Guide to the Human Genome
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Name: RABGGTA Sequence: fasta or formatted (567aa) NCBI GI: 53828918
Description:

Rab geranylgeranyltransferase alpha

Referenced in:

Prenylation and Related Modifications
Rab

Other entries for this name:
alt mRNA [567aa] Rab geranylgeranyltransferase alpha
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         38           2
 C cysteine            3.4         19           1
 D aspartate           4.9         28           2
 E glutamate           8.6         49           2
 F phenylalanine       2.8         16           2
 G glycine             3.0         17           1
 H histidine           2.6         15           2
 I isoleucine          1.6          9           2
 K lysine              3.5         20           1
 L leucine            18.3        104           3
 M methionine          1.1          6           1
 N asparagine          3.5         20           2
 P proline             5.5         31           2
 Q glutamine           6.2         35           2
 R arginine            7.1         40           2
 S serine              6.2         35           2
 T threonine           4.8         27           2
 V valine              6.2         35           1
 W tryptophan          2.3         13           1
 Y tyrosine            1.8         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Rab geranylgeranyltransferase alpha 
RABGGTA               1.000   Rab geranylgeranyltransferase alpha 
FNTA                  0.049   farnesyltransferase, CAAX box, alpha isoform b [Homo...
FNTA                  0.049   farnesyltransferase, CAAX box, alpha isoform a 
FNTA                  0.042   farnesyltransferase, CAAX box, alpha isoform c [Homo...
NISCH                 0.032   nischarin 
LRRC50                0.031   leucine rich repeat containing 50 
PTAR1                 0.028   protein prenyltransferase alpha subunit repeat cont...
LRDD                  0.027   leucine rich repeat and death domain containing prot...
LRDD                  0.027   leucine rich repeat and death domain containing prot...
LRDD                  0.027   leucine rich repeat and death domain containing prot...
MFHAS1                0.027   malignant fibrous histiocytoma amplified sequence 1...
LOC100129335          0.026   PREDICTED: Leucine-rich repeat-containing protein E...
LOC100129335          0.026   PREDICTED: Leucine-rich repeat-containing protein E...
LOC100129335          0.026   PREDICTED: Leucine-rich repeat-containing protein E...
LOC100129335          0.026   PREDICTED: Leucine-rich repeat-containing protein E...
LRRC57                0.024   leucine rich repeat containing 57 
LRRC1                 0.024   leucine rich repeat containing 1 
CHADL                 0.022   chondroadherin-like 
PPP1R7                0.022   protein phosphatase 1, regulatory subunit 7 
LRRC40                0.022   leucine rich repeat containing 40 
GP1BA                 0.022   platelet glycoprotein Ib alpha polypeptide precurso...
LRRC7                 0.021   leucine rich repeat containing 7 
STK11IP               0.021   LKB1 interacting protein 
SHOC2                 0.021   soc-2 suppressor of clear homolog 
RSU1                  0.020   ras suppressor protein 1 isoform 1 
LRRC30                0.020   leucine rich repeat containing 30 
LRRC32                0.020   leucine rich repeat containing 32 precursor 
LRRC32                0.020   leucine rich repeat containing 32 precursor 
PODN                  0.020   podocan 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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