Guide to the Human Genome
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Name: FAM19A5 Sequence: fasta or formatted (125aa) NCBI GI: 53933210
Description:

family with sequence similarity 19 (chemokine (C-C motif)-like), member A5 isoform 2

Referenced in:

Additional Brain Proteins

Other entries for this name:
alt prot [132aa] family with sequence similarity 19 (chemokine (C-C motif)-like), ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         15           2
 C cysteine            8.0         10           2
 D aspartate           4.0          5           1
 E glutamate           3.2          4           1
 F phenylalanine       1.6          2           1
 G glycine             8.0         10           2
 H histidine           0.8          1           1
 I isoleucine          6.4          8           2
 K lysine              4.8          6           1
 L leucine            11.2         14           2
 M methionine          1.6          2           1
 N asparagine          0.8          1           1
 P proline             3.2          4           1
 Q glutamine           6.4          8           1
 R arginine            8.8         11           2
 S serine              3.2          4           2
 T threonine           9.6         12           3
 V valine              4.0          5           1
 W tryptophan          2.4          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 19 (chemokine (C-C m... 
FAM19A5               0.737   family with sequence similarity 19 (chemokine (C-C ...
FAM19A2               0.335   family with sequence similarity 19 (chemokine (C-C m...
FAM19A4               0.326   family with sequence similarity 19 (chemokine (C-C m...
FAM19A4               0.326   family with sequence similarity 19 (chemokine (C-C m...
FAM19A1               0.314   family with sequence similarity 19 (chemokine (C-C m...
FAM19A3               0.305   family with sequence similarity 19 (chemokine (C-C m...
FAM19A3               0.119   family with sequence similarity 19 (chemokine (C-C m...
AGRN                  0.030   agrin 
SCARF1                0.017   scavenger receptor class F, member 1 isoform 3 precu...
SCARF1                0.017   scavenger receptor class F, member 1 isoform 1 precu...
SCARF1                0.017   scavenger receptor class F, member 1 isoform 5 prec...
JAG1                  0.013   jagged 1 precursor 
LOC100290115          0.013   PREDICTED: hypothetical protein XP_002347523 
LOC100290036          0.013   PREDICTED: hypothetical protein XP_002347522 
TP53BP1               0.013   tumor protein p53 binding protein 1 isoform 1 [Homo...
TP53BP1               0.013   tumor protein p53 binding protein 1 isoform 2 [Homo...
TP53BP1               0.013   tumor protein p53 binding protein 1 isoform 3 
CUL9                  0.008   p53-associated parkin-like cytoplasmic protein [Homo...
DLL1                  0.008   delta-like 1 
LOC401847             0.008   PREDICTED: similar to hCG1793095 
LOC100293270          0.008   PREDICTED: similar to hCG2042717 
LOC100290320          0.008   PREDICTED: hypothetical protein XP_002347525 
LOC100289290          0.008   PREDICTED: hypothetical protein XP_002343511 
CRB1                  0.008   crumbs homolog 1 precursor 
LOC646057             0.004   PREDICTED: similar to hCG2003024 
LOC100290738          0.004   PREDICTED: hypothetical protein XP_002348171 
LOC646057             0.004   PREDICTED: similar to hCG2003024 
LOC100287372          0.004   PREDICTED: hypothetical protein XP_002343513 
LOC646057             0.004   PREDICTED: similar to hCG2003024 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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