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Search of human proteins with 133925805
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|133925805 RNA binding motif protein 9 isoform 6 [Homo
sapiens]
(450 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|133925805 RNA binding motif protein 9 isoform 6 [Homo sapiens] 918 0.0
gi|133925803 RNA binding motif protein 9 isoform 5 [Homo sapiens] 913 0.0
gi|72534682 RNA binding motif protein 9 isoform 1 [Homo sapiens] 757 0.0
gi|133925799 RNA binding motif protein 9 isoform 3 [Homo sapiens] 744 0.0
gi|133925801 RNA binding motif protein 9 isoform 4 [Homo sapiens] 596 e-170
gi|7657504 RNA binding motif protein 9 isoform 2 [Homo sapiens] 578 e-165
gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens] 461 e-130
gi|22538403 ataxin 2-binding protein 1 isoform 4 [Homo sapiens] 461 e-130
gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens] 457 e-129
gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens] 453 e-127
gi|22538405 ataxin 2-binding protein 1 isoform 1 [Homo sapiens] 443 e-124
gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens] 392 e-109
gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens] 389 e-108
gi|189181654 deleted in azoospermia [Homo sapiens] 64 2e-10
gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens] 64 2e-10
gi|221139802 RNA binding motif protein 24 isoform 1 [Homo sapiens] 61 2e-09
gi|62244004 modulator of estrogen induced transcription isoform ... 60 4e-09
gi|63176611 modulator of estrogen induced transcription isoform ... 60 4e-09
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 60 5e-09
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] 60 5e-09
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 60 5e-09
gi|37574731 boule isoform 1 [Homo sapiens] 59 7e-09
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 59 7e-09
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 59 9e-09
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 59 9e-09
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 59 9e-09
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 59 1e-08
gi|14719414 boule isoform 2 [Homo sapiens] 58 2e-08
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 58 2e-08
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 57 3e-08
>gi|133925805 RNA binding motif protein 9 isoform 6 [Homo sapiens]
Length = 450
Score = 918 bits (2372), Expect = 0.0
Identities = 450/450 (100%), Positives = 450/450 (100%)
Query: 1 MAEGAQPQQPPQLGPGAAARGMKRESELELPVPGAGGDGADPGLSKRPRTEEAAADGGGG 60
MAEGAQPQQPPQLGPGAAARGMKRESELELPVPGAGGDGADPGLSKRPRTEEAAADGGGG
Sbjct: 1 MAEGAQPQQPPQLGPGAAARGMKRESELELPVPGAGGDGADPGLSKRPRTEEAAADGGGG 60
Query: 61 MQNEPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDY 120
MQNEPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDY
Sbjct: 61 MQNEPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDY 120
Query: 121 AGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTP 180
AGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTP
Sbjct: 121 AGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTP 180
Query: 181 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 240
KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL
Sbjct: 181 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 240
Query: 241 HGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLG 300
HGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLG
Sbjct: 241 HGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLG 300
Query: 301 NDAAVPLSGRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVP 360
NDAAVPLSGRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVP
Sbjct: 301 NDAAVPLSGRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVP 360
Query: 361 PTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTAD 420
PTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTAD
Sbjct: 361 PTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTAD 420
Query: 421 PYHALAPAASYGVGAVASLYRGGYSRFAPY 450
PYHALAPAASYGVGAVASLYRGGYSRFAPY
Sbjct: 421 PYHALAPAASYGVGAVASLYRGGYSRFAPY 450
>gi|133925803 RNA binding motif protein 9 isoform 5 [Homo sapiens]
Length = 451
Score = 913 bits (2360), Expect = 0.0
Identities = 450/451 (99%), Positives = 450/451 (99%), Gaps = 1/451 (0%)
Query: 1 MAEGAQPQQPPQLGPGAAARGMKRESELELPVPGAGGDGADPGLSKRPRTEEAAADGGGG 60
MAEGAQPQQPPQLGPGAAARGMKRESELELPVPGAGGDGADPGLSKRPRTEEAAADGGGG
Sbjct: 1 MAEGAQPQQPPQLGPGAAARGMKRESELELPVPGAGGDGADPGLSKRPRTEEAAADGGGG 60
Query: 61 MQNEPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDY 120
MQNEPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDY
Sbjct: 61 MQNEPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDY 120
Query: 121 AGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLT-TEGGAQTDGQQSQTQSSENSESKST 179
AGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLT TEGGAQTDGQQSQTQSSENSESKST
Sbjct: 121 AGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKST 180
Query: 180 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 239
PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK
Sbjct: 181 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREK 240
Query: 240 LHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSL 299
LHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSL
Sbjct: 241 LHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSL 300
Query: 300 GNDAAVPLSGRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAV 359
GNDAAVPLSGRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAV
Sbjct: 301 GNDAAVPLSGRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAV 360
Query: 360 PPTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTA 419
PPTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTA
Sbjct: 361 PPTAIPAYPGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTA 420
Query: 420 DPYHALAPAASYGVGAVASLYRGGYSRFAPY 450
DPYHALAPAASYGVGAVASLYRGGYSRFAPY
Sbjct: 421 DPYHALAPAASYGVGAVASLYRGGYSRFAPY 451
>gi|72534682 RNA binding motif protein 9 isoform 1 [Homo sapiens]
Length = 380
Score = 757 bits (1955), Expect = 0.0
Identities = 372/373 (99%), Positives = 373/373 (100%)
Query: 78 SQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQA 137
+QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQA
Sbjct: 8 TQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQA 67
Query: 138 HGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDL 197
HGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDL
Sbjct: 68 HGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDL 127
Query: 198 RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 257
RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA
Sbjct: 128 RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 187
Query: 258 RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI 317
RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI
Sbjct: 188 RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI 247
Query: 318 PLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQDGFY 377
PLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQDGFY
Sbjct: 248 PLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQDGFY 307
Query: 378 GADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASYGVGAVA 437
GADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASYGVGAVA
Sbjct: 308 GADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASYGVGAVA 367
Query: 438 SLYRGGYSRFAPY 450
SLYRGGYSRFAPY
Sbjct: 368 SLYRGGYSRFAPY 380
>gi|133925799 RNA binding motif protein 9 isoform 3 [Homo sapiens]
Length = 376
Score = 744 bits (1920), Expect = 0.0
Identities = 367/373 (98%), Positives = 369/373 (98%), Gaps = 4/373 (1%)
Query: 78 SQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQA 137
+QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQA
Sbjct: 8 TQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQA 67
Query: 138 HGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDL 197
HGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDL
Sbjct: 68 HGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDL 127
Query: 198 RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 257
RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA
Sbjct: 128 RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 187
Query: 258 RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI 317
RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI
Sbjct: 188 RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI 247
Query: 318 PLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQDGFY 377
PLI +PGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQDGFY
Sbjct: 248 PLI----IPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQDGFY 303
Query: 378 GADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASYGVGAVA 437
GADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASYGVGAVA
Sbjct: 304 GADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASYGVGAVA 363
Query: 438 SLYRGGYSRFAPY 450
SLYRGGYSRFAPY
Sbjct: 364 SLYRGGYSRFAPY 376
>gi|133925801 RNA binding motif protein 9 isoform 4 [Homo sapiens]
Length = 370
Score = 596 bits (1536), Expect = e-170
Identities = 293/296 (98%), Positives = 294/296 (99%)
Query: 78 SQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQA 137
+QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQA
Sbjct: 8 TQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQA 67
Query: 138 HGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDL 197
HGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDL
Sbjct: 68 HGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDL 127
Query: 198 RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 257
RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA
Sbjct: 128 RQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 187
Query: 258 RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI 317
RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI
Sbjct: 188 RVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYI 247
Query: 318 PLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQ 373
PLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGV Q
Sbjct: 248 PLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVDMQ 303
>gi|7657504 RNA binding motif protein 9 isoform 2 [Homo sapiens]
Length = 367
Score = 578 bits (1489), Expect = e-165
Identities = 288/297 (96%), Positives = 290/297 (97%), Gaps = 5/297 (1%)
Query: 78 SQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQA 137
+QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQA
Sbjct: 8 TQGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQA 67
Query: 138 HGEQSSNSPSTQNGSLT-TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPD 196
HGEQSSNSPSTQNGSLT TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPD
Sbjct: 68 HGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPD 127
Query: 197 LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 256
LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT
Sbjct: 128 LRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 187
Query: 257 ARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTY 316
ARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTY
Sbjct: 188 ARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTY 247
Query: 317 IPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVVYQ 373
IPLI +PGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGV Q
Sbjct: 248 IPLI----IPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAVPPTAIPAYPGVDMQ 300
>gi|215272412 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
Length = 397
Score = 461 bits (1186), Expect = e-130
Identities = 260/410 (63%), Positives = 280/410 (68%), Gaps = 59/410 (14%)
Query: 79 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 133
+GNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 9 RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
Query: 134 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 190
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
Query: 191 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 250
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
Query: 251 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 308
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 246
Query: 309 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 367
L+ +PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY
Sbjct: 247 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 295
Query: 368 PGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HALA 426
GVVYQDGFYGAD+YGGYAAYRYAQP AT AAAYSD YGRVY ADPY HALA
Sbjct: 296 GGVVYQDGFYGADIYGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHALA 347
Query: 427 PAASYGVGAV--------------------------ASLYRGGYSRFAPY 450
PA +YGVGA+ AS+YRGGY+RFAPY
Sbjct: 348 PAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
>gi|22538403 ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
Length = 397
Score = 461 bits (1186), Expect = e-130
Identities = 260/410 (63%), Positives = 280/410 (68%), Gaps = 59/410 (14%)
Query: 79 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 133
+GNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 9 RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
Query: 134 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 190
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
Query: 191 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 250
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
Query: 251 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 308
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 246
Query: 309 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 367
L+ +PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY
Sbjct: 247 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 295
Query: 368 PGVVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HALA 426
GVVYQDGFYGAD+YGGYAAYRYAQP AT AAAYSD YGRVY ADPY HALA
Sbjct: 296 GGVVYQDGFYGADIYGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHALA 347
Query: 427 PAASYGVGAV--------------------------ASLYRGGYSRFAPY 450
PA +YGVGA+ AS+YRGGY+RFAPY
Sbjct: 348 PAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 397
>gi|22538407 ataxin 2-binding protein 1 isoform 2 [Homo sapiens]
Length = 392
Score = 457 bits (1177), Expect = e-129
Identities = 256/385 (66%), Positives = 275/385 (71%), Gaps = 34/385 (8%)
Query: 79 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 133
QGNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 29 QGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
Query: 134 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 190
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 88 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 146
Query: 191 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 250
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 147 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 206
Query: 251 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 308
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 207 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 266
Query: 309 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 367
L+ +PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY
Sbjct: 267 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 315
Query: 368 PGVVYQDGFYGAD-LYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HAL 425
GVVYQ+ YG L GGYAAYRYAQP AT AAAYSD YGRVY ADPY HAL
Sbjct: 316 GGVVYQEPVYGNKLLQGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHAL 367
Query: 426 APAASYGVGAVASLYRGGYSRFAPY 450
APA +YGVGA+AS+YRGGY+RFAPY
Sbjct: 368 APAPTYGVGAMASIYRGGYNRFAPY 392
>gi|215272410 ataxin 2-binding protein 1 isoform 5 [Homo sapiens]
Length = 370
Score = 453 bits (1166), Expect = e-127
Identities = 256/408 (62%), Positives = 270/408 (66%), Gaps = 82/408 (20%)
Query: 79 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 133
+GNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 9 RGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 67
Query: 134 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 190
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 68 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 126
Query: 191 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 250
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 127 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 186
Query: 251 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGR 310
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA
Sbjct: 187 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYA--------------------- 225
Query: 311 GGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAYPG 369
VPGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY G
Sbjct: 226 --------------VPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAYGG 270
Query: 370 VVYQDGFYGADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HALAPA 428
VVYQDGFYGAD+YGGYAAYRYAQP AT AAAYSD YGRVY ADPY HALAPA
Sbjct: 271 VVYQDGFYGADIYGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHALAPA 322
Query: 429 ASYGVGAV--------------------------ASLYRGGYSRFAPY 450
+YGVGA+ AS+YRGGY+RFAPY
Sbjct: 323 PTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 370
>gi|22538405 ataxin 2-binding protein 1 isoform 1 [Homo sapiens]
Length = 418
Score = 443 bits (1140), Expect = e-124
Identities = 256/411 (62%), Positives = 275/411 (66%), Gaps = 60/411 (14%)
Query: 79 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 133
QGNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 29 QGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
Query: 134 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 190
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 88 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 146
Query: 191 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 250
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 147 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 206
Query: 251 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 308
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 207 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 266
Query: 309 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 367
L+ +PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY
Sbjct: 267 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 315
Query: 368 PGVVYQDGFYGAD-LYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPY-HAL 425
GVVYQ+ YG L GGYAAYRYAQP AT AAAYSD YGRVY ADPY HAL
Sbjct: 316 GGVVYQEPVYGNKLLQGGYAAYRYAQPTPAT--------AAAYSDSYGRVYAADPYHHAL 367
Query: 426 APAASYGVGAV--------------------------ASLYRGGYSRFAPY 450
APA +YGVGA+ AS+YRGGY+RFAPY
Sbjct: 368 APAPTYGVGAMNAFAPLTDAKTRSHADDVGLVLSSLQASIYRGGYNRFAPY 418
>gi|22538409 ataxin 2-binding protein 1 isoform 3 [Homo sapiens]
Length = 395
Score = 392 bits (1008), Expect = e-109
Identities = 226/353 (64%), Positives = 242/353 (68%), Gaps = 33/353 (9%)
Query: 79 QGNQEPTTTPDAMVQPFTTIPFPPPPQNGIPTEYGVPHTQ---DYAGQTG--EHNLTLYG 133
QGNQE PD M QP+ + F PP QNGIP EY PH +Y GQT EH L LY
Sbjct: 29 QGNQEAAAAPDTMAQPYASAQFAPP-QNGIPAEYTAPHPHPAPEYTGQTTVPEHTLNLYP 87
Query: 134 STQAHGEQSSNSPSTQNGSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPF 190
Q H EQS S Q S T T+ A TDGQ QTQ SEN+E+KS PKRLHVSNIPF
Sbjct: 88 PAQTHSEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPF 146
Query: 191 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 250
RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI
Sbjct: 147 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 206
Query: 251 EVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAASSF--QADVSLGNDAAVPLS 308
EVNNATARVMTNKK V PY NGWKL+PVVGAVY PE YA + QA+ + + P S
Sbjct: 207 EVNNATARVMTNKKTVNPYTNGWKLNPVVGAVYSPEFYAGTVLLCQANQEGSSMYSAPSS 266
Query: 309 GRGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVR-AVPPTAIPAY 367
L+ +PGFPYP AAT AAA+RGAHLRGRGRTVY R A PP IPAY
Sbjct: 267 ----------LVYTSAMPGFPYP-AATAAAAYRGAHLRGRGRTVYNTFRAAAPPPPIPAY 315
Query: 368 PGVVYQDGFYGAD-LYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTA 419
GVVYQ+ YG L GGYAAYRYAQP AT AAAYSD V+ A
Sbjct: 316 GGVVYQEPVYGNKLLQGGYAAYRYAQPTPAT--------AAAYSDRNQFVFVA 360
>gi|128485756 hexaribonucleotide binding protein 3 [Homo sapiens]
Length = 312
Score = 389 bits (1000), Expect = e-108
Identities = 219/360 (60%), Positives = 238/360 (66%), Gaps = 62/360 (17%)
Query: 91 MVQPFTTIPFPPPPQNGIPTEYGVPH---TQDYAGQTG---EHNLTLYGSTQAHGEQSSN 144
M QP+ +PPPPQNGIP EY P TQDY+GQT EH +TLY Q H EQ +
Sbjct: 1 MAQPYPPAQYPPPPQNGIPAEYAPPPPHPTQDYSGQTPVPTEHGMTLYTPAQTHPEQPGS 60
Query: 145 SPSTQN--GSLT---TEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQ 199
STQ G+ T T+ AQTD SQ + K PKRLHVSNIPFRFRDPDLRQ
Sbjct: 61 EASTQPIAGTQTVPQTDEAAQTD---SQPLHPSDPTEKQQPKRLHVSNIPFRFRDPDLRQ 117
Query: 200 MFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 259
MFGQFGKILDVEIIFNERGSKGFGFVTFE S+DADRAREKL+GT+VEGRKIEVNNATARV
Sbjct: 118 MFGQFGKILDVEIIFNERGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNATARV 177
Query: 260 MTNKKMVTPYANGWKLSPVVGAVYGPELYAASSFQADVSLGNDAAVPLSGRGGINTYIPL 319
MTNKK PY NGWKL+PVVGAVYGPE YA
Sbjct: 178 MTNKKTGNPYTNGWKLNPVVGAVYGPEFYA------------------------------ 207
Query: 320 ISLPLVPGFPYPTAATTAAAFRGAHLRGRGRTVYGAVRAV-PPTAIPAYPGVVYQDGFYG 378
V GFPYPT TA A+RGAHLRGRGR VY RA PP IP Y VVYQDGFYG
Sbjct: 208 -----VTGFPYPTTG-TAVAYRGAHLRGRGRAVYNTFRAAPPPPPIPTYGAVVYQDGFYG 261
Query: 379 ADLYGGYAAYRYAQPATATAATAAAAAAAAYSDGYGRVY-TADPY-HALAPAASYGVGAV 436
A++YGGYAAYRYAQP AAAAAAYSD YGRVY ADPY H + PAA+Y +G +
Sbjct: 262 AEIYGGYAAYRYAQP---------AAAAAAYSDSYGRVYAAADPYHHTIGPAATYSIGTM 312
>gi|189181654 deleted in azoospermia [Homo sapiens]
Length = 744
Score = 64.3 bits (155), Expect = 2e-10
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 15/180 (8%)
Query: 92 VQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNG 151
VQP + PPPP + P+T+ Y + +T TQ QS+ +P T N
Sbjct: 124 VQPRPLVVNPPPPPQ-FQNVWRNPNTETYL----QPQITPNPVTQH--VQSAANPETPNS 176
Query: 152 SLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVE 211
+++ E Q+ + +Q E K P + V I R + ++ FG++G + +V+
Sbjct: 177 TISREASTQSSSAAA-SQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVK 235
Query: 212 IIFNERG-SKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATARVMTNKKMVTP 268
II N G SKG+GFV+F N D +K+ G+ + G+K+++ A + + V P
Sbjct: 236 IITNRTGVSKGYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQP 291
Score = 64.3 bits (155), Expect = 2e-10
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 15/180 (8%)
Query: 92 VQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNG 151
VQP + PPPP + P+T+ Y + +T TQ QS+ +P T N
Sbjct: 289 VQPRPLVVNPPPPPQ-FQNVWRNPNTETYL----QPQITPNPVTQH--VQSAANPETPNS 341
Query: 152 SLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVE 211
+++ E Q+ + +Q E K P + V I R + ++ FG++G + +V+
Sbjct: 342 TISREASTQSSSAAA-SQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVK 400
Query: 212 IIFNERG-SKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATARVMTNKKMVTP 268
II N G SKG+GFV+F N D +K+ G+ + G+K+++ A + + V P
Sbjct: 401 IITNRTGVSKGYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQP 456
Score = 57.0 bits (136), Expect = 3e-08
Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 8/130 (6%)
Query: 142 SSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMF 201
S+ +P T N +++ E Q+ + +Q E K P + V I R + ++ F
Sbjct: 2 SAANPETPNSTISREASTQSSSAAA-SQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCF 60
Query: 202 GQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR 258
G++G + +V+II N G SKG+GFV+F N D +K+ G+ + G+K+++ A +
Sbjct: 61 GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRK 116
Query: 259 VMTNKKMVTP 268
+ V P
Sbjct: 117 QKLCARHVQP 126
>gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens]
Length = 579
Score = 64.3 bits (155), Expect = 2e-10
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 15/180 (8%)
Query: 92 VQPFTTIPFPPPPQNGIPTEYGVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNG 151
VQP + PPPP + P+T+ Y + +T TQ QS+ +P T N
Sbjct: 124 VQPRPLVVNPPPPPQ-FQNVWRNPNTETYL----QPQITPNPVTQH--VQSAANPETPNS 176
Query: 152 SLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVE 211
+++ E Q+ + +Q E K P + V I R + ++ FG++G + +V+
Sbjct: 177 TISREASTQSSSAAA-SQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCFGRYGSVKEVK 235
Query: 212 IIFNERG-SKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATARVMTNKKMVTP 268
II N G SKG+GFV+F N D +K+ G+ + G+K+++ A + + V P
Sbjct: 236 IITNRTGVSKGYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRKQKLCARHVQP 291
Score = 57.0 bits (136), Expect = 3e-08
Identities = 37/130 (28%), Positives = 66/130 (50%), Gaps = 8/130 (6%)
Query: 142 SSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMF 201
S+ +P T N +++ E Q+ + +Q E K P + V I R + ++ F
Sbjct: 2 SAANPETPNSTISREASTQSSSAAA-SQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCF 60
Query: 202 GQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVV--EGRKIEVNNATAR 258
G++G + +V+II N G SKG+GFV+F N D +K+ G+ + G+K+++ A +
Sbjct: 61 GRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDV----QKIVGSQIHFHGKKLKLGPAIRK 116
Query: 259 VMTNKKMVTP 268
+ V P
Sbjct: 117 QKLCARHVQP 126
>gi|221139802 RNA binding motif protein 24 isoform 1 [Homo sapiens]
Length = 236
Score = 60.8 bits (146), Expect = 2e-09
Identities = 65/242 (26%), Positives = 101/242 (41%), Gaps = 29/242 (11%)
Query: 174 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSA 231
++ +T ++ V +P+ D LR+ F FG+I + +I + + S+G+GFVT + A
Sbjct: 4 TQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRA 63
Query: 232 DADRAREKLHGTVVEGRKIEVNNATARVMTNKKMVTPYANGWKLSPVVGAVYGPELYAAS 291
A+RA K +++GRK VN A + +++ P G +G + +
Sbjct: 64 AAERAC-KDPNPIIDGRKANVN--LAYLGAKPRIMQP-----------GFAFGVQQLHPA 109
Query: 292 SFQADVSLGNDAAVPLSG-RGGINTYIPLISLPLVPGFPYPTAATTAAAFRGAHLRGRGR 350
Q + P + + G+ IP + P T AA+
Sbjct: 110 LIQRPFGIPAHYVYPQAFVQPGV--VIPHVQPTAAAASTTPYIDYTGAAYAQYSAAAAAA 167
Query: 351 TVYGAVRAVPPTAIPAYPGVVYQDGFYGADLYGGYAAYR---YAQPATATAATAAAAAAA 407
A P A PA G V G+ GYA + A P TA AA AAAAAAA
Sbjct: 168 AAAAAYDQYPYAASPAAAGYVTAGGY-------GYAVQQPITAAAPGTAAAAAAAAAAAA 220
Query: 408 AY 409
A+
Sbjct: 221 AF 222
Score = 29.3 bits (64), Expect = 7.6
Identities = 23/47 (48%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 385 YAAYRYAQPATATAATAAAAAAAAYSDGYGRVYTADPYHALAPAASY 431
Y Y A A +AA AAAAAAAAY D Y PY A AA Y
Sbjct: 149 YIDYTGAAYAQYSAAAAAAAAAAAY-DQY-------PYAASPAAAGY 187
>gi|62244004 modulator of estrogen induced transcription isoform b
[Homo sapiens]
Length = 1016
Score = 60.1 bits (144), Expect = 4e-09
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 134 STQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFR 193
ST A G+ S+S +++ +++ + T S+ S ST K + VS + +
Sbjct: 326 STGASGQAKSSSKESKDSKTSSKD------DKGSTSSTSGSSGSST-KNIWVSGLSSNTK 378
Query: 194 DPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 251
DL+ +FG++GK+L +++ N R G+K +G VT +S + R LH T + G+ I
Sbjct: 379 AADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAHLHRTELHGQLIS 438
Query: 252 V 252
V
Sbjct: 439 V 439
>gi|63176611 modulator of estrogen induced transcription isoform a
[Homo sapiens]
Length = 1034
Score = 60.1 bits (144), Expect = 4e-09
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 9/121 (7%)
Query: 134 STQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFR 193
ST A G+ S+S +++ +++ + T S+ S ST K + VS + +
Sbjct: 344 STGASGQAKSSSKESKDSKTSSKD------DKGSTSSTSGSSGSST-KNIWVSGLSSNTK 396
Query: 194 DPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 251
DL+ +FG++GK+L +++ N R G+K +G VT +S + R LH T + G+ I
Sbjct: 397 AADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAHLHRTELHGQLIS 456
Query: 252 V 252
V
Sbjct: 457 V 457
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 59.7 bits (143), Expect = 5e-09
Identities = 32/102 (31%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Query: 159 AQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-ER 217
+Q + ++ ++ + + P RL+V ++ F + LR +F FG+I ++++ + E
Sbjct: 228 SQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSET 287
Query: 218 G-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 258
G SKG+GF+TF +S A +A E+L+G + GR ++V + T R
Sbjct: 288 GRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
Length = 530
Score = 59.7 bits (143), Expect = 5e-09
Identities = 32/102 (31%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Query: 159 AQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN-ER 217
+Q + ++ ++ + + P RL+V ++ F + LR +F FG+I ++++ + E
Sbjct: 228 SQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSET 287
Query: 218 G-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 258
G SKG+GF+TF +S A +A E+L+G + GR ++V + T R
Sbjct: 288 GRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 329
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 59.7 bits (143), Expect = 5e-09
Identities = 75/321 (23%), Positives = 119/321 (37%), Gaps = 72/321 (22%)
Query: 7 PQQPPQLGPGAAARGMKRESELELPVPG-----AGGDGADPGLSKRPRTEEAAADGGGGM 61
PQQPP P + +++ P A G G PG+ P +A
Sbjct: 79 PQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGVGSAPPASSSAP------ 132
Query: 62 QNEPLTPGYHGFPARDSQGNQEPTTTPD-AMVQPFTTIPFPPPPQNGIPT---EYGVPHT 117
P TP G P G PT TP A+ P P PP +G+PT + G P
Sbjct: 133 ---PATPPTSGAPPGSGPG---PTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGGPPP 186
Query: 118 QDYA------------GQTGEHNLTLYGSTQAHGEQSSNSPS-----TQNGSLTTEGGAQ 160
A G G + G + G ++P G GG Q
Sbjct: 187 PPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGEPRGGRQ 246
Query: 161 TD----------------GQQSQTQSSENSESKSTPK--------------RLHVSNIPF 190
G +S+ + S++ K+ RL V N+P
Sbjct: 247 HHPPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLFVGNLPA 306
Query: 191 RFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 250
+ + +++F ++G+ E+ N+ KGFGF+ E+ A A+ A+ +L T + GR++
Sbjct: 307 DITEDEFKRLFAKYGE--PGEVFINK--GKGFGFIKLESRALAEIAKAELDDTPMRGRQL 362
Query: 251 EVNNATARVMTNKKMVTPYAN 271
V AT + + ++PY +
Sbjct: 363 RVRFATHAAALSVRNLSPYVS 383
Score = 30.0 bits (66), Expect = 4.5
Identities = 50/248 (20%), Positives = 84/248 (33%), Gaps = 24/248 (9%)
Query: 4 GAQPQQPPQLGPGAAARGMKRESELELPVPGAGGDGADPGLSKRPRTEEAAADGGGGMQN 63
G P+Q P GPG G P PG G + PG +P GG +
Sbjct: 195 GPGPKQGP--GPGGPKGGKMPGG----PKPGGGPGLSTPGGHPKPPHRGGGEPRGGRQHH 248
Query: 64 EPLTPGYHGFPARDSQG--NQEPTTTPDAMVQPFTTIPFPPPPQ---------NGIPTEY 112
P +H P G ++E + + + + P +P +
Sbjct: 249 PPYHQQHHQGPPPGGPGGRSEEKISDSEGFKANLSLLRRPGEKTYTQRCRLFVGNLPADI 308
Query: 113 GVPHTQDYAGQTGEHNLTLYGSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSE 172
+ + GE + G S + + G+Q + + +
Sbjct: 309 TEDEFKRLFAKYGEPGEVFINKGKGFGFIKLESRALAEIAKAELDDTPMRGRQLRVRFAT 368
Query: 173 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSA 231
++ + L V N+ + L + F QFG I +I ++RG S G G V F +
Sbjct: 369 HAAA------LSVRNLSPYVSNELLEEAFSQFGPIERAVVIVDDRGRSTGKGIVEFASKP 422
Query: 232 DADRAREK 239
A +A E+
Sbjct: 423 AARKAFER 430
>gi|37574731 boule isoform 1 [Homo sapiens]
Length = 295
Score = 59.3 bits (142), Expect = 7e-09
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 19/150 (12%)
Query: 153 LTTEGGAQTDGQQSQTQSSENSESKST----------------PKRLHVSNIPFRFRDPD 196
+ TE G QT Q S + S P R+ V I F+ + D
Sbjct: 1 METESGPQTSNQMQTDSLSPSPNPVSPVPLNNPTSAPRYGTVIPNRIFVGGIDFKTNESD 60
Query: 197 LRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 255
LR+ F Q+G + +V+I+ + G SKG+GFVTFE DA + ++ + +K+ + A
Sbjct: 61 LRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQEAEKLNYKDKKLNIGPA 120
Query: 256 TAR--VMTNKKMVTPYANGWKLSPVVGAVY 283
+ V + + P A L+ G Y
Sbjct: 121 IRKQQVGIPRSSIMPAAGTMYLTTSTGYPY 150
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 59.3 bits (142), Expect = 7e-09
Identities = 31/96 (32%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 165 QSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFG 223
+ + ++ + +K P +++ N D L+ +FG+FG L V+++ +E G SKGFG
Sbjct: 176 RKEREAELGARAKEFPN-VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFG 234
Query: 224 FVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 259
FV+FE DA +A ++++G + G++I V A +V
Sbjct: 235 FVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV 270
Score = 55.8 bits (133), Expect = 8e-08
Identities = 29/82 (35%), Positives = 44/82 (53%)
Query: 177 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 236
KS + V N+ + L FG IL ++ +E GSKG+GFV FE A+RA
Sbjct: 95 KSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERA 154
Query: 237 REKLHGTVVEGRKIEVNNATAR 258
+K++G ++ GRK+ V +R
Sbjct: 155 IKKMNGMLLNGRKVFVGQFKSR 176
Score = 47.8 bits (112), Expect = 2e-05
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 160 QTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS 219
QT+ +++ Q ++ ++ L+V N+ D LR+ F FG I +++ S
Sbjct: 273 QTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRS 332
Query: 220 KGFGFVTFENSADADRAREKLHGTVVEGRKIEV 252
KGFGFV F + +A +A +++G +V + + V
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 58.9 bits (141), Expect = 9e-09
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 183 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLH 241
+++ N D L+++F QFGK L V+++ + G SKGFGFV++E DA++A E+++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 242 GTVVEGRKIEVNNATARV 259
G + G+ I V A +V
Sbjct: 253 GKEISGKIIFVGRAQKKV 270
Score = 54.7 bits (130), Expect = 2e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 177 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 236
KS + + N+ + L F FG IL +++ +E GSKG+ FV FE AD+A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 237 REKLHGTVVEGRKIEVNNATAR 258
EK++G ++ RK+ V +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176
Score = 48.1 bits (113), Expect = 2e-05
Identities = 25/93 (26%), Positives = 47/93 (50%)
Query: 160 QTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS 219
Q + ++ Q + S+ L++ N+ D LR+ F FG I +++ + S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 220 KGFGFVTFENSADADRAREKLHGTVVEGRKIEV 252
KGFGFV F + +A +A +++G +V + + V
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 37.4 bits (85), Expect = 0.028
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 173 NSESKSTPKR-LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFEN 229
N+ + S P L+V ++ + L + F G +L + + + R S G+ +V F+
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 230 SADADRAREKLHGTVVEGRKIEV 252
ADA+RA + ++ V++G+ I +
Sbjct: 62 PADAERALDTMNFDVIKGKPIRI 84
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 58.9 bits (141), Expect = 9e-09
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 183 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLH 241
+++ N D L+++F QFGK L V+++ + G SKGFGFV++E DA++A E+++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 242 GTVVEGRKIEVNNATARV 259
G + G+ I V A +V
Sbjct: 253 GKEISGKIIFVGRAQKKV 270
Score = 54.7 bits (130), Expect = 2e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 177 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 236
KS + + N+ + L F FG IL +++ +E GSKG+ FV FE AD+A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 237 REKLHGTVVEGRKIEVNNATAR 258
EK++G ++ RK+ V +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176
Score = 48.1 bits (113), Expect = 2e-05
Identities = 25/93 (26%), Positives = 47/93 (50%)
Query: 160 QTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS 219
Q + ++ Q + S+ L++ N+ D LR+ F FG I +++ + S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 220 KGFGFVTFENSADADRAREKLHGTVVEGRKIEV 252
KGFGFV F + +A +A +++G +V + + V
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 37.4 bits (85), Expect = 0.028
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 173 NSESKSTPKR-LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFEN 229
N+ + S P L+V ++ + L + F G +L + + + R S G+ +V F+
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 230 SADADRAREKLHGTVVEGRKIEV 252
ADA+RA + ++ V++G+ I +
Sbjct: 62 PADAERALDTMNFDVIKGKPIRI 84
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 58.9 bits (141), Expect = 9e-09
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 183 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLH 241
+++ N D L+++F QFGK L V+++ + G SKGFGFV++E DA++A E+++
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 242 GTVVEGRKIEVNNATARV 259
G + G+ I V A +V
Sbjct: 253 GKEISGKIIFVGRAQKKV 270
Score = 54.7 bits (130), Expect = 2e-07
Identities = 28/82 (34%), Positives = 44/82 (53%)
Query: 177 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 236
KS + + N+ + L F FG IL +++ +E GSKG+ FV FE AD+A
Sbjct: 95 KSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKA 154
Query: 237 REKLHGTVVEGRKIEVNNATAR 258
EK++G ++ RK+ V +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176
Score = 48.1 bits (113), Expect = 2e-05
Identities = 25/93 (26%), Positives = 47/93 (50%)
Query: 160 QTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS 219
Q + ++ Q + S+ L++ N+ D LR+ F FG I +++ + S
Sbjct: 273 QAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 220 KGFGFVTFENSADADRAREKLHGTVVEGRKIEV 252
KGFGFV F + +A +A +++G +V + + V
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 37.4 bits (85), Expect = 0.028
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 173 NSESKSTPKR-LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFEN 229
N+ + S P L+V ++ + L + F G +L + + + R S G+ +V F+
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 230 SADADRAREKLHGTVVEGRKIEV 252
ADA+RA + ++ V++G+ I +
Sbjct: 62 PADAERALDTMNFDVIKGKPIRI 84
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 58.5 bits (140), Expect = 1e-08
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 183 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLH 241
+++ N D L+ +FG+FG L V+++ +E G SKGFGFV+FE DA +A ++++
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 242 GTVVEGRKIEVNNATARV 259
G + G++I V A +V
Sbjct: 253 GKELNGKQIYVGRAQKKV 270
Score = 57.0 bits (136), Expect = 3e-08
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 177 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRA 236
KS + + N+ + L F FG IL +++ +E GSKG+GFV FE A+RA
Sbjct: 95 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 154
Query: 237 REKLHGTVVEGRKIEVNNATAR 258
EK++G ++ RK+ V +R
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKSR 176
Score = 47.0 bits (110), Expect = 4e-05
Identities = 26/93 (27%), Positives = 48/93 (51%)
Query: 160 QTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS 219
QT+ ++ Q ++ ++ L+V N+ D LR+ F FG I +++ S
Sbjct: 273 QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS 332
Query: 220 KGFGFVTFENSADADRAREKLHGTVVEGRKIEV 252
KGFGFV F + +A +A +++G +V + + V
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 35.8 bits (81), Expect = 0.081
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 183 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKL 240
L+V ++ + L + F G IL + + + R S G+ +V F+ ADA+RA + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 241 HGTVVEGRKIEV 252
+ V++G+ + +
Sbjct: 73 NFDVIKGKPVRI 84
>gi|14719414 boule isoform 2 [Homo sapiens]
Length = 283
Score = 58.2 bits (139), Expect = 2e-08
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 180 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRARE 238
P R+ V I F+ + DLR+ F Q+G + +V+I+ + G SKG+GFVTFE DA + +
Sbjct: 32 PNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTFETQEDAQKILQ 91
Query: 239 KLHGTVVEGRKIEVNNATAR--VMTNKKMVTPYANGWKLSPVVGAVY 283
+ + +K+ + A + V + + P A L+ G Y
Sbjct: 92 EAEKLNYKDKKLNIGPAIRKQQVGIPRSSIMPAAGTMYLTTSTGYPY 138
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 58.2 bits (139), Expect = 2e-08
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 16/97 (16%)
Query: 173 NSESKSTPKRLHVSN--------------IPFRFRDPDLRQMFGQFGKILDVEIIFNE-- 216
+S S + +R HV N + + DLR++F ++G I DV I++++
Sbjct: 96 HSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS 155
Query: 217 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 253
R S+GF FV FEN DA A+E+ +G ++GR+I V+
Sbjct: 156 RRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 192
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 57.4 bits (137), Expect = 3e-08
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 9/148 (6%)
Query: 139 GEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLR 198
G P T G + E +G Q +S +NS+S ++ V IP + +LR
Sbjct: 77 GRNIDPKPCTPRG-MQPERTRPKEGWQKGPRS-DNSKSN----KIFVGGIPHNCGETELR 130
Query: 199 QMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 256
+ F +FG + +V +I++ ++ +GFGF+TFE+ D+A +H + G+K+EV A
Sbjct: 131 EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA-VNMHFHDIMGKKVEVKRAE 189
Query: 257 ARVMTNKKMVTPYANGWKLSPVVGAVYG 284
R ++ P A+ W V A G
Sbjct: 190 PRDSKSQAPGQPGASQWGSRVVPNAANG 217
Score = 32.0 bits (71), Expect = 1.2
Identities = 38/143 (26%), Positives = 47/143 (32%), Gaps = 15/143 (10%)
Query: 2 AEGAQPQQPPQLGPGAAARGMKRESELELPV--PGAGGDGADPGLSKRPRTEEAAADGGG 59
A G Q PP G +GM + + P G GA P P T + G
Sbjct: 215 ANGWAGQPPPTWQQGYGPQGMWVPAGQAIGGYGPPPAGRGAPP--PPPPFTSYIVSTPPG 272
Query: 60 GMQNEPLTPGYHGFPARDSQGNQEPTTTPDAMVQPFTTIP----------FPPPPQNGIP 109
G P +G P + S G P PD P P FPPPP P
Sbjct: 273 GFPPPQGFPQGYGAPPQFSFGYGPPPPPPDQFAPPGVPPPPATPGAAPLAFPPPPSQAAP 332
Query: 110 TEYGVPHTQDYAGQTGEHNLTLY 132
+ P T G++ L Y
Sbjct: 333 -DMSKPPTAQPDFPYGQYGLGSY 354
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.132 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,483,534
Number of Sequences: 37866
Number of extensions: 1156508
Number of successful extensions: 7010
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 462
Number of HSP's that attempted gapping in prelim test: 5164
Number of HSP's gapped (non-prelim): 1857
length of query: 450
length of database: 18,247,518
effective HSP length: 106
effective length of query: 344
effective length of database: 14,233,722
effective search space: 4896400368
effective search space used: 4896400368
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.