Guide to the Human Genome
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Name: LOC100129335 Sequence: fasta or formatted (336aa) NCBI GI: 239749060
Description:

PREDICTED: Leucine-rich repeat-containing protein ENSP00000371558

Not currently referenced in the text

Other entries for this name:
alt mRNA {336aa} PREDICTED: Leucine-rich repeat-containing protein ENSP00000371558
alt mRNA {336aa} PREDICTED: Leucine-rich repeat-containing protein ENSP00000371558
alt mRNA {336aa} PREDICTED: Leucine-rich repeat-containing protein ENSP00000371558
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         17           1
 C cysteine            2.4          8           1
 D aspartate           4.8         16           2
 E glutamate           6.5         22           3
 F phenylalanine       3.9         13           1
 G glycine             4.2         14           2
 H histidine           3.9         13           2
 I isoleucine          4.5         15           2
 K lysine              6.2         21           2
 L leucine            12.2         41           3
 M methionine          2.7          9           1
 N asparagine          5.4         18           3
 P proline             3.9         13           1
 Q glutamine           3.3         11           1
 R arginine            8.0         27           2
 S serine              5.7         19           2
 T threonine           6.0         20           1
 V valine              6.5         22           2
 W tryptophan          1.8          6           1
 Y tyrosine            3.3         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: Leucine-rich repeat-containing protein E... 
LOC100129335          1.000   PREDICTED: Leucine-rich repeat-containing protein E...
LOC100129335          1.000   PREDICTED: Leucine-rich repeat-containing protein E...
LOC100129335          1.000   PREDICTED: Leucine-rich repeat-containing protein E...
SNRPA1                0.054   small nuclear ribonucleoprotein polypeptide A' [Homo...
LRRC49                0.045   leucine rich repeat containing 49 
C10orf11              0.044   chromosome 10 open reading frame 11 
LOC654258             0.044   PREDICTED: similar to leucine rich repeat containin...
RABGGTA               0.044   Rab geranylgeranyltransferase alpha 
RABGGTA               0.044   Rab geranylgeranyltransferase alpha 
LRRC36                0.044   leucine rich repeat containing 36 isoform 1 
LRRC48                0.041   leucine rich repeat containing 48 isoform b 
LRRC48                0.041   leucine rich repeat containing 48 isoform b 
LRRC48                0.041   leucine rich repeat containing 48 isoform a 
LRRC48                0.041   leucine rich repeat containing 48 isoform a 
PPP1R7                0.041   protein phosphatase 1, regulatory subunit 7 
CEP110                0.035   centrosomal protein 110kDa 
CEP72                 0.033   centrosomal protein 72 kDa 
LRGUK                 0.033   leucine-rich repeats and guanylate kinase domain con...
LRRC50                0.032   leucine rich repeat containing 50 
PODNL1                0.030   podocan-like 1 isoform 3 
PODNL1                0.030   podocan-like 1 isoform 2 
PODNL1                0.030   podocan-like 1 isoform 1 
SHOC2                 0.030   soc-2 suppressor of clear homolog 
LRRC67                0.030   leucine rich repeat containing 67 
LRRC6                 0.030   leucine rich repeat containing 6 
LRRIQ1                0.026   leucine-rich repeats and IQ motif containing 1 isof...
LRRIQ1                0.026   leucine-rich repeats and IQ motif containing 1 isof...
LRRC43                0.024   leucine rich repeat containing 43 isoform 1 
ASPN                  0.024   asporin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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