MQEATPSAQATNETQMCYASLDHSVKGKRRKPRKQNTHFSDK 134
Y ++R SV++ Q P + T E A +D S+K + K ++ T SD+
Sbjct: 1463 YHFQQSRGNNSVSEDRKHQQVVMPFSSNTIEAHKS-AHVDGSLKSNKLKSARKFTFLSDE 1521
Query: 135 DGDEQLH-----------AIDASVS-KTTLVDSFSPESQAVEENI 167
D D H + ++ +S +T VD FSP+ QA +++
Sbjct: 1522 D-DLSAHNPLYKENISQVSTNSDISQRTDFVDPFSPKIQAKSKSL 1565
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,871,685
Number of Sequences: 37866
Number of extensions: 284423
Number of successful extensions: 963
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 958
Number of HSP's gapped (non-prelim): 44
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.