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Search of human proteins with 54144650
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|54144650 chemokine (C-X-C motif) ligand 3 [Homo sapiens]
(107 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|54144650 chemokine (C-X-C motif) ligand 3 [Homo sapiens] 209 4e-55
gi|4504155 chemokine (C-X-C motif) ligand 2 [Homo sapiens] 186 3e-48
gi|4504153 chemokine (C-X-C motif) ligand 1 [Homo sapiens] 184 1e-47
gi|4506849 chemokine (C-X-C motif) ligand 5 precursor [Homo sapi... 91 2e-19
gi|4506851 chemokine (C-X-C motif) ligand 6 (granulocyte chemota... 83 5e-17
gi|4505981 pro-platelet basic protein precursor [Homo sapiens] 82 7e-17
gi|4505733 platelet factor 4 (chemokine (C-X-C motif) ligand 4) ... 74 3e-14
gi|10834978 interleukin 8 precursor [Homo sapiens] 69 6e-13
gi|4505187 small inducible cytokine B9 precursor [Homo sapiens] 68 1e-12
gi|4505735 platelet factor 4 variant 1 [Homo sapiens] 64 2e-11
gi|221219042 pro-platelet basic protein-like 1 [Homo sapiens] 55 9e-09
gi|20149565 small inducible cytokine B14 precursor [Homo sapiens] 47 4e-06
gi|76563933 chemokine (C-X-C motif) ligand 12 (stromal cell-deri... 45 1e-05
gi|5453577 chemokine (C-X-C motif) ligand 13 (B-cell chemoattrac... 45 1e-05
gi|10834988 chemokine (C-X-C motif) ligand 12 (stromal cell-deri... 43 6e-05
gi|40316924 chemokine (C-X-C motif) ligand 12 (stromal cell-deri... 43 6e-05
gi|4885589 small inducible cytokine B11 precursor [Homo sapiens] 43 6e-05
gi|149999382 small inducible cytokine B10 precursor [Homo sapiens] 42 1e-04
gi|5174671 chemokine (C-C motif) ligand 26 precursor [Homo sapiens] 33 0.050
gi|4506831 small inducible cytokine A18 precursor [Homo sapiens] 33 0.065
gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens] 32 0.14
gi|47824887 chemokine (C-C motif) ligand 4-like 1 precursor [Hom... 30 0.55
gi|46275832 chemokine (C-C motif) ligand 4-like 2 precursor [Hom... 30 0.55
gi|4885587 small inducible cytokine A13 precursor [Homo sapiens] 29 0.71
gi|14602449 chemokine (C-C motif) ligand 15 precursor [Homo sapi... 28 1.2
gi|4506853 chemokine (C motif) ligand 1 [Homo sapiens] 28 2.1
gi|27477072 chemokine (C-C motif) ligand 3-like 1 precursor [Hom... 28 2.1
gi|93589094 chemokine (C-C motif) ligand 3-like 3 precursor [Hom... 28 2.1
gi|14589961 chemokine (C-C motif) ligand 14 isoform 1 precursor ... 27 2.7
gi|22165427 small inducible cytokine A24 precursor [Homo sapiens] 27 2.7
>gi|54144650 chemokine (C-X-C motif) ligand 3 [Homo sapiens]
Length = 107
Score = 209 bits (532), Expect = 4e-55
Identities = 107/107 (100%), Positives = 107/107 (100%)
Query: 1 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSV 60
MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSV
Sbjct: 1 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSV 60
Query: 61 NVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN 107
NVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN
Sbjct: 61 NVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN 107
>gi|4504155 chemokine (C-X-C motif) ligand 2 [Homo sapiens]
Length = 107
Score = 186 bits (473), Expect = 3e-48
Identities = 94/107 (87%), Positives = 100/107 (93%)
Query: 1 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSV 60
MA ATLSAAPSNPRLLRVALLLLLLVAASRRAAGA + TELRCQCLQTLQGIHLKNIQSV
Sbjct: 1 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV 60
Query: 61 NVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN 107
V+SPGPHCAQTEVIATLKNG+KACLNPASPMV+KIIEK+L G +N
Sbjct: 61 KVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN 107
>gi|4504153 chemokine (C-X-C motif) ligand 1 [Homo sapiens]
Length = 107
Score = 184 bits (467), Expect = 1e-47
Identities = 93/107 (86%), Positives = 99/107 (92%)
Query: 1 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSV 60
MA A LSAAPSNPRLLRVALLLLLLVAA RRAAGASV TELRCQCLQTLQGIH KNIQSV
Sbjct: 1 MARAALSAAPSNPRLLRVALLLLLLVAAGRRAAGASVATELRCQCLQTLQGIHPKNIQSV 60
Query: 61 NVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN 107
NV+SPGPHCAQTEVIATLKNG+KACLNPASP+V+KIIEK+LN +N
Sbjct: 61 NVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNSDKSN 107
>gi|4506849 chemokine (C-X-C motif) ligand 5 precursor [Homo
sapiens]
Length = 114
Score = 90.9 bits (224), Expect = 2e-19
Identities = 46/98 (46%), Positives = 68/98 (69%), Gaps = 2/98 (2%)
Query: 10 PSNPRLLRVALLLLLLVAASRRAAG--ASVVTELRCQCLQTLQGIHLKNIQSVNVRSPGP 67
PS+ + LLLLL +AG A+V+ ELRC CLQT QG+H K I ++ V + GP
Sbjct: 14 PSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHPKMISNLQVFAIGP 73
Query: 68 HCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGS 105
C++ EV+A+LKNGK+ CL+P +P ++K+I+KIL+ G+
Sbjct: 74 QCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGN 111
>gi|4506851 chemokine (C-X-C motif) ligand 6 (granulocyte
chemotactic protein 2) [Homo sapiens]
Length = 114
Score = 82.8 bits (203), Expect = 5e-17
Identities = 42/98 (42%), Positives = 64/98 (65%), Gaps = 2/98 (2%)
Query: 10 PSNPRLLRVALLLLLLVAASRRAAG--ASVVTELRCQCLQTLQGIHLKNIQSVNVRSPGP 67
PS +ALLLLL +AG ++V+TELRC CL+ ++ K I + V GP
Sbjct: 14 PSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNPKTIGKLQVFPAGP 73
Query: 68 HCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGS 105
C++ EV+A+LKNGK+ CL+P +P ++K+I+KIL+ G+
Sbjct: 74 QCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGN 111
>gi|4505981 pro-platelet basic protein precursor [Homo sapiens]
Length = 128
Score = 82.4 bits (202), Expect = 7e-17
Identities = 44/102 (43%), Positives = 60/102 (58%), Gaps = 16/102 (15%)
Query: 16 LRVALLLLLLVAA----------------SRRAAGASVVTELRCQCLQTLQGIHLKNIQS 59
L+V LLL LL+ A + + + ELRC C++T GIH KNIQS
Sbjct: 20 LQVLLLLSLLLTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHPKNIQS 79
Query: 60 VNVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKIL 101
+ V G HC Q EVIATLK+G+K CL+P +P ++KI++K L
Sbjct: 80 LEVIGKGTHCNQVEVIATLKDGRKICLDPDAPRIKKIVQKKL 121
>gi|4505733 platelet factor 4 (chemokine (C-X-C motif) ligand 4)
[Homo sapiens]
Length = 101
Score = 73.6 bits (179), Expect = 3e-14
Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 11 SNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSVNVRSPGPHCA 70
S P LL + LLLL LV A +A A +L+C C++T + ++I S+ V GPHC
Sbjct: 10 SRPGLLFLGLLLLPLVVAFA-SAEAEEDGDLQCLCVKTTSQVRPRHITSLEVIKAGPHCP 68
Query: 71 QTEVIATLKNGKKACLNPASPMVQKIIEKIL 101
++IATLKNG+K CL+ +P+ +KII+K+L
Sbjct: 69 TAQLIATLKNGRKICLDLQAPLYKKIIKKLL 99
>gi|10834978 interleukin 8 precursor [Homo sapiens]
Length = 99
Score = 69.3 bits (168), Expect = 6e-13
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 16 LRVALLLLLLVAAS--RRAAGASVVTELRCQCLQTL-QGIHLKNIQSVNVRSPGPHCAQT 72
L VALL L++A+ A ELRCQC++T + H K I+ + V GPHCA T
Sbjct: 5 LAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPHCANT 64
Query: 73 EVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN 107
E+I L +G++ CL+P VQ+++EK L + +
Sbjct: 65 EIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS 99
>gi|4505187 small inducible cytokine B9 precursor [Homo sapiens]
Length = 125
Score = 68.2 bits (165), Expect = 1e-12
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 5/86 (5%)
Query: 15 LLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQG-IHLKNIQSVNVRSPGPHCAQTE 73
L + ++LL+L+ G VV + RC C+ T QG IHL++++ + +P P C + E
Sbjct: 7 LFLLGIILLVLIGVQ----GTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEKIE 62
Query: 74 VIATLKNGKKACLNPASPMVQKIIEK 99
+IATLKNG + CLNP S V+++I+K
Sbjct: 63 IIATLKNGVQTCLNPDSADVKELIKK 88
>gi|4505735 platelet factor 4 variant 1 [Homo sapiens]
Length = 104
Score = 64.3 bits (155), Expect = 2e-11
Identities = 36/87 (41%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Query: 15 LLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSVNVRSPGPHCAQTEV 74
+L +ALLLL +V A RA A +L+C C++T + ++I S+ V GPHC ++
Sbjct: 17 MLFLALLLLPVVVAFARAE-AEEDGDLQCLCVKTTSQVRPRHITSLEVIKAGPHCPTAQL 75
Query: 75 IATLKNGKKACLNPASPMVQKIIEKIL 101
IATLKNG+K CL+ + + +KII++ L
Sbjct: 76 IATLKNGRKICLDLQALLYKKIIKEHL 102
>gi|221219042 pro-platelet basic protein-like 1 [Homo sapiens]
Length = 126
Score = 55.5 bits (132), Expect = 9e-09
Identities = 41/113 (36%), Positives = 64/113 (56%), Gaps = 15/113 (13%)
Query: 4 ATLSAAPSNP-RLLRVALLLLLLVAA--------SRRAAGAS----VVTELRCQCLQTLQ 50
AT S + P L+V LLL LL+ A S+R G S + EL C C+++
Sbjct: 7 ATPSCNSARPFHALQVLLLLSLLLTALPSCTNGQSKRNLGKSKDSDLYIELCCVCVKSAS 66
Query: 51 GIHLKNI-QSVNVRS-PGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKIL 101
GIH NI ++++ G C + +VIA LK+G+K L+P +P ++KI++K+L
Sbjct: 67 GIHPSNIIPNIHIYLLSGAPCNKVQVIAMLKDGRKMYLDPEAPRIKKIVQKML 119
>gi|20149565 small inducible cytokine B14 precursor [Homo sapiens]
Length = 111
Score = 46.6 bits (109), Expect = 4e-06
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 8 AAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSVNVRSPGP 67
A P + RLL ALLLLLL + R G+ +C+C + I +++ + ++ P
Sbjct: 8 APPVSMRLLAAALLLLLLALYTARVDGS------KCKCSRKGPKIRYSDVKKLEMKPKYP 61
Query: 68 HCAQTEVIATLKN-----GKKACLNPASPMVQKIIE 98
HC + VI T K+ G++ CL+P ++ I+
Sbjct: 62 HCEEKMVIITTKSVSRYRGQEHCLHPKLQSTKRFIK 97
>gi|76563933 chemokine (C-X-C motif) ligand 12 (stromal cell-derived
factor 1) isoform gamma [Homo sapiens]
Length = 119
Score = 45.1 bits (105), Expect = 1e-05
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 17 RVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSVNVRSPGPHCAQTEVIA 76
+V ++L+L++ A + G V RC C + N++ + + + P+CA +++A
Sbjct: 4 KVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNT-PNCA-LQIVA 61
Query: 77 TLKNG-KKACLNPASPMVQKIIEKILNKG 104
LKN ++ C++P +Q+ +EK LNKG
Sbjct: 62 RLKNNNRQVCIDPKLKWIQEYLEKALNKG 90
>gi|5453577 chemokine (C-X-C motif) ligand 13 (B-cell
chemoattractant) [Homo sapiens]
Length = 109
Score = 45.1 bits (105), Expect = 1e-05
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 14 RLLRVALLLLLLVAASRRAAGASVV--TELRCQCLQTLQG-IHLKNIQSVNVRSPGPHCA 70
+ + +LLL+LLV++ G V T LRC+C+Q I + I + + G C
Sbjct: 2 KFISTSLLLMLLVSSLSPVQGVLEVYYTSLRCRCVQESSVFIPRRFIDRIQILPRGNGCP 61
Query: 71 QTEVIATLKNGKKACLNPASPMVQKIIEKILNKGST 106
+ E+I KN C++P + +Q+++E + + S+
Sbjct: 62 RKEIIVWKKNKSIVCVDPQAEWIQRMMEVLRKRSSS 97
>gi|10834988 chemokine (C-X-C motif) ligand 12 (stromal cell-derived
factor 1) isoform beta [Homo sapiens]
Length = 93
Score = 42.7 bits (99), Expect = 6e-05
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 17 RVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSVNVRSPGPHCAQTEVIA 76
+V ++L+L++ A + G V RC C + N++ + + + P+CA +++A
Sbjct: 4 KVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNT-PNCA-LQIVA 61
Query: 77 TLKNG-KKACLNPASPMVQKIIEKILNK 103
LKN ++ C++P +Q+ +EK LNK
Sbjct: 62 RLKNNNRQVCIDPKLKWIQEYLEKALNK 89
>gi|40316924 chemokine (C-X-C motif) ligand 12 (stromal cell-derived
factor 1) isoform alpha [Homo sapiens]
Length = 89
Score = 42.7 bits (99), Expect = 6e-05
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 17 RVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSVNVRSPGPHCAQTEVIA 76
+V ++L+L++ A + G V RC C + N++ + + + P+CA +++A
Sbjct: 4 KVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNT-PNCA-LQIVA 61
Query: 77 TLKNG-KKACLNPASPMVQKIIEKILNK 103
LKN ++ C++P +Q+ +EK LNK
Sbjct: 62 RLKNNNRQVCIDPKLKWIQEYLEKALNK 89
>gi|4885589 small inducible cytokine B11 precursor [Homo sapiens]
Length = 94
Score = 42.7 bits (99), Expect = 6e-05
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 21 LLLLLVAASRRAAGASVVTELRCQCLQT-LQGIHLKNIQSVNVRSPGPHCAQTEVIATLK 79
+ L ++ + G + RC C+ ++ + + +I+ ++ P +C + EVI TLK
Sbjct: 8 IALAVILCATVVQGFPMFKRGRCLCIGPGVKAVKVADIEKASIMYPSNNCDKIEVIITLK 67
Query: 80 NGK-KACLNPASPMVQKIIEKILNK 103
K + CLNP S + II+K+ K
Sbjct: 68 ENKGQRCLNPKSKQARLIIKKVERK 92
>gi|149999382 small inducible cytokine B10 precursor [Homo sapiens]
Length = 98
Score = 42.0 bits (97), Expect = 1e-04
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 20 LLLLLLVAASRRAAGASVVTELRCQCLQ-TLQGIHLKNIQSVNVRSPGPHCAQTEVIATL 78
L+ L+ G + +RC C+ + Q ++ ++++ + + C + E+IAT+
Sbjct: 7 LICCLIFLTLSGIQGVPLSRTVRCTCISISNQPVNPRSLEKLEIIPASQFCPRVEIIATM 66
Query: 79 KN-GKKACLNPASPMVQKIIEKILNKGS 105
K G+K CLNP S ++ +++ + + S
Sbjct: 67 KKKGEKRCLNPESKAIKNLLKAVSKERS 94
>gi|5174671 chemokine (C-C motif) ligand 26 precursor [Homo
sapiens]
Length = 94
Score = 33.1 bits (74), Expect = 0.050
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 69 CAQTEVIATLKNGKKACLNPASPMVQKII 97
C+Q VI T K GKK C +P VQK I
Sbjct: 57 CSQRAVIFTTKRGKKVCTHPRKKWVQKYI 85
>gi|4506831 small inducible cytokine A18 precursor [Homo sapiens]
Length = 89
Score = 32.7 bits (73), Expect = 0.065
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 18 VALLLLLLVAASRRAAGASVVTELRCQCL-QTLQGIHLKNIQSVNVRSPGPHCAQTEVIA 76
+A LL+LV + A V T CL T I K I V+ P C + VI
Sbjct: 4 LAAALLVLVCTMALCSCAQVGTNKELCCLVYTSWQIPQKFI--VDYSETSPQCPKPGVIL 61
Query: 77 TLKNGKKACLNPASPMVQKIIEKI 100
K G++ C +P VQK I +
Sbjct: 62 LTKRGRQICADPNKKWVQKYISDL 85
>gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens]
Length = 981
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 1 MAHATLSAAPSNPRLLRVALLLLLLVAASRRA 32
+A A L+AAP+ PRL VA +L+L+ +A R A
Sbjct: 488 LALAALAAAPAGPRLALVAAVLVLVASALRSA 519
>gi|47824887 chemokine (C-C motif) ligand 4-like 1 precursor [Homo
sapiens]
Length = 92
Score = 29.6 bits (65), Expect = 0.55
Identities = 20/80 (25%), Positives = 34/80 (42%)
Query: 18 VALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSVNVRSPGPHCAQTEVIAT 77
V LL+L+ A A A + ++ C + L V+ C+Q V+
Sbjct: 7 VLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQPAVVFQ 66
Query: 78 LKNGKKACLNPASPMVQKII 97
K GK+ C +P+ VQ+ +
Sbjct: 67 TKRGKQVCADPSESWVQEYV 86
>gi|46275832 chemokine (C-C motif) ligand 4-like 2 precursor [Homo
sapiens]
Length = 92
Score = 29.6 bits (65), Expect = 0.55
Identities = 20/80 (25%), Positives = 34/80 (42%)
Query: 18 VALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSVNVRSPGPHCAQTEVIAT 77
V LL+L+ A A A + ++ C + L V+ C+Q V+
Sbjct: 7 VLSLLVLVAAFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCSQPAVVFQ 66
Query: 78 LKNGKKACLNPASPMVQKII 97
K GK+ C +P+ VQ+ +
Sbjct: 67 TKRGKQVCADPSESWVQEYV 86
>gi|4885587 small inducible cytokine A13 precursor [Homo sapiens]
Length = 98
Score = 29.3 bits (64), Expect = 0.71
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 20 LLLLLLVAASRRAAGASVVTELR----CQCLQTLQGIHLKNIQSVNVRSPGPHCAQTEVI 75
LL LLL+ A+ G + L C + + I L+ ++S + + C Q VI
Sbjct: 7 LLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTS--RCPQKAVI 64
Query: 76 ATLKNGKKACLNPASPMVQKIIEKILNKGST 106
K GK+ C +P VQ ++ + K T
Sbjct: 65 FRTKLGKEICADPKEKWVQNYMKHLGRKAHT 95
>gi|14602449 chemokine (C-C motif) ligand 15 precursor [Homo
sapiens]
Length = 113
Score = 28.5 bits (62), Expect = 1.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 69 CAQTEVIATLKNGKKACLNPASPMVQKIIEKI 100
C++ VI K G++ C P+ P VQ ++K+
Sbjct: 77 CSKPGVIFLTKKGRQVCAKPSGPGVQDCMKKL 108
>gi|4506853 chemokine (C motif) ligand 1 [Homo sapiens]
Length = 114
Score = 27.7 bits (60), Expect = 2.1
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 14 RLLRVALL-LLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSVNVRSPGPHCAQT 72
RLL +ALL + L A G+ V + C L T Q + + I++ +
Sbjct: 2 RLLILALLGICSLTAYIVEGVGSEVSDKRTCVSLTT-QRLPVSRIKTYTITEGSLRA--- 57
Query: 73 EVIATLKNGKKACLNPASPMVQKIIEKILNKGST 106
VI K G K C +P + V+ ++ + K +T
Sbjct: 58 -VIFITKRGLKVCADPQATWVRDVVRSMDRKSNT 90
>gi|27477072 chemokine (C-C motif) ligand 3-like 1 precursor [Homo
sapiens]
Length = 93
Score = 27.7 bits (60), Expect = 2.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 69 CAQTEVIATLKNGKKACLNPASPMVQKIIEKI 100
C++ VI K G++ C +P+ VQK + +
Sbjct: 58 CSKPSVIFLTKRGRQVCADPSEEWVQKYVSDL 89
>gi|93589094 chemokine (C-C motif) ligand 3-like 3 precursor [Homo
sapiens]
Length = 93
Score = 27.7 bits (60), Expect = 2.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 69 CAQTEVIATLKNGKKACLNPASPMVQKIIEKI 100
C++ VI K G++ C +P+ VQK + +
Sbjct: 58 CSKPSVIFLTKRGRQVCADPSEEWVQKYVSDL 89
>gi|14589961 chemokine (C-C motif) ligand 14 isoform 1 precursor
[Homo sapiens]
Length = 93
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/81 (18%), Positives = 31/81 (38%)
Query: 18 VALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSVNVRSPGPHCAQTEVIAT 77
+ LL+ +A + +S +C T + + ++ C++ ++
Sbjct: 8 IPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCSKPGIVFI 67
Query: 78 LKNGKKACLNPASPMVQKIIE 98
K G C NP+ VQ I+
Sbjct: 68 TKRGHSVCTNPSDKWVQDYIK 88
>gi|22165427 small inducible cytokine A24 precursor [Homo sapiens]
Length = 119
Score = 27.3 bits (59), Expect = 2.7
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 18 VALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSVNVRSPGPHCAQTEVIAT 77
V LL L V A SVV C + I + S + S C + VI T
Sbjct: 8 VTSLLFLGVCAHHIIPTGSVVIPSPCCMFFVSKRIPENRVVSYQLSSRST-CLKAGVIFT 66
Query: 78 LKNGKKACLNPASPMVQKIIEKI 100
K G++ C +P VQ+ ++ +
Sbjct: 67 TKKGQQFCGDPKQEWVQRYMKNL 89
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,931,911
Number of Sequences: 37866
Number of extensions: 137384
Number of successful extensions: 389
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 37
length of query: 107
length of database: 18,247,518
effective HSP length: 77
effective length of query: 30
effective length of database: 15,331,836
effective search space: 459955080
effective search space used: 459955080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.