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Search of human proteins with 13386490
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13386490 LIM domain containing 2 [Homo sapiens]
(127 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13386490 LIM domain containing 2 [Homo sapiens] 272 6e-74
gi|165905591 LIM domain and actin binding 1 isoform c [Homo sapi... 141 2e-34
gi|165905589 LIM domain and actin binding 1 isoform a [Homo sapi... 141 2e-34
gi|7705373 LIM domain and actin binding 1 isoform b [Homo sapiens] 141 2e-34
gi|119372315 xin actin-binding repeat containing 2 isoform 2 [Ho... 140 3e-34
gi|170172518 microtubule associated monoxygenase, calponin and L... 69 1e-12
gi|209862793 microtubule associated monoxygenase, calponin and L... 69 1e-12
gi|209862789 microtubule associated monoxygenase, calponin and L... 69 1e-12
gi|7662284 microtubule associated monoxygenase, calponin and LIM... 67 5e-12
gi|4758086 cysteine and glycine-rich protein 1 isoform 1 [Homo s... 54 4e-08
gi|189083753 cysteine and glycine-rich protein 3 [Homo sapiens] 53 7e-08
gi|4502893 cysteine and glycine-rich protein 3 [Homo sapiens] 53 7e-08
gi|47087157 nebulette non-muscle isoform [Homo sapiens] 51 3e-07
gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens] 51 3e-07
gi|221316627 cysteine and glycine-rich protein 1 isoform 2 [Homo... 50 4e-07
gi|5453710 LIM and SH3 protein 1 [Homo sapiens] 50 5e-07
gi|31324577 molecule interacting with Rab13 [Homo sapiens] 50 5e-07
gi|4503101 cysteine and glycine-rich protein 2 [Homo sapiens] 50 6e-07
gi|205360947 microtubule associated monoxygenase, calponin and L... 48 2e-06
gi|226530313 microtubule associated monoxygenase, calponin and L... 48 2e-06
gi|116517305 cysteine-rich protein 3 [Homo sapiens] 46 9e-06
gi|238859658 LIM and senescent cell antigen-like domains 2 isofo... 44 3e-05
gi|238776788 LIM and senescent cell antigen-like domains 2 isofo... 44 3e-05
gi|238776786 LIM and senescent cell antigen-like domains 2 isofo... 44 3e-05
gi|40804748 LIM and senescent cell antigen-like domains 2 isofor... 44 3e-05
gi|66932988 filamin-binding LIM protein-1 isoform c [Homo sapiens] 44 3e-05
gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens] 44 3e-05
gi|66932982 filamin-binding LIM protein-1 isoform a [Homo sapiens] 44 3e-05
gi|4503049 cysteine-rich protein 2 [Homo sapiens] 44 3e-05
gi|13518026 LIM and senescent cell antigen-like domains 1 [Homo ... 44 4e-05
>gi|13386490 LIM domain containing 2 [Homo sapiens]
Length = 127
Score = 272 bits (695), Expect = 6e-74
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MFQAAGAAQATPSHDAKGGGSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIF 60
MFQAAGAAQATPSHDAKGGGSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIF
Sbjct: 1 MFQAAGAAQATPSHDAKGGGSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIF 60
Query: 61 HNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEV 120
HNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEV
Sbjct: 61 HNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEV 120
Query: 121 DPGTKTA 127
DPGTKTA
Sbjct: 121 DPGTKTA 127
>gi|165905591 LIM domain and actin binding 1 isoform c [Homo
sapiens]
Length = 600
Score = 141 bits (355), Expect = 2e-34
Identities = 63/98 (64%), Positives = 76/98 (77%), Gaps = 2/98 (2%)
Query: 21 SSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA 80
SS + K F +A +ETC CQKTVYPMERL+A++ +FH SCF C +C+ KLSLG+YA
Sbjct: 214 SSPPKAMKKF--QAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYA 271
Query: 81 ALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHK 118
+LHG YCKPHF QLFKSKGNYDEGFG + HK+LWA K
Sbjct: 272 SLHGRIYCKPHFNQLFKSKGNYDEGFGHRPHKDLWASK 309
>gi|165905589 LIM domain and actin binding 1 isoform a [Homo
sapiens]
Length = 760
Score = 141 bits (355), Expect = 2e-34
Identities = 63/98 (64%), Positives = 76/98 (77%), Gaps = 2/98 (2%)
Query: 21 SSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA 80
SS + K F +A +ETC CQKTVYPMERL+A++ +FH SCF C +C+ KLSLG+YA
Sbjct: 374 SSPPKAMKKF--QAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYA 431
Query: 81 ALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHK 118
+LHG YCKPHF QLFKSKGNYDEGFG + HK+LWA K
Sbjct: 432 SLHGRIYCKPHFNQLFKSKGNYDEGFGHRPHKDLWASK 469
>gi|7705373 LIM domain and actin binding 1 isoform b [Homo sapiens]
Length = 759
Score = 141 bits (355), Expect = 2e-34
Identities = 63/98 (64%), Positives = 76/98 (77%), Gaps = 2/98 (2%)
Query: 21 SSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA 80
SS + K F +A +ETC CQKTVYPMERL+A++ +FH SCF C +C+ KLSLG+YA
Sbjct: 373 SSPPKAMKKF--QAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYA 430
Query: 81 ALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHK 118
+LHG YCKPHF QLFKSKGNYDEGFG + HK+LWA K
Sbjct: 431 SLHGRIYCKPHFNQLFKSKGNYDEGFGHRPHKDLWASK 468
>gi|119372315 xin actin-binding repeat containing 2 isoform 2 [Homo
sapiens]
Length = 938
Score = 140 bits (353), Expect = 3e-34
Identities = 62/84 (73%), Positives = 69/84 (82%)
Query: 32 LRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPH 91
L Q KE C CQKTVYPME LVADK FH SCF C HC++KLSLG+YA+LHG+ YCKPH
Sbjct: 394 LLLQDKEICILCQKTVYPMECLVADKQNFHKSCFRCHHCNSKLSLGNYASLHGQIYCKPH 453
Query: 92 FQQLFKSKGNYDEGFGRKQHKELW 115
F+QLFKSKGNYDEGFG KQHK+ W
Sbjct: 454 FKQLFKSKGNYDEGFGHKQHKDRW 477
>gi|170172518 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 3 [Homo sapiens]
Length = 966
Score = 68.6 bits (166), Expect = 1e-12
Identities = 33/67 (49%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 28 KSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA--ALHGE 85
K F +TC CQK VY MERL A+ FH SCF C++C T L L +YA G+
Sbjct: 752 KEFPQNLGGSDTCYFCQKRVYVMERLSAEGKFFHRSCFKCEYCATTLRLSAYAYDIEDGK 811
Query: 86 FYCKPHF 92
FYCKPH+
Sbjct: 812 FYCKPHY 818
>gi|209862793 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 2 [Homo sapiens]
Length = 1073
Score = 68.6 bits (166), Expect = 1e-12
Identities = 33/67 (49%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 28 KSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA--ALHGE 85
K F +TC CQK VY MERL A+ FH SCF C++C T L L +YA G+
Sbjct: 876 KEFPQNLGGSDTCYFCQKRVYVMERLSAEGKFFHRSCFKCEYCATTLRLSAYAYDIEDGK 935
Query: 86 FYCKPHF 92
FYCKPH+
Sbjct: 936 FYCKPHY 942
>gi|209862789 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 1 [Homo sapiens]
Length = 2002
Score = 68.6 bits (166), Expect = 1e-12
Identities = 33/67 (49%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 28 KSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA--ALHGE 85
K F +TC CQK VY MERL A+ FH SCF C++C T L L +YA G+
Sbjct: 752 KEFPQNLGGSDTCYFCQKRVYVMERLSAEGKFFHRSCFKCEYCATTLRLSAYAYDIEDGK 811
Query: 86 FYCKPHF 92
FYCKPH+
Sbjct: 812 FYCKPHY 818
>gi|7662284 microtubule associated monoxygenase, calponin and LIM
domain containing 2 [Homo sapiens]
Length = 1124
Score = 66.6 bits (161), Expect = 5e-12
Identities = 33/67 (49%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 28 KSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYA--ALHGE 85
KSF L +TC C+K VY MERL A+ FH CF C C T L L +Y G+
Sbjct: 990 KSFPLNLGGSDTCYFCKKRVYVMERLSAEGHFFHRECFRCSICATTLRLAAYTFDCDEGK 1049
Query: 86 FYCKPHF 92
FYCKPHF
Sbjct: 1050 FYCKPHF 1056
>gi|4758086 cysteine and glycine-rich protein 1 isoform 1 [Homo
sapiens]
Length = 193
Score = 53.5 bits (127), Expect = 4e-08
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 6 GAAQATPSHDAKGGGSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCF 65
G + +A G +T + F+ + E C C + VY E+++ +H +CF
Sbjct: 85 GESLGIKHEEAPGHRPTTNPNASKFAQKIGGSERCPRCSQAVYAAEKVIGAGKSWHKACF 144
Query: 66 CCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKG-NYDEGFGRKQHKE 113
C C L + A GE YCK + + F KG + +G G H E
Sbjct: 145 RCAKCGKGLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQGAGALVHSE 193
Score = 50.4 bits (119), Expect = 4e-07
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 40 CAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHG-EFYCKPHFQQLFKS 98
C CQKTVY E + + FH SCF C C L + A+HG E YCK + + +
Sbjct: 10 CGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLD-STTVAVHGEEIYCKSCYGKKYGP 68
Query: 99 KG-NYDEGFG 107
KG Y +G G
Sbjct: 69 KGYGYGQGAG 78
>gi|189083753 cysteine and glycine-rich protein 3 [Homo sapiens]
Length = 194
Score = 52.8 bits (125), Expect = 7e-08
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 40 CAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSK 99
C AC+KTVY E + + FH +CF C C L + AA E YCK + + + K
Sbjct: 10 CGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPK 69
Query: 100 G-NYDEGFG 107
G Y +G G
Sbjct: 70 GIGYGQGAG 78
Score = 45.8 bits (107), Expect = 9e-06
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 17 KGGGSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSL 76
K S T F+ + E C C K+VY E+++ +H +CF C C L
Sbjct: 97 KPARSVTTSNPSKFTAKFGESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLES 156
Query: 77 GSYAALHGEFYCKPHFQQLFKSKGNYDEGFG 107
+ GE YCK + + F G GFG
Sbjct: 157 TNVTDKDGELYCKVCYAKNFGPTG---IGFG 184
>gi|4502893 cysteine and glycine-rich protein 3 [Homo sapiens]
Length = 194
Score = 52.8 bits (125), Expect = 7e-08
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 40 CAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSK 99
C AC+KTVY E + + FH +CF C C L + AA E YCK + + + K
Sbjct: 10 CGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPK 69
Query: 100 G-NYDEGFG 107
G Y +G G
Sbjct: 70 GIGYGQGAG 78
Score = 45.8 bits (107), Expect = 9e-06
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 17 KGGGSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSL 76
K S T F+ + E C C K+VY E+++ +H +CF C C L
Sbjct: 97 KPARSVTTSNPSKFTAKFGESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLES 156
Query: 77 GSYAALHGEFYCKPHFQQLFKSKGNYDEGFG 107
+ GE YCK + + F G GFG
Sbjct: 157 TNVTDKDGELYCKVCYAKNFGPTG---IGFG 184
>gi|47087157 nebulette non-muscle isoform [Homo sapiens]
Length = 270
Score = 50.8 bits (120), Expect = 3e-07
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 40 CAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHF-QQLFKS 98
CA C K VYP E++ +H CF C+ C L++ +Y + YC H+ +Q F +
Sbjct: 5 CARCGKVVYPTEKVNCLDKYWHKGCFHCEVCKMALNMNNYKGYEKKPYCNAHYPKQSFTT 64
Query: 99 KGNYDEGFGRKQHKEL 114
+ E KQ EL
Sbjct: 65 VADTPENLRLKQQSEL 80
>gi|33667117 MICAL-like 2 isoform 1 [Homo sapiens]
Length = 904
Score = 50.8 bits (120), Expect = 3e-07
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 14 HDAKGGGSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTK 73
++ GG ++ + SL V TC C K V+ ++R +AD ++H SCF CK C
Sbjct: 165 NEGAGGPPPKTDQALAGSL---VSSTCGVCGKHVHLVQRHLADGRLYHRSCFRCKQCSCT 221
Query: 74 LSLGSYAAL--HGEFYCKPH 91
L G+Y A G F C H
Sbjct: 222 LHSGAYKATGEPGTFVCTSH 241
>gi|221316627 cysteine and glycine-rich protein 1 isoform 2 [Homo
sapiens]
Length = 140
Score = 50.4 bits (119), Expect = 4e-07
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 40 CAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHG-EFYCKPHFQQLFKS 98
C CQKTVY E + + FH SCF C C L + A+HG E YCK + + +
Sbjct: 10 CGVCQKTVYFAEEVQCEGNSFHKSCFLCMVCKKNLD-STTVAVHGEEIYCKSCYGKKYGP 68
Query: 99 KG-NYDEGFG 107
KG Y +G G
Sbjct: 69 KGYGYGQGAG 78
>gi|5453710 LIM and SH3 protein 1 [Homo sapiens]
Length = 261
Score = 50.1 bits (118), Expect = 5e-07
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 40 CAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHF-QQLFKS 98
CA C K VYP E++ +H +CF C+ C L++ +Y + YC H+ +Q F
Sbjct: 5 CARCGKIVYPTEKVNCLDKFWHKACFHCETCKMTLNMKNYKGYEKKPYCNAHYPKQSFTM 64
Query: 99 KGNYDEGFGRKQHKEL 114
+ E KQ EL
Sbjct: 65 VADTPENLRLKQQSEL 80
>gi|31324577 molecule interacting with Rab13 [Homo sapiens]
Length = 863
Score = 50.1 bits (118), Expect = 5e-07
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 39 TCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSY--AALHGEFYCKPHFQQL 95
TCAACQ+ V+ ++R +AD ++H CF C+ C + L G+Y G F C H +L
Sbjct: 163 TCAACQQHVHLVQRYLADGRLYHRHCFRCRRCSSTLLPGAYENGPEEGTFVCAEHCARL 221
>gi|4503101 cysteine and glycine-rich protein 2 [Homo sapiens]
Length = 193
Score = 49.7 bits (117), Expect = 6e-07
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 22 STVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAA 81
+T + F+ + E C+ C +VY E+++ +H +CF C C L +
Sbjct: 101 TTNPNTSKFAQKYGGAEKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTE 160
Query: 82 LHGEFYCKPHFQQLFKSKG-NYDEGFGRKQHKE 113
GE YCK + + F KG Y +G G H +
Sbjct: 161 KEGEIYCKGCYAKNFGPKGFGYGQGAGALVHAQ 193
Score = 48.9 bits (115), Expect = 1e-06
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 40 CAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSK 99
C AC +TVY E + D FH CF C C L + A E YCK + + + K
Sbjct: 10 CGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPK 69
Query: 100 G-NYDEGFG 107
G Y +G G
Sbjct: 70 GYGYGQGAG 78
>gi|205360947 microtubule associated monoxygenase, calponin and LIM
domain containing 1 isoform 1 [Homo sapiens]
Length = 1067
Score = 47.8 bits (112), Expect = 2e-06
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 38 ETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGE--FYCKPHFQQL 95
+ CA C + +Y +ERL + FH SCF C C L G Y G+ FYC H Q
Sbjct: 695 DLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQT 754
Query: 96 FKSKGNYDEG 105
D G
Sbjct: 755 DHKAEGSDRG 764
>gi|226530313 microtubule associated monoxygenase, calponin and LIM
domain containing 1 isoform 2 [Homo sapiens]
Length = 981
Score = 47.8 bits (112), Expect = 2e-06
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 38 ETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGE--FYCKPHFQQL 95
+ CA C + +Y +ERL + FH SCF C C L G Y G+ FYC H Q
Sbjct: 609 DLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQT 668
Query: 96 FKSKGNYDEG 105
D G
Sbjct: 669 DHKAEGSDRG 678
>gi|116517305 cysteine-rich protein 3 [Homo sapiens]
Length = 204
Score = 45.8 bits (107), Expect = 9e-06
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 39 TCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYC-KPHFQQLFK 97
TC CQ+ V+ E++ + +H C C+ CH+ LS G +A +G YC KP + LF
Sbjct: 4 TCPRCQQPVFFAEKVSSLGKNWHRFCLKCERCHSILSPGGHAEHNGRPYCHKPCYGALFG 63
Query: 98 SKGNYDEGFG 107
+G G G
Sbjct: 64 PRGVNIGGVG 73
Score = 42.7 bits (99), Expect = 7e-05
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 40 CAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCK-PHFQQLFKS 98
C C + VY E++++ +H C C+ CH L+ GS+A G YC P + LF
Sbjct: 124 CPGCGEPVYFAEKVMSLGRNWHRPCLRCQRCHKTLTAGSHAEHDGVPYCHVPCYGYLFGP 183
Query: 99 KG 100
KG
Sbjct: 184 KG 185
>gi|238859658 LIM and senescent cell antigen-like domains 2
isoform 1 [Homo sapiens]
Length = 363
Score = 43.9 bits (102), Expect = 3e-05
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 34 AQVKETCAACQKTVYPMERLV-ADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHF 92
A C CQ P ER+V ++ ++H CF C C G + G YC+ F
Sbjct: 31 ALANAVCQRCQARFSPAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDF 90
Query: 93 QQLF 96
Q LF
Sbjct: 91 QMLF 94
Score = 29.3 bits (64), Expect = 0.85
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 40 CAACQKTVYPMERLVADKL--IFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLF 96
C AC++ P+E V + L +H F C C + G YC+ H+ QLF
Sbjct: 220 CGACRR---PIEGRVVNALGKQWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLF 275
Score = 27.3 bits (59), Expect = 3.2
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 60 FHNSCFCCKHCHTKLSLGSYAALHGEFYCKP-HFQQLFKSKGNY 102
+H CF C+ C +L+ + G C+P H ++ K G Y
Sbjct: 117 WHPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKY 160
>gi|238776788 LIM and senescent cell antigen-like domains 2
isoform 5 [Homo sapiens]
Length = 336
Score = 43.9 bits (102), Expect = 3e-05
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 34 AQVKETCAACQKTVYPMERLV-ADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHF 92
A C CQ P ER+V ++ ++H CF C C G + G YC+ F
Sbjct: 4 ALANAVCQRCQARFSPAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDF 63
Query: 93 QQLF 96
Q LF
Sbjct: 64 QMLF 67
Score = 29.3 bits (64), Expect = 0.85
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 40 CAACQKTVYPMERLVADKL--IFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLF 96
C AC++ P+E V + L +H F C C + G YC+ H+ QLF
Sbjct: 193 CGACRR---PIEGRVVNALGKQWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLF 248
Score = 27.3 bits (59), Expect = 3.2
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 60 FHNSCFCCKHCHTKLSLGSYAALHGEFYCKP-HFQQLFKSKGNY 102
+H CF C+ C +L+ + G C+P H ++ K G Y
Sbjct: 90 WHPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKY 133
>gi|238776786 LIM and senescent cell antigen-like domains 2
isoform 3 [Homo sapiens]
Length = 341
Score = 43.9 bits (102), Expect = 3e-05
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 34 AQVKETCAACQKTVYPMERLV-ADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHF 92
A C CQ P ER+V ++ ++H CF C C G + G YC+ F
Sbjct: 9 ALANAVCQRCQARFSPAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDF 68
Query: 93 QQLF 96
Q LF
Sbjct: 69 QMLF 72
Score = 29.3 bits (64), Expect = 0.85
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 40 CAACQKTVYPMERLVADKL--IFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLF 96
C AC++ P+E V + L +H F C C + G YC+ H+ QLF
Sbjct: 198 CGACRR---PIEGRVVNALGKQWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLF 253
Score = 27.3 bits (59), Expect = 3.2
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 60 FHNSCFCCKHCHTKLSLGSYAALHGEFYCKP-HFQQLFKSKGNY 102
+H CF C+ C +L+ + G C+P H ++ K G Y
Sbjct: 95 WHPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKY 138
>gi|40804748 LIM and senescent cell antigen-like domains 2 isoform
2 [Homo sapiens]
Length = 365
Score = 43.9 bits (102), Expect = 3e-05
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 34 AQVKETCAACQKTVYPMERLV-ADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHF 92
A C CQ P ER+V ++ ++H CF C C G + G YC+ F
Sbjct: 33 ALANAVCQRCQARFSPAERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDF 92
Query: 93 QQLF 96
Q LF
Sbjct: 93 QMLF 96
Score = 29.3 bits (64), Expect = 0.85
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 40 CAACQKTVYPMERLVADKL--IFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLF 96
C AC++ P+E V + L +H F C C + G YC+ H+ QLF
Sbjct: 222 CGACRR---PIEGRVVNALGKQWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLF 277
Score = 27.3 bits (59), Expect = 3.2
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 60 FHNSCFCCKHCHTKLSLGSYAALHGEFYCKP-HFQQLFKSKGNY 102
+H CF C+ C +L+ + G C+P H ++ K G Y
Sbjct: 119 WHPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKY 162
>gi|66932988 filamin-binding LIM protein-1 isoform c [Homo sapiens]
Length = 276
Score = 43.9 bits (102), Expect = 3e-05
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 38 ETCAACQKTVYPMERLV-ADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLF 96
+ CA C KTV P E V A K +H CF C+ C +L+ S+ G C+P +Q
Sbjct: 84 DICAFCHKTVSPRELAVEAMKRQYHAQCFTCRTCRRQLAGQSFYQKDGRPLCEPCYQDTL 143
Query: 97 KSKGNYDE 104
+ G E
Sbjct: 144 ERCGKCGE 151
Score = 32.0 bits (71), Expect = 0.13
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 40 CAACQKTVYPMERLVADKLI-----FHNSCFCCKHCHTKLSL-----GSYAALHGEFYCK 89
C+ C+ + P + A K+ FH +C+ C+ C LS+ G Y L+ +CK
Sbjct: 206 CSICENPIIPRDGKDAFKIECMGRNFHENCYRCEDCRILLSVEPTDQGCY-PLNNHLFCK 264
Query: 90 P 90
P
Sbjct: 265 P 265
Score = 26.6 bits (57), Expect = 5.5
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 60 FHNSCFCCKHCHTKLSLGSYA-ALHGEFYCKPHFQQLF 96
FH SCF C C + S+A E YC F + F
Sbjct: 165 FHPSCFTCVTCARCIGDESFALGSQNEVYCLDDFYRKF 202
>gi|66932986 filamin-binding LIM protein-1 isoform b [Homo sapiens]
Length = 374
Score = 43.9 bits (102), Expect = 3e-05
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 38 ETCAACQKTVYPMERLV-ADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLF 96
+ CA C KTV P E V A K +H CF C+ C +L+ S+ G C+P +Q
Sbjct: 181 DICAFCHKTVSPRELAVEAMKRQYHAQCFTCRTCRRQLAGQSFYQKDGRPLCEPCYQDTL 240
Query: 97 KSKGNYDE 104
+ G E
Sbjct: 241 ERCGKCGE 248
>gi|66932982 filamin-binding LIM protein-1 isoform a [Homo sapiens]
Length = 373
Score = 43.9 bits (102), Expect = 3e-05
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 38 ETCAACQKTVYPMERLV-ADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLF 96
+ CA C KTV P E V A K +H CF C+ C +L+ S+ G C+P +Q
Sbjct: 181 DICAFCHKTVSPRELAVEAMKRQYHAQCFTCRTCRRQLAGQSFYQKDGRPLCEPCYQDTL 240
Query: 97 KSKGNYDE 104
+ G E
Sbjct: 241 ERCGKCGE 248
Score = 32.0 bits (71), Expect = 0.13
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 40 CAACQKTVYPMERLVADKLI-----FHNSCFCCKHCHTKLSL-----GSYAALHGEFYCK 89
C+ C+ + P + A K+ FH +C+ C+ C LS+ G Y L+ +CK
Sbjct: 303 CSICENPIIPRDGKDAFKIECMGRNFHENCYRCEDCRILLSVEPTDQGCY-PLNNHLFCK 361
Query: 90 P 90
P
Sbjct: 362 P 362
Score = 26.6 bits (57), Expect = 5.5
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 60 FHNSCFCCKHCHTKLSLGSYA-ALHGEFYCKPHFQQLF 96
FH SCF C C + S+A E YC F + F
Sbjct: 262 FHPSCFTCVTCARCIGDESFALGSQNEVYCLDDFYRKF 299
>gi|4503049 cysteine-rich protein 2 [Homo sapiens]
Length = 208
Score = 43.9 bits (102), Expect = 3e-05
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 4 AAGAAQATPSHDAKGGGSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNS 63
AA A + S KG R+ S + TC C K VY E++ + +H
Sbjct: 95 AARAEERKASGPPKGPS-----RASSVTTFTGEPNTCPRCSKKVYFAEKVTSLGKDWHRP 149
Query: 64 CFCCKHCHTKLSLGSYAALHGEFYC-KPHFQQLFKSKG 100
C C+ C L+ G +A G+ YC KP + LF KG
Sbjct: 150 CLRCERCGKTLTPGGHAEHDGQPYCHKPCYGILFGPKG 187
Score = 42.0 bits (97), Expect = 1e-04
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 40 CAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYC-KPHFQQLFKS 98
C C KTVY E++ + +H C C+ C L+ G +A G+ +C KP + LF
Sbjct: 5 CPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYATLFGP 64
Query: 99 KG 100
KG
Sbjct: 65 KG 66
>gi|13518026 LIM and senescent cell antigen-like domains 1 [Homo
sapiens]
Length = 325
Score = 43.5 bits (101), Expect = 4e-05
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 34 AQVKETCAACQKTVYPMERLV-ADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHF 92
A TC C+ P E++V ++ ++H CF C C + G + G YC+ F
Sbjct: 4 ALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDF 63
Query: 93 QQLF 96
Q LF
Sbjct: 64 QMLF 67
Score = 28.5 bits (62), Expect = 1.5
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 40 CAACQKTVYPMERLVADKL--IFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLF 96
C AC++ P+E V + + +H F C C + G YC+ H+ QLF
Sbjct: 193 CGACRR---PIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLF 248
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.131 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,052,118
Number of Sequences: 37866
Number of extensions: 195293
Number of successful extensions: 775
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 277
length of query: 127
length of database: 18,247,518
effective HSP length: 90
effective length of query: 37
effective length of database: 14,839,578
effective search space: 549064386
effective search space used: 549064386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.