Guide to the Human Genome
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Name: LOC100288747 Sequence: fasta or formatted (170aa) NCBI GI: 239743209
Description:

PREDICTED: hypothetical protein XP_002342803

Not currently referenced in the text

Other entries for this name:
alt mRNA {170aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         20           3
 C cysteine            1.8          3           1
 D aspartate           0.6          1           1
 E glutamate           5.3          9           1
 F phenylalanine       1.8          3           1
 G glycine            14.1         24           3
 H histidine           2.4          4           1
 I isoleucine          0.6          1           1
 K lysine              1.2          2           1
 L leucine             8.8         15           2
 M methionine          1.2          2           1
 N asparagine          0.6          1           1
 P proline            13.5         23           2
 Q glutamine           6.5         11           1
 R arginine           12.9         22           2
 S serine              9.4         16           1
 T threonine           3.5          6           1
 V valine              1.2          2           1
 W tryptophan          2.9          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342803 
LOC100292307          1.000   PREDICTED: hypothetical protein 
LOC100290778          1.000   PREDICTED: hypothetical protein XP_002346922 
LOC100288747          1.000   PREDICTED: hypothetical protein 
SH3BP1                0.057   SH3-domain binding protein 1 
SAMD1                 0.045   sterile alpha motif domain containing 1 
FLJ37078              0.042   hypothetical protein LOC222183 
TTLL10                0.039   tubulin tyrosine ligase-like family, member 10 isof...
COL2A1                0.036   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.036   collagen, type II, alpha 1 isoform 2 precursor [Hom...
FLJ31945              0.036   PREDICTED: hypothetical protein 
LOC100131091          0.036   PREDICTED: hypothetical protein 
LOC100131091          0.036   PREDICTED: hypothetical protein 
LOC100130360          0.036   PREDICTED: hypothetical protein 
SYN1                  0.036   synapsin I isoform Ia 
SYN1                  0.036   synapsin I isoform Ib 
LOC100127891          0.033   PREDICTED: hypothetical protein 
LOC100291839          0.033   PREDICTED: hypothetical protein XP_002345663 
LOC100288992          0.033   PREDICTED: hypothetical protein 
LOC100288992          0.033   PREDICTED: hypothetical protein XP_002344247 
RAVER1                0.030   RAVER1 
LOC100291301          0.030   PREDICTED: hypothetical protein XP_002347724 
SH3D20                0.030   SH3 domain containing 20 
ATN1                  0.030   atrophin-1 
ATN1                  0.030   atrophin-1 
RPH3A                 0.030   rabphilin 3A homolog isoform 1 
RPH3A                 0.030   rabphilin 3A homolog isoform 2 
LOC100292782          0.027   PREDICTED: hypothetical protein 
LOC100290372          0.027   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.027   PREDICTED: hypothetical protein XP_002342652 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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