Guide to the Human Genome
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Name: FAM19A3 Sequence: fasta or formatted (133aa) NCBI GI: 33300649
Description:

family with sequence similarity 19 (chemokine (C-C motif)-like), member A3 isoform 1

Referenced in:

Additional Brain Proteins

Other entries for this name:
alt prot [169aa] family with sequence similarity 19 (chemokine (C-C motif)-like), ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         10           2
 C cysteine            8.3         11           2
 D aspartate           1.5          2           1
 E glutamate           6.0          8           2
 F phenylalanine       0.8          1           1
 G glycine             6.0          8           2
 H histidine           2.3          3           1
 I isoleucine          2.3          3           1
 K lysine              4.5          6           1
 L leucine             9.8         13           2
 M methionine          1.5          2           1
 N asparagine          2.3          3           1
 P proline             4.5          6           2
 Q glutamine           5.3          7           2
 R arginine            6.8          9           1
 S serine              8.3         11           2
 T threonine           9.0         12           2
 V valine              8.3         11           1
 W tryptophan          5.3          7           2
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 19 (chemokine (C-C m... 
FAM19A3               0.624   family with sequence similarity 19 (chemokine (C-C m...
FAM19A4               0.586   family with sequence similarity 19 (chemokine (C-C m...
FAM19A4               0.586   family with sequence similarity 19 (chemokine (C-C m...
FAM19A2               0.570   family with sequence similarity 19 (chemokine (C-C m...
FAM19A1               0.521   family with sequence similarity 19 (chemokine (C-C m...
FAM19A5               0.281   family with sequence similarity 19 (chemokine (C-C ...
FAM19A5               0.274   family with sequence similarity 19 (chemokine (C-C m...
THBS2                 0.027   thrombospondin 2 precursor 
TECPR1                0.023   tectonin beta-propeller repeat containing 1 
CRB2                  0.023   crumbs homolog 2 
CRB1                  0.011   crumbs homolog 1 precursor 
AGRN                  0.011   agrin 
LRP1B                 0.011   low density lipoprotein-related protein 1B precursor...
NOTCH1                0.008   notch1 preproprotein 
RECQL4                0.008   RecQ protein-like 4 
LOC100132934          0.008   PREDICTED: similar to hCG1644233 
LOC100132934          0.008   PREDICTED: similar to hCG1644233 
LRP1                  0.008   low density lipoprotein-related protein 1 
SIK1                  0.008   SNF1-like kinase 
SSPO                  0.008   SCO-spondin 
RNF182                0.008   ring finger protein 182 
LY6K                  0.008   lymphocyte antigen 6 complex, locus K isoform 3 [Ho...
LOC100131199          0.008   PREDICTED: hypothetical protein 
LOC100293045          0.008   PREDICTED: hypothetical protein 
LOC100128160          0.008   PREDICTED: similar to mCG127065 
LOC100128160          0.004   PREDICTED: similar to mCG127065 
LOC100128160          0.004   PREDICTED: similar to mCG127065 
KCP                   0.004   cysteine rich BMP regulator 2 isoform 2 
KCP                   0.004   cysteine rich BMP regulator 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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