Guide to the Human Genome
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Name: FAM19A5 Sequence: fasta or formatted (132aa) NCBI GI: 131887988
Description:

family with sequence similarity 19 (chemokine (C-C motif)-like), member A5 isoform 1

Referenced in:

Additional Brain Proteins

Other entries for this name:
alt prot [125aa] family with sequence similarity 19 (chemokine (C-C motif)-like), ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         15           2
 C cysteine            6.8          9           1
 D aspartate           4.5          6           1
 E glutamate           2.3          3           1
 F phenylalanine       1.5          2           1
 G glycine             6.8          9           2
 H histidine           0.0          0           0
 I isoleucine          6.8          9           2
 K lysine              3.0          4           1
 L leucine             7.6         10           2
 M methionine          3.0          4           1
 N asparagine          0.8          1           1
 P proline             5.3          7           1
 Q glutamine           5.3          7           1
 R arginine            9.8         13           2
 S serine              8.3         11           2
 T threonine          11.4         15           3
 V valine              2.3          3           1
 W tryptophan          2.3          3           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 19 (chemokine (C-C ... 
FAM19A5               0.699   family with sequence similarity 19 (chemokine (C-C m...
FAM19A2               0.313   family with sequence similarity 19 (chemokine (C-C m...
FAM19A4               0.305   family with sequence similarity 19 (chemokine (C-C m...
FAM19A4               0.305   family with sequence similarity 19 (chemokine (C-C m...
FAM19A3               0.297   family with sequence similarity 19 (chemokine (C-C m...
FAM19A1               0.289   family with sequence similarity 19 (chemokine (C-C m...
FAM19A3               0.120   family with sequence similarity 19 (chemokine (C-C m...
AGRN                  0.020   agrin 
SCARF1                0.016   scavenger receptor class F, member 1 isoform 3 precu...
SCARF1                0.016   scavenger receptor class F, member 1 isoform 1 precu...
SCARF1                0.016   scavenger receptor class F, member 1 isoform 5 prec...
JAG1                  0.012   jagged 1 precursor 
FUT3                  0.012   fucosyltransferase 3 
FUT3                  0.012   fucosyltransferase 3 
FUT3                  0.012   fucosyltransferase 3 
FUT3                  0.012   fucosyltransferase 3 
NOTCH2                0.012   notch 2 preproprotein 
LOC100290115          0.012   PREDICTED: hypothetical protein XP_002347523 
LOC100290036          0.012   PREDICTED: hypothetical protein XP_002347522 
TPO                   0.008   thyroid peroxidase isoform d 
CUL9                  0.008   p53-associated parkin-like cytoplasmic protein [Homo...
DLL1                  0.008   delta-like 1 
TPO                   0.008   thyroid peroxidase isoform a 
TPO                   0.008   thyroid peroxidase isoform b 
TPO                   0.008   thyroid peroxidase isoform e 
LOC401847             0.008   PREDICTED: similar to hCG1793095 
LOC100291743          0.008   PREDICTED: hypothetical protein XP_002344931 
LOC100293270          0.008   PREDICTED: similar to hCG2042717 
LOC100289969          0.008   PREDICTED: hypothetical protein XP_002347692 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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