Guide to the Human Genome
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Name: TUSC1 Sequence: fasta or formatted (212aa) NCBI GI: 51944974
Description:

tumor suppressor candidate 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         22           2
 C cysteine            0.9          2           2
 D aspartate           5.2         11           1
 E glutamate           9.4         20           2
 F phenylalanine       0.9          2           1
 G glycine            15.1         32           5
 H histidine           0.9          2           1
 I isoleucine          0.5          1           1
 K lysine              1.4          3           1
 L leucine             9.4         20           2
 M methionine          1.9          4           1
 N asparagine          2.8          6           1
 P proline             6.6         14           1
 Q glutamine           4.2          9           2
 R arginine           18.9         40           2
 S serine              6.6         14           1
 T threonine           1.4          3           1
 V valine              0.9          2           1
 W tryptophan          1.9          4           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tumor suppressor candidate 1 
CCDC89                0.066   coiled-coil domain containing 89 
SPERT                 0.049   spermatid associated 
FAM98B                0.049   family with sequence similarity 98, member B isofor...
KIAA1211              0.046   hypothetical protein LOC57482 
POU4F1                0.046   POU domain, class 4, transcription factor 1 
MAF                   0.044   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
MAF                   0.044   v-maf musculoaponeurotic fibrosarcoma oncogene homolo...
LOC100287063          0.044   PREDICTED: hypothetical protein XP_002342368 
FBL                   0.044   fibrillarin 
ZIC2                  0.041   zinc finger protein of the cerebellum 2 
GAR1                  0.041   nucleolar protein family A, member 1 
GAR1                  0.041   nucleolar protein family A, member 1 
DHX36                 0.039   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2...
DHX36                 0.039   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1...
MLL4                  0.039   myeloid/lymphoid or mixed-lineage leukemia 4 
KRT24                 0.036   keratin 24 
BRWD3                 0.036   bromodomain and WD repeat domain containing 3 [Homo...
CCDC64B               0.036   coiled-coil domain containing 64B 
IRS4                  0.036   insulin receptor substrate 4 
LOC100291206          0.036   PREDICTED: hypothetical protein XP_002347014 
LOC100290709          0.036   PREDICTED: hypothetical protein XP_002346752 
KRT9                  0.034   keratin 9 
KIAA1543              0.034   NEZHA isoform 2 
KIAA1543              0.034   NEZHA isoform 1 
KRT1                  0.034   keratin 1 
LOC100292082          0.034   PREDICTED: hypothetical protein XP_002345881 
RBM15B                0.034   RNA binding motif protein 15B 
MYH7B                 0.034   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
LOC100170229          0.034   hypothetical protein LOC100170229 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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